F181036

General Info

Members Datasets Scaffolds Average Seq Length
140 127 114 413

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221681|2644456228
Length 439
Sequence AVRHCDPGADGAGLAWVHVSPTPFPSPVTAATIDEAAVRVAEVVSRTPLELSARLSEATGAQVWLKREDLQPVRSYKIRGAYNLIVQLDHESRAKGVVCASAGNHAQGVALACRRLGVQGRIVVPGTTPRQKRERIVTLGGSNVEVVVVGDSYEDAFRAAQAHSAETGAVLVPAFDDPRTISGQGTVASEVVDQLGSAPDLLVLPVGGGGLVAGISTWMHERHPSTRIVGVEPAGAASMTAALAAGQPVAVDAVDPFVDGAAVGTVGAHTFPLVRDAGVEMRTVDEGHICTEMLRLYQSDGIIAEPAGALATAVLDDGLRIEPGSTVVCVVSGGNNDVSRYGEILERSLIHRGLKHYFLVSFPQEPGALRRFLDEILGPDDDITLFDYVKRNNRENGPALIGIELADRDDLPGLLGRLDDSPLGVEQIPPGSPLFHYLL

Samples

Sample ID Description Type Environment
1 2643221561 Nocardioides sp. Root151 Isolate Unclassified
2 2643221615 Nocardioides sp. Root224 Isolate Unclassified
3 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
4 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
5 2643221696 Nocardioides sp. Root140 Isolate Unclassified
6 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
7 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
8 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
9 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
10 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
11 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
12 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
13 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
14 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
15 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
16 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
17 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
18 2867475112 Streptomyces sp. TM32 Isolate Unclassified
19 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
20 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
21 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
22 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
23 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
24 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
25 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
26 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
28 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
29 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
30 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
31 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
32 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
33 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
36 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
40 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
41 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
42 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
70 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
71 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
74 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
75 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
78 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
79 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
80 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
81 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
82 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
83 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
84 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
85 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
86 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
87 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
88 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
89 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
90 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
91 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
92 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
95 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
96 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
97 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
98 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
109 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
110 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
111 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
116 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
117 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
118 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
119 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
120 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
121 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
122 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
123 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
124 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
125 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
126 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
127 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.71
Metatranscriptomes 0.71
Isolates 18.57

