F180800

General Info

Members Datasets Scaffolds Average Seq Length
140 106 140 173

Family's Representative Sequence

Representative Sequence 3300049584|Ga0501068_0063374|Ga0501068_0063374_157_753
Length 198
Sequence MDSGAPPDHVGVGRNDGPMPETPRAIAVADLIDRFNATIGRAVAWAVLFVVLVQFAVVVLRYAFGIGSIWLSESILYGNAVMFMLAAAWTLQQGGHVRVDVFYAEