F180939

General Info

Members Datasets Scaffolds Average Seq Length
140 118 108 1024

Family's Representative Sequence

Representative Sequence 3300053096|Ga0500641_0000436|Ga0500641_0000436_11031_14315
Length 1077
Sequence VSRLHEEITFESEICTVLASKGWLYSVGDGQAYDRKRALFPADLVAWVQETQPKAWESLAKLHGASAETLLLDRVRKSLDDRGTLDVIRNGVDTIGVRGTMAMAQFKPAMGMTPEIVARYRANRLRVVRQVRYSLANENCIDLVLFLNGIPVATVELKTDFTQSVEDAVDQYRYDRLPQQKGHEREPLLSFPSGALVHFAVSNREVMMTTRLAGPATVFLPFNQGDHGGKGNPVLPFGHPTSYLWTEVWQRDSWLELLGRYLVTQRDEKKNIKSVIFPRYHQLDVTRKLQAAVLGEGVGGKYLVQHSAGSGKTNSIAWTAHFLSELHDANDEKMFATVIVVSDRRVIDGQLQDALFDFQRTTGVVETIKSDSGSKSSQLADALKAGKKIIVCTIQTFPYALQAVRDLAATEGKRFAVIADEAHSSQTGDAAAKLKEVLSPEEIRELEDGGEIDTEDLLAAQMTARASDTGVTYVAFTATPKAKTLQLFGRPQGPDQLPAAFHIYSMRQAIEEGFILDVLKNNTPYKLAFKLAHAGDELDDAEVERSAAVKGIMQWVSLHPYNIVQKVQIVVEHFRENVEPLLDGKAKAMVVLGSRKEAVRWKLAIDKYIKGKGYPLGTLVAFSGEVNDAESSPDPLSETSRQLNPNLKGRDIRDAFKAEEYHLLLVANKFQTGFDQPLLCGMYVDRRLAGVQAVQTLSRLNRSHPGKDTTYVLDFVNSSDEVLAAFRTYYETAELEGVTDPNIVYDLRAKLDAGGWYDSFEVDRLAAVVMNPKATQGDLAGAVGPVADRLLKRFAAAKQAKAQAEDLEDAKAAGAAFDEMNALSMFKADAQTFIRIYTFLSQMFDYGNTDIEKRFLFFRYLVRLLDFGRERISVDVSQLHLTHHALKALGKQPMALAGDAPKIAPVGDAGSGTIQEKQRALLREIIERVNDLFNGELSDGDQLVMQAMNNSKSQFAASPTLDNELLNAIIDALDAHQKMSQQALGSGTVRAGLKDILLGPGELYEQLRRRAGAQAGIRELSRVALRVPKRAGDHELPAGSTGTVVHVYEKAVAYEVEFVRPFHAVLTLEGSELESLN

Samples

Sample ID Description Type Environment
1 2513237162 Rhizobium ruizarguesonis GB30 Isolate Nodule
2 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
3 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
4 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
5 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
6 2643221564 Mesorhizobium sp. Root157 Isolate Unclassified
7 2816332527 Bradyrhizobium diazoefficiens Y21 Isolate Nodule
8 2824773399 Bradyrhizobium sp. HAMBI 2130 Isolate Unclassified
9 2838042994 Rhizobium esperanzae SEMIA 4089 Isolate Nodule
10 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
11 2844002411 Mesorhizobium sp. M7D.F.Ca.US.005.01.1.1 Isolate Nodule
12 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
13 2869234852 Mesorhizobium sp. M7A.T.Ca.US.000.02.2.1 Isolate Nodule
14 2874109183 Mesorhizobium sp. M7A.T.Ca.TU.009.02.1.1 Isolate Nodule
15 2878730984 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.1 Isolate Nodule
16 2879083081 Bradyrhizobium zhanjiangense CCBAU 51787 Isolate Unclassified
17 2888378607 Bradyrhizobium sp. LCT2 Isolate Unclassified
18 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
19 2903513507 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.2 Isolate Nodule
20 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
21 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
22 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
23 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
24 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
25 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
26 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
27 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
28 2970510686 Mesorhizobium sp. M7A.F.Ca.MR.148.00.0.0 Isolate Nodule
29 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
30 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
31 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere
32 3300002070 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 Metagenome Rhizosphere
33 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
34 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
35 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
36 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
37 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
38 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
39 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
40 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
41 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
42 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
43 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
44 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
45 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
46 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
47 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
48 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
49 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
52 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
53 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
56 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
57 3300009978 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
64 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
65 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
81 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
82 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
85 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
86 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
87 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
88 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
93 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
94 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
95 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
96 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
97 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
100 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
114 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
115 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
116 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
117 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
118 8034962539 Pseudomonas sediminis PI11 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.14
Metatranscriptomes 0
Isolates 22.86

Biome Distribution

Category Percentage (%)
Aerial Root 1.43
Bulb 0
Endosphere 10.71
Nodule 12.86
Rhizoplane 1.43
Rhizosphere 64.29
Stem 0
Stem Tuber 0
Unclassified 9.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24750J21931_1000066 3300002070 Bacteria 15170
2 JGI25151J46595_10001789 3300003187 Bacteria 13899
3 rootH2_10004632 3300003320 Bacteria 27028
4 Ga0055530_10000895 3300003791 Bacteria 24527
5 Ga0055531_10001114 3300003794 Bacteria 20874
6 Ga0070658_10002392 3300005327 Bacteria 15727
7 Ga0070690_100000016 3300005330 Bacteria 85515
8 Ga0070666_10000011 3300005335 Bacteria 261736
9 Ga0070666_10007100 3300005335 Bacteria 6906
10 Ga0070671_100000343 3300005355 Bacteria 31975
11 Ga0070667_100001464 3300005367 Bacteria 21144
12 Ga0070708_100022802 3300005445 Bacteria 5315
13 Ga0070681_10018217 3300005458 Bacteria 7020
14 Ga0070679_100004945 3300005530 Bacteria 12296
15 Ga0070697_100012304 3300005536 Bacteria 6702
16 Ga0070686_100000001 3300005544 Bacteria 515830
17 Ga0070665_100004022 3300005548 Bacteria 15481
18 Ga0068852_100003193 3300005616 Bacteria 11446
19 Ga0068864_100000827 3300005618 Bacteria 26094
20 Ga0068863_100000515 3300005841 Bacteria 39374
21 Ga0068860_100000030 3300005843 Bacteria 256364
22 Ga0075362_10008371 3300006177 Bacteria 3952
23 Ga0075370_10000013 3300006353 Bacteria 64052
24 Ga0105240_10002020 3300009093 Bacteria 33471
25 Ga0105240_10002239 3300009093 Bacteria 31446
26 Ga0105248_10000468 3300009177 Bacteria 45955
27 Ga0105249_10000016 3300009553 Bacteria 278643
28 Ga0105249_10000469 3300009553 Bacteria 37523
29 Ga0105249_10005848 3300009553 Bacteria 10642
30 Ga0105148_100307 3300009978 Bacteria 6348
31 Ga0157370_10001615 3300013104 Bacteria 27859
32 Ga0157370_10006439 3300013104 Bacteria 12953
33 Ga0157369_10029794 3300013105 Bacteria 6028
34 Ga0157372_10000513 3300013307 Bacteria 42634
35 Ga0157372_10007703 3300013307 Bacteria 11452
36 Ga0157372_10027269 3300013307 Bacteria 6219
37 Ga0182006_1001100 3300015261 Bacteria 17305
38 Ga0163161_10000044 3300017792 Bacteria 132739
39 Ga0213872_10000248 3300021361 Bacteria 47632
40 Ga0209129_1000504 3300025258 Bacteria 28184
41 Ga0209025_1001627 3300025294 Bacteria 28060
42 Ga0209564_1004111 3300025295 Bacteria 9150
43 Ga0209050_1000053 3300025298 Bacteria 349521
44 Ga0209257_1000705 3300025304 Bacteria 51728
45 Ga0207680_10000008 3300025903 Bacteria 518177
46 Ga0207707_10000308 3300025912 Bacteria 51301
47 Ga0207707_10013751 3300025912 Bacteria 7057
48 Ga0207695_10004139 3300025913 Bacteria 19919
49 Ga0207695_10012189 3300025913 Bacteria 10331
50 Ga0207652_10010193 3300025921 Bacteria 7565
51 Ga0207644_10000262 3300025931 Bacteria 35454
52 Ga0207711_10006231 3300025941 Bacteria 10067
53 Ga0207712_10000009 3300025961 Bacteria 518177
54 Ga0207712_10000957 3300025961 Bacteria 20795
55 Ga0207658_10000305 3300025986 Bacteria 50588
56 Ga0207641_10000759 3300026088 Bacteria 34711
57 Ga0207676_10000265 3300026095 Bacteria 45580
58 Ga0207698_10000868 3300026142 Bacteria 17518
59 Ga0209389_1000147 3300027296 Bacteria 60189
60 Ga0209489_100875 3300027361 Bacteria 60189
61 Ga0268266_10000620 3300028379 Bacteria 48325
62 Ga0268264_10000003 3300028381 Bacteria 1141976
63 Ga0265330_10001903 3300031235 Bacteria 11616
64 Ga0265327_10016431 3300031251 Bacteria 4701
65 Ga0265314_10000597 3300031711 Bacteria 45481
66 Ga0265314_10011920 3300031711 Bacteria 7137
67 Ga0265314_10033571 3300031711 Bacteria 3760
68 Ga0373935_0000047 3300035692 Bacteria 48637
69 Ga0373947_0000604 3300035725 Bacteria 21147
70 Ga0395901_0015842 3300038443 Bacteria 7684
71 Ga0436361_0661766 3300039447 Bacteria 37529
72 Ga0436361_0873681 3300039447 Bacteria 35839
73 Ga0451577_0003622 3300042876 Bacteria 16978
74 Ga0453684_0001510 3300044712 Bacteria 65352
75 Ga0453684_0002892 3300044712 Bacteria 40269
76 Ga0453684_0025304 3300044712 Bacteria 8624
77 Ga0495650_0002394 3300046471 Bacteria 15319
78 Ga0495596_0009063 3300046500 Bacteria 4401
79 Ga0495643_0000252 3300046522 Bacteria 78817
80 Ga0495681_0002374 3300047470 Bacteria 13501
81 Ga0496105_0030813 3300048908 Bacteria 4397
82 Ga0496115_0023223 3300048918 Bacteria 4812
83 Ga0496121_0006966 3300048924 Bacteria 13758
84 Ga0496124_0004884 3300048927 Bacteria 15423
85 Ga0496125_0022079 3300048928 Bacteria 5917
86 Ga0501031_0000357 3300049568 Bacteria 26647
87 Ga0501032_0001691 3300049569 Bacteria 17484
88 Ga0501032_0004205 3300049569 Bacteria 10897
89 Ga0501034_0000680 3300049571 Bacteria 51662
90 Ga0501034_0001905 3300049571 Bacteria 26410
91 Ga0501034_0003679 3300049571 Bacteria 17331
92 Ga0501043_0000996 3300049579 Bacteria 24899
93 Ga0501046_0004245 3300049580 Bacteria 13040
94 Ga0501047_0001035 3300049581 Bacteria 27861
95 Ga0501047_0032543 3300049581 Bacteria 5034
96 Ga0501070_0000587 3300049586 Bacteria 33165
97 Ga0501070_0026346 3300049586 Bacteria 4879
98 Ga0501072_0008436 3300049588 Bacteria 7821
99 Ga0501080_0008410 3300049742 Bacteria 9347
100 Ga0501035_0000078 3300049822 Bacteria 119888
101 Ga0501035_0000911 3300049822 Bacteria 31301
102 Ga0501035_0046671 3300049822 Bacteria 3896
103 Ga0501044_0034258 3300049823 Bacteria 5327
104 nmdc:mga03683_5570_c1 3300050489 Bacteria 4259
105 nmdc:mga07m45_1_c1 3300050496 Bacteria 485809
106 Ga0500643_002894 3300053087 Bacteria 8537
107 Ga0500641_0000436 3300053096 Bacteria 15126
108 Ga0500642_0000546 3300053130 Bacteria 11391

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2903513507 2903520971 810
2 3300009093 Ga0105240_10002020 Ga0105240_1000202016 945
3 3300025913 Ga0207695_10012189 Ga0207695_100121892 945
4 3300003320 rootH2_10004632 rootH2_100046325 951
5 3300048927 Ga0496124_0004884 Ga0496124_0004884_5955_9065 957
6 iso_pu_bacteria 2842333319 2842340367 957
7 3300013104 Ga0157370_10006439 Ga0157370_100064396 959
8 3300044712 Ga0453684_0002892 Ga0453684_0002892_35868_38993 961
9 3300021361 Ga0213872_10000248 Ga0213872_100002487 962
10 3300039447 Ga0436361_0873681 Ga0436361_0873681_22493_25639 962
11 3300009177 Ga0105248_10000468 Ga0105248_1000046831 968
12 3300009553 Ga0105249_10000469 Ga0105249_1000046914 968
13 3300025941 Ga0207711_10006231 Ga0207711_100062315 968
14 3300025961 Ga0207712_10000957 Ga0207712_100009572 968
15 3300046471 Ga0495650_0002394 Ga0495650_0002394_9137_12259 968
16 3300047470 Ga0495681_0002374 Ga0495681_0002374_1320_4442 968
17 3300048928 Ga0496125_0022079 Ga0496125_0022079_2140_5256 968
18 3300005548 Ga0070665_100004022 Ga0070665_1000040225 969
19 3300028379 Ga0268266_10000620 Ga0268266_1000062044 969
20 3300049569 Ga0501032_0001691 Ga0501032_0001691_13935_17057 970
21 3300009978 Ga0105148_100307 Ga0105148_1003074 972
22 3300049822 Ga0501035_0000078 Ga0501035_0000078_112942_116061 972
23 3300053096 Ga0500641_0000436 Ga0500641_0000436_11031_14315 973
24 3300039447 Ga0436361_0661766 Ga0436361_0661766_13934_17074 974
25 3300049571 Ga0501034_0003679 Ga0501034_0003679_10239_13325 974
26 3300046522 Ga0495643_0000252 Ga0495643_0000252_33502_36609 975
27 3300049571 Ga0501034_0001905 Ga0501034_0001905_9707_12829 975
28 3300049580 Ga0501046_0004245 Ga0501046_0004245_5249_8371 975
29 3300049581 Ga0501047_0001035 Ga0501047_0001035_14044_17166 975
30 3300049742 Ga0501080_0008410 Ga0501080_0008410_3522_6644 975
31 3300049823 Ga0501044_0034258 Ga0501044_0034258_810_3932 975
32 3300003187 JGI25151J46595_10001789 JGI25151J46595_100017896 976
33 3300025258 Ga0209129_1000504 Ga0209129_10005045 976
34 3300025294 Ga0209025_1001627 Ga0209025_10016276 976
35 3300025912 Ga0207707_10000308 Ga0207707_1000030843 978
36 3300027296 Ga0209389_1000147 Ga0209389_100014773 978
37 3300027361 Ga0209489_100875 Ga0209489_10087573 978
38 3300031711 Ga0265314_10000597 Ga0265314_100005973 978
39 3300048908 Ga0496105_0030813 Ga0496105_0030813_138_3251 978
40 3300005536 Ga0070697_100012304 Ga0070697_1000123047 979
41 3300049822 Ga0501035_0046671 Ga0501035_0046671_362_3499 979
42 3300035692 Ga0373935_0000047 Ga0373935_0000047_15353_18520 980
43 3300035725 Ga0373947_0000604 Ga0373947_0000604_12150_15317 980
44 3300053087 Ga0500643_002894 Ga0500643_002894_3680_6796 980
45 3300049586 Ga0501070_0000587 Ga0501070_0000587_28490_31630 982
46 iso_pu_bacteria 2928531327 2928531528 983
47 3300005458 Ga0070681_10018217 Ga0070681_100182175 984
48 3300005530 Ga0070679_100004945 Ga0070679_1000049453 984
49 3300013104 Ga0157370_10001615 Ga0157370_100016157 984
50 3300025295 Ga0209564_1004111 Ga0209564_10041113 984
51 3300025912 Ga0207707_10013751 Ga0207707_100137515 984
52 3300025921 Ga0207652_10010193 Ga0207652_100101933 984
53 iso_pu_bacteria 2998344455 2998346362 984
54 3300009093 Ga0105240_10002239 Ga0105240_1000223912 985
55 3300025913 Ga0207695_10004139 Ga0207695_1000413912 985
56 iso_pu_bacteria 2643221562 2643829932 985
57 3300006353 Ga0075370_10000013 Ga0075370_1000001326 986
58 3300031711 Ga0265314_10011920 Ga0265314_100119203 986
59 3300050496 nmdc:mga07m45_1_c1 nmdc:mga07m45_1_c1_89860_92937 986
60 iso_pu_bacteria 2879083081 2879089324 986
61 3300049586 Ga0501070_0026346 Ga0501070_0026346_1011_4121 988
62 3300003791 Ga0055530_10000895 Ga0055530_100008956 989
63 3300003794 Ga0055531_10001114 Ga0055531_100011146 989
64 3300025298 Ga0209050_1000053 Ga0209050_100005341 989
65 3300025304 Ga0209257_1000705 Ga0209257_10007057 989
66 3300044712 Ga0453684_0025304 Ga0453684_0025304_4307_7417 989
67 3300049568 Ga0501031_0000357 Ga0501031_0000357_21061_24171 989