Biome Distribution

Category Percentage (%)
Aerial Root 0.71
Bulb 0
Endosphere 7.14
Nodule 0
Rhizoplane 5
Rhizosphere 59.29
Stem 0
Stem Tuber 0
Unclassified 27.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10007305 3300001989 Bacteria 4148
2 JGI24737J22298_10008002 3300001990 Bacteria 3552
3 JGI25406J46586_10022415 3300003203 Bacteria 2517
4 Ga0070658_10025714 3300005327 Bacteria 4718
5 Ga0070683_100010878 3300005329 Bacteria 7834
6 Ga0070680_100003813 3300005336 Bacteria 11276
7 Ga0070668_100046189 3300005347 Bacteria 3343
8 Ga0070671_100009688 3300005355 Bacteria 7739
9 Ga0070713_100034407 3300005436 Bacteria 4070
10 Ga0070681_10028143 3300005458 Bacteria 5651
11 Ga0070679_100068167 3300005530 Bacteria 3549
12 Ga0070684_100054103 3300005535 Bacteria 3496
13 Ga0070664_100059837 3300005564 Bacteria 3242
14 Ga0068863_100171547 3300005841 Bacteria 2081
15 Ga0068860_100016781 3300005843 Bacteria 7138
16 Ga0081455_10000258 3300005937 Bacteria 69890
17 Ga0081539_10000458 3300005985 Bacteria 86555
18 Ga0070717_10003274 3300006028 Bacteria 11582
19 Ga0075365_10018394 3300006038 Bacteria 4295
20 Ga0075364_10011498 3300006051 Bacteria 5378
21 Ga0075367_10009926 3300006178 Bacteria 4988
22 Ga0105237_10195854 3300009545 Bacteria 2021
23 Ga0157369_10229794 3300013105 Bacteria 1940
24 Ga0157375_10111300 3300013308 Bacteria 2837
25 Ga0182008_10037846 3300014497 Bacteria 2413
26 Ga0157377_10117989 3300014745 Bacteria 1604
27 Ga0163161_10173744 3300017792 Bacteria 1648
28 Ga0206353_10378610 3300020082 Bacteria 14406
29 Ga0207647_10071682 3300025904 Bacteria 2090
30 Ga0207705_10027437 3300025909 Bacteria 4060
31 Ga0207707_10000831 3300025912 Bacteria 30306
32 Ga0207660_10010403 3300025917 Bacteria 6036
33 Ga0207652_10029529 3300025921 Bacteria 4586
34 Ga0207700_10262096 3300025928 Bacteria 1480
35 Ga0207644_10060603 3300025931 Bacteria 2738
36 Ga0207661_10003437 3300025944 Bacteria 10990
37 Ga0207679_10183925 3300025945 Bacteria 1731
38 Ga0207658_10066542 3300025986 Bacteria 2711
39 Ga0207641_10006039 3300026088 Bacteria 10262
40 Ga0207641_10126313 3300026088 Bacteria 2290
41 Ga0207674_10323263 3300026116 Bacteria 1492
42 Ga0268266_10018713 3300028379 Bacteria 5901
43 Ga0268264_10008784 3300028381 Bacteria 8384
44 Ga0307515_10205376 3300028794 Bacteria 1832
45 Ga0307512_10003601 3300030522 Bacteria 17734
46 Ga0265327_10000134 3300031251 Bacteria 163243
47 Ga0307513_10000085 3300031456 Bacteria 131110
48 Ga0307513_10001838 3300031456 Bacteria 30130
49 Ga0307507_10010917 3300033179 Bacteria 11583
50 Ga0316574_0033022 3300035398 Bacteria 3149
51 Ga0316584_0048130 3300036712 Bacteria 3186
52 Ga0451841_0641397 3300041498 Bacteria 2077
53 Ga0466972_0006990 3300044658 Bacteria 5660
54 Ga0466972_0009994 3300044658 Bacteria 4765
55 Ga0466965_0002082 3300044683 Bacteria 8384
56 Ga0466961_0074098 3300044693 Bacteria 2159
57 Ga0466963_0025374 3300044694 Bacteria 3780
58 Ga0466970_0009534 3300044765 Bacteria 4910
59 Ga0466970_0020581 3300044765 Bacteria 3430
60 Ga0466960_0007346 3300044901 Bacteria 4472
61 Ga0466967_0317663 3300045976 Bacteria 1501
62 Ga0495672_0067281 3300047320 Bacteria 2041
63 Ga0496100_0000585 3300048903 Bacteria 17202
64 Ga0496101_0077733 3300048904 Bacteria 2446
65 Ga0496102_0000127 3300048905 Bacteria 104838
66 Ga0496102_0004687 3300048905 Bacteria 11566
67 Ga0496103_0000134 3300048906 Bacteria 77847
68 Ga0496104_0002487 3300048907 Bacteria 15864
69 Ga0496105_0031935 3300048908 Bacteria 4318
70 Ga0496116_0000228 3300048919 Bacteria 104766
71 Ga0496117_0000204 3300048920 Bacteria 116843
72 Ga0496118_0000202 3300048921 Bacteria 104816
73 Ga0496119_0000700 3300048922 Bacteria 44933
74 Ga0496120_0006080 3300048923 Bacteria 9374
75 Ga0496121_0002993 3300048924 Bacteria 24539
76 Ga0496121_0016157 3300048924 Bacteria 7730
77 Ga0496123_0013885 3300048926 Bacteria 6715
78 Ga0496124_0005696 3300048927 Bacteria 13879
79 Ga0496124_0189258 3300048927 Bacteria 1577
80 Ga0496125_0029839 3300048928 Bacteria 4891
81 Ga0496126_0000003 3300048929 Bacteria 961576
82 Ga0496126_0000036 3300048929 Bacteria 354901
83 Ga0496126_0000490 3300048929 Bacteria 77991
84 Ga0501033_0012121 3300049570 Bacteria 6581
85 Ga0501036_0012959 3300049572 Bacteria 6921
86 Ga0501037_0022494 3300049573 Bacteria 4664
87 Ga0501037_0142033 3300049573 Bacteria 1718
88 Ga0501038_0074488 3300049574 Bacteria 2872
89 Ga0501039_0007826 3300049575 Bacteria 8148
90 Ga0501040_0005460 3300049576 Bacteria 8224
91 Ga0501042_0005114 3300049578 Bacteria 8417
92 Ga0501046_0012365 3300049580 Bacteria 7271
93 Ga0501047_0023643 3300049581 Bacteria 5900
94 Ga0501048_0029393 3300049582 Bacteria 3986
95 Ga0501069_0007167 3300049585 Bacteria 5844
96 Ga0501071_0103705 3300049587 Bacteria 2098
97 Ga0501072_0071747 3300049588 Bacteria 2736
98 Ga0501076_0001438 3300049592 Bacteria 15993
99 Ga0501080_0045048 3300049742 Bacteria 4106
100 Ga0501080_0071671 3300049742 Bacteria 3223
101 Ga0501080_0141160 3300049742 Bacteria 2227
102 Ga0501081_0148499 3300049743 Bacteria 1683
103 Ga0501083_0037287 3300049744 Bacteria 3312
104 Ga0501045_0177780 3300049824 Bacteria 1585
105 nmdc:mga00v17_1984_c1 3300050491 Bacteria 10562
106 Ga0500644_0023500 3300053088 Bacteria 1873
107 Ga0500556_0000599 3300053104 Bacteria 23426
108 Ga0500568_0000023 3300053139 Bacteria 176763
109 Ga0500573_0010349 3300053140 Bacteria 5205
110 Ga0500616_0000160 3300053153 Bacteria 111647
111 Ga0500616_0000579 3300053153 Bacteria 44555
112 Ga0501084_0076128 3300054114 Bacteria 2812
113 Ga0501082_0015758 3300060353 Bacteria 6502
114 Ga0530510_0003028 3300061734 Bacteria 11538