68 3300049579 Ga0501043_0000996 Ga0501043_0000996_11509_14619 989
69 3300049581 Ga0501047_0032543 Ga0501047_0032543_1124_4234 989
70 3300049822 Ga0501035_0000911 Ga0501035_0000911_17904_21014 989
71 3300053130 Ga0500642_0000546 Ga0500642_0000546_3752_6865 989
72 3300049571 Ga0501034_0000680 Ga0501034_0000680_112_3207 990
73 iso_pu_bacteria 2585428106 2587916036 990
74 3300048918 Ga0496115_0023223 Ga0496115_0023223_1168_4296 991
75 iso_pu_bacteria 2513237162 2514023404 991
76 iso_pu_bacteria 2524023207 2524450653 991
77 iso_pu_bacteria 2838042994 2838048788 991
78 iso_pu_bacteria 2844002411 2844005647 991
79 iso_pu_bacteria 2869234852 2869238590 991
80 iso_pu_bacteria 2874109183 2874109672 991
81 iso_pu_bacteria 2878730984 2878734444 991
82 iso_pu_bacteria 2896384573 2896392249 991
83 iso_pu_bacteria 2916000859 2916000988 991
84 iso_pu_bacteria 2924179722 2924183585 991
85 iso_pu_bacteria 2957382221 2957384731 991
86 iso_pu_bacteria 2957402308 2957404794 991
87 iso_pu_bacteria 2970095765 2970101970 991
88 iso_pu_bacteria 2970510686 2970511265 991
89 iso_pu_bacteria 2984555340 2984556452 991
90 iso_pu_bacteria 2993356040 2993356451 991
91 iso_pu_bacteria 8034962539 8034966558 991
92 iso_pu_bacteria 2597490356 2599105971 992
93 iso_pu_bacteria 2643221564 2643838791 992
94 iso_pu_bacteria 2816332527 2818238485 992
95 iso_pu_bacteria 2824773399 2824774564 992
96 iso_pu_bacteria 2846952575 2846955761 992
97 iso_pu_bacteria 2888378607 2888385637 992
98 iso_pu_bacteria 2919138771 2919142731 992
99 3300009553 Ga0105249_10005848 Ga0105249_100058487 993
100 3300013307 Ga0157372_10000513 Ga0157372_1000051320 993
101 3300031251 Ga0265327_10016431 Ga0265327_100164312 994
102 3300005335 Ga0070666_10007100 Ga0070666_100071004 995
103 3300005616 Ga0068852_100003193 Ga0068852_1000031937 995
104 3300005841 Ga0068863_100000515 Ga0068863_10000051518 995
105 3300013105 Ga0157369_10029794 Ga0157369_100297944 995
106 3300013307 Ga0157372_10007703 Ga0157372_100077037 995
107 3300015261 Ga0182006_1001100 Ga0182006_100110014 995
108 3300026088 Ga0207641_10000759 Ga0207641_1000075911 995
109 3300026142 Ga0207698_10000868 Ga0207698_100008687 995
110 3300031235 Ga0265330_10001903 Ga0265330_100019039 995
111 3300046500 Ga0495596_0009063 Ga0495596_0009063_667_3762 995
112 3300048924 Ga0496121_0006966 Ga0496121_0006966_8188_11310 995
113 3300049569 Ga0501032_0004205 Ga0501032_0004205_6961_10089 995
114 iso_pu_bacteria 2919166419 2919171042 995
115 3300002070 JGI24750J21931_1000066 JGI24750J21931_10000666 996
116 3300005327 Ga0070658_10002392 Ga0070658_100023924 996
117 3300005330 Ga0070690_100000016 Ga0070690_10000001654 996
118 3300005335 Ga0070666_10000011 Ga0070666_1000001118 996
119 3300005355 Ga0070671_100000343 Ga0070671_1000003435 996
120 3300005367 Ga0070667_100001464 Ga0070667_10000146421 996
121 3300005445 Ga0070708_100022802 Ga0070708_1000228024 996
122 3300005544 Ga0070686_100000001 Ga0070686_100000001501 996
123 3300005618 Ga0068864_100000827 Ga0068864_10000082712 996
124 3300005843 Ga0068860_100000030 Ga0068860_100000030240 996
125 3300006177 Ga0075362_10008371 Ga0075362_100083713 996
126 3300009553 Ga0105249_10000016 Ga0105249_10000016241 996
127 3300013307 Ga0157372_10027269 Ga0157372_100272692 996
128 3300017792 Ga0163161_10000044 Ga0163161_1000004489 996
129 3300025903 Ga0207680_10000008 Ga0207680_10000008493 996
130 3300025931 Ga0207644_10000262 Ga0207644_1000026238 996
131 3300025961 Ga0207712_10000009 Ga0207712_10000009493 996
132 3300025986 Ga0207658_10000305 Ga0207658_1000030523 996
133 3300026095 Ga0207676_10000265 Ga0207676_100002653 996
134 3300028381 Ga0268264_10000003 Ga0268264_100000031115 996
135 3300031711 Ga0265314_10033571 Ga0265314_100335712 996
136 3300038443 Ga0395901_0015842 Ga0395901_0015842_1006_4116 996
137 3300042876 Ga0451577_0003622 Ga0451577_0003622_9038_12151 996
138 3300044712 Ga0453684_0001510 Ga0453684_0001510_57071_60184 996
139 3300049588 Ga0501072_0008436 Ga0501072_0008436_4372_7518 996
140 3300050489 nmdc:mga03683_5570_c1 nmdc:mga03683_5570_c1_870_3944 996