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006028 Ga0070717_10003274 Ga0070717_1000327412 390
2 3300025928 Ga0207700_10262096 Ga0207700_102620961 390
3 3300047320 Ga0495672_0067281 Ga0495672_0067281_236_1450 390
4 3300005355 Ga0070671_100009688 Ga0070671_1000096888 393
5 3300005841 Ga0068863_100171547 Ga0068863_1001715472 393
6 3300005843 Ga0068860_100016781 Ga0068860_1000167815 393
7 3300025931 Ga0207644_10060603 Ga0207644_100606032 393
8 3300026088 Ga0207641_10126313 Ga0207641_101263131 393
9 3300028381 Ga0268264_10008784 Ga0268264_100087843 393
10 3300048927 Ga0496124_0189258 Ga0496124_0189258_180_1451 395
11 3300005327 Ga0070658_10025714 Ga0070658_100257143 396
12 3300005336 Ga0070680_100003813 Ga0070680_1000038139 396
13 3300005458 Ga0070681_10028143 Ga0070681_100281434 396
14 3300031251 Ga0265327_10000134 Ga0265327_1000013492 396
15 3300014497 Ga0182008_10037846 Ga0182008_100378463 397
16 3300044658 Ga0466972_0009994 Ga0466972_0009994_3336_4595 397
17 3300044683 Ga0466965_0002082 Ga0466965_0002082_5488_6747 397
18 3300044765 Ga0466970_0009534 Ga0466970_0009534_1553_2812 397
19 3300044901 Ga0466960_0007346 Ga0466960_0007346_3087_4346 397
20 3300026088 Ga0207641_10006039 Ga0207641_100060397 399
21 3300028379 Ga0268266_10018713 Ga0268266_100187135 399
22 3300048903 Ga0496100_0000585 Ga0496100_0000585_6193_7452 399
23 3300048904 Ga0496101_0077733 Ga0496101_0077733_1021_2280 399
24 3300048905 Ga0496102_0000127 Ga0496102_0000127_80609_81868 399
25 3300048906 Ga0496103_0000134 Ga0496103_0000134_21933_23192 399
26 3300048907 Ga0496104_0002487 Ga0496104_0002487_8915_10174 399
27 3300048908 Ga0496105_0031935 Ga0496105_0031935_316_1575 399
28 3300048919 Ga0496116_0000228 Ga0496116_0000228_22901_24160 399
29 3300048920 Ga0496117_0000204 Ga0496117_0000204_22969_24228 399
30 3300048921 Ga0496118_0000202 Ga0496118_0000202_80605_81864 399
31 3300048922 Ga0496119_0000700 Ga0496119_0000700_1384_2643 399
32 3300048923 Ga0496120_0006080 Ga0496120_0006080_5803_7062 399
33 3300048924 Ga0496121_0016157 Ga0496121_0016157_668_1927 399
34 3300048927 Ga0496124_0005696 Ga0496124_0005696_6521_7780 399
35 3300048928 Ga0496125_0029839 Ga0496125_0029839_1622_2881 399
36 3300048929 Ga0496126_0000490 Ga0496126_0000490_22088_23347 399
37 3300049581 Ga0501047_0023643 Ga0501047_0023643_2530_3783 402
38 3300005329 Ga0070683_100010878 Ga0070683_1000108783 405
39 3300005535 Ga0070684_100054103 Ga0070684_1000541031 405
40 3300005564 Ga0070664_100059837 Ga0070664_1000598372 405
41 3300025944 Ga0207661_10003437 Ga0207661_100034378 405
42 3300030522 Ga0307512_10003601 Ga0307512_100036018 405
43 3300049742 Ga0501080_0045048 Ga0501080_0045048_594_1847 406
44 iso_pu_bacteria 2791354901 2791911283 406
45 iso_pu_bacteria 2866612099 2866618371 406
46 3300013308 Ga0157375_10111300 Ga0157375_101113003 407
47 3300014745 Ga0157377_10117989 Ga0157377_101179891 407
48 3300049573 Ga0501037_0022494 Ga0501037_0022494_2498_3736 407
49 3300049742 Ga0501080_0071671 Ga0501080_0071671_1866_3104 407
50 3300025945 Ga0207679_10183925 Ga0207679_101839252 408
51 3300035398 Ga0316574_0033022 Ga0316574_0033022_11_1237 408
52 3300036712 Ga0316584_0048130 Ga0316584_0048130_1058_2284 408
53 3300049585 Ga0501069_0007167 Ga0501069_0007167_1350_2603 408
54 3300044658 Ga0466972_0006990 Ga0466972_0006990_2862_4091 409
55 3300044765 Ga0466970_0020581 Ga0466970_0020581_208_1437 409
56 iso_pu_bacteria 2857481737 2857485365 409
57 iso_pu_bacteria 2866552031 2866554215 411
58 3300005347 Ga0070668_100046189 Ga0070668_1000461891 412
59 3300006038 Ga0075365_10018394 Ga0075365_100183942 412
60 3300044693 Ga0466961_0074098 Ga0466961_0074098_557_1810 412
61 3300053088 Ga0500644_0023500 Ga0500644_0023500_554_1792 412
62 3300053104 Ga0500556_0000599 Ga0500556_0000599_5179_6420 412
63 iso_pu_bacteria 2863067949 2863075381 412
64 iso_pu_bacteria 2867475112 2867479416 412
65 iso_pu_bacteria 8056207758 8056214673 412
66 3300003203 JGI25406J46586_10022415 JGI25406J46586_100224152 413
67 3300005985 Ga0081539_10000458 Ga0081539_100004584 413
68 iso_pu_bacteria 2643221615 2644091064 413
69 iso_pu_bacteria 2643221657 2644320867 413