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04313

HSDR_N

Type I restriction enzyme R protein N terminus (HSDR_N)

48

217

0.92

PF22679

UvrB_D3-like

UvrB domain 3

637

717

0.85

PF16277

DUF4926

Domain of unknown function (DUF4926)

1019

1074

0.83

PF18766

SWI2_SNF2

SWI2/SNF2 ATPase

281

550

0.76

PF04851

ResIII

Type III restriction enzyme, res subunit

276

482

0.74

PF00270

DEAD

DEAD/DEAH box helicase

287

488

0.63

Structural Annotation

Top 5 Hits

ID Description Score Start End
4nl8-assembly1.cif.gz_A pria helicase bound to ssb c-terminal tail peptide 0.665 275 480
7ddx-assembly1.cif.gz_B crystal structure of kank1 s1179f mutant in complex wtih eif4a1 0.6013 270 481
7pmq-assembly1.cif.gz_C dead-box helicase dbpa in the active conformation bound to a hairpin loop rna and adp/bef3 0.5858 275 733
1vec-assembly1.cif.gz_A crystal structure of the n-terminal domain of rck/p54, a human dead-box protein 0.5858 271 503
6znp-assembly2.cif.gz_B crystal structure of duf1998 helicase mrfa bound to dna 0.5852 267 732
ID Description Score Start End Superfamily
af_Q54DI3_630_820_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7379 292 482 3.40.50.300
af_Q2G1G2_65_238_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.7288 84 266 3.90.1570.50
af_Q58611_92_243_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.7035 96 262 3.90.1570.50
af_Q2G1G2_65_238_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.6847 84 266 3.90.1570.50
af_F1LYB7_246_509_3.40.50.10810 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain 0.6844 272 475 3.40.50.10810
ID Description Score Start End GO Terms
AF-A0A355G6I8-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9637 1 279 GO:0003677
GO:0005524
GO:0009035
GO:0009307
AF-A0A5E4KSM4-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9609 103 252 GO:0003677
GO:0004519
GO:0005524
GO:0009307
AF-A0A257GYG4-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9557 1 220 GO:0003677
GO:0005524
GO:0009035
GO:0009307
AF-A0A528MD88-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9551 1 190 GO:0003677
GO:0005524
GO:0009035
GO:0009307
AF-A0A1W6LBU2-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9534 1 208 GO:0003677
GO:0005524
GO:0009035
GO:0009307

Feature Viewer

pLDDT pTM Quality
68.62 0.58 Medium
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Predicted Structure (AlphaFold2)

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