70 3300053139 Ga0500568_0000023 Ga0500568_0000023_131578_132822 414
71 iso_pu_bacteria 2773857762 2774392915 414
72 iso_pu_bacteria 2808606439 2809196739 414
73 iso_pu_bacteria 2811994878 2812351132 414
74 iso_pu_bacteria 2891968417 2891971250 414
75 iso_pu_bacteria 2917736166 2917743480 414
76 3300053140 Ga0500573_0010349 Ga0500573_0010349_3177_4424 415
77 iso_pu_bacteria 2887443736 2887447231 415
78 iso_pu_bacteria 2915358134 2915359024 415
79 iso_pu_bacteria 8054472261 8054475143 415
80 3300006178 Ga0075367_10009926 Ga0075367_100099264 416
81 3300044694 Ga0466963_0025374 Ga0466963_0025374_144_1394 416
82 3300045976 Ga0466967_0317663 Ga0466967_0317663_104_1354 416
83 3300048929 Ga0496126_0000036 Ga0496126_0000036_106728_107978 416
84 iso_pu_bacteria 2848551377 2848551753 416
85 3300017792 Ga0163161_10173744 Ga0163161_101737441 417
86 3300031456 Ga0307513_10000085 Ga0307513_1000008550 417
87 3300031456 Ga0307513_10001838 Ga0307513_1000183821 417
88 3300041498 Ga0451841_0641397 Ga0451841_0641397_175_1428 417
89 3300053153 Ga0500616_0000160 Ga0500616_0000160_81762_83015 417
90 3300053153 Ga0500616_0000579 Ga0500616_0000579_24855_26117 417
91 3300005436 Ga0070713_100034407 Ga0070713_1000344073 418
92 3300033179 Ga0307507_10010917 Ga0307507_1001091711 418
93 3300048929 Ga0496126_0000003 Ga0496126_0000003_202665_203921 418
94 3300005530 Ga0070679_100068167 Ga0070679_1000681672 419
95 3300005937 Ga0081455_10000258 Ga0081455_1000025847 419
96 3300020082 Ga0206353_10378610 Ga0206353_103786104 419
97 3300025909 Ga0207705_10027437 Ga0207705_100274372 419
98 3300025912 Ga0207707_10000831 Ga0207707_1000083124 419
99 3300025917 Ga0207660_10010403 Ga0207660_100104036 419
100 3300025921 Ga0207652_10029529 Ga0207652_100295294 419
101 iso_pu_bacteria 2816332119 2816422532 419
102 iso_pu_bacteria 2842888712 2842891224 419
103 iso_pu_bacteria 2857710386 2857710902 419
104 3300048926 Ga0496123_0013885 Ga0496123_0013885_3438_4700 420
105 iso_pu_bacteria 2643221561 2643824797 420
106 iso_pu_bacteria 2643221696 2644536048 420
107 3300009545 Ga0105237_10195854 Ga0105237_101958541 421
108 iso_pu_bacteria 2984592036 2984593738 421
109 3300028794 Ga0307515_10205376 Ga0307515_102053761 422
110 iso_pu_bacteria 8056060235 8056065850 422
111 3300006051 Ga0075364_10011498 Ga0075364_100114983 423
112 3300025904 Ga0207647_10071682 Ga0207647_100716822 423
113 3300050491 nmdc:mga00v17_1984_c1 nmdc:mga00v17_1984_c1_8388_9659 423
114 3300048905 Ga0496102_0004687 Ga0496102_0004687_11_1285 424
115 3300048924 Ga0496121_0002993 Ga0496121_0002993_8161_9435 424
116 3300001989 JGI24739J22299_10007305 JGI24739J22299_100073051 426
117 3300001990 JGI24737J22298_10008002 JGI24737J22298_100080023 426
118 3300013105 Ga0157369_10229794 Ga0157369_102297942 426
119 3300025986 Ga0207658_10066542 Ga0207658_100665421 426
120 3300026116 Ga0207674_10323263 Ga0207674_103232632 426
121 3300049570 Ga0501033_0012121 Ga0501033_0012121_3894_5186 426
122 3300049572 Ga0501036_0012959 Ga0501036_0012959_208_1500 426
123 3300049573 Ga0501037_0142033 Ga0501037_0142033_172_1464 426
124 3300049574 Ga0501038_0074488 Ga0501038_0074488_1436_2728 426
125 3300049575 Ga0501039_0007826 Ga0501039_0007826_1278_2570 426
126 3300049576 Ga0501040_0005460 Ga0501040_0005460_5995_7287 426
127 3300049578 Ga0501042_0005114 Ga0501042_0005114_1626_2918 426
128 3300049580 Ga0501046_0012365 Ga0501046_0012365_5725_7017 426
129 3300049582 Ga0501048_0029393 Ga0501048_0029393_1292_2584 426
130 3300049587 Ga0501071_0103705 Ga0501071_0103705_509_1801 426
131 3300049588 Ga0501072_0071747 Ga0501072_0071747_1397_2689 426
132 3300049592 Ga0501076_0001438 Ga0501076_0001438_2667_3959 426
133 3300049742 Ga0501080_0141160 Ga0501080_0141160_484_1776 426
134 3300049743 Ga0501081_0148499 Ga0501081_0148499_247_1539 426
135 3300049744 Ga0501083_0037287 Ga0501083_0037287_762_2054 426
136 3300049824 Ga0501045_0177780 Ga0501045_0177780_63_1355 426
137 3300054114 Ga0501084_0076128 Ga0501084_0076128_135_1427 426
138 3300060353 Ga0501082_0015758 Ga0501082_0015758_3992_5284 426
139 3300061734 Ga0530510_0003028 Ga0530510_0003028_6586_7878 426
140 iso_pu_bacteria 2643221681 2644456228 426

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

40

333

0.98

PF00585

Thr_dehydrat_C

C-terminal regulatory domain of Threonine dehydratase

346

438

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2gn2-assembly1.cif.gz_A crystal structure of tetrameric biodegradative threonine deaminase (tdcb) from salmonella typhimurium in complex with cmp at 2.5a resolution (hexagonal form) 0.9522 15 333
3iau-assembly1.cif.gz_A the structure of the processed form of threonine deaminase isoform 2 from solanum lycopersicum 0.9412 18 337
2zpu-assembly1.cif.gz_A crystal structure of modified serine racemase from s.pombe. 0.9383 14 333
1ve5-assembly1.cif.gz_A crystal structure of t.th. hb8 threonine deaminase 0.9307 16 324
1ve5-assembly1.cif.gz_C crystal structure of t.th. hb8 threonine deaminase 0.9272 16 324
ID Description Score Start End Superfamily
af_Q2FWJ9_55_154_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9914 64 162 3.40.50.1100
af_P9WG95_65_164_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9908 63 162 3.40.50.1100
af_P9WG95_65_164_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9811 63 162 3.40.50.1100
af_Q2FWJ9_55_154_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9719 64 162 3.40.50.1100
2gn1B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9709 65 160 3.40.50.1100
ID Description Score Start End GO Terms
AF-A0A075UK26-F1-model_v4 L-threonine dehydratase (EC 4.3.1.19) (Threonine deaminase) 0.9914 16 426 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170
AF-A0A075UK26-F1-model_v4 L-threonine dehydratase (EC 4.3.1.19) (Threonine deaminase) 0.9866 16 426 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170
AF-C8XDB7-F1-model_v4 L-threonine dehydratase (EC 4.3.1.19) (Threonine deaminase) 0.9863 15 426 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
AF-A0A101EPE9-F1-model_v4 L-threonine ammonia-lyase 0.9836 18 109 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170
AF-F1YHP4-F1-model_v4 L-threonine dehydratase biosynthetic IlvA (EC 4.3.1.19) (Threonine deaminase) 0.9835 32 426 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170

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pLDDT pTM Quality
91.04 0.88 High
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Predicted Structure (AlphaFold2)

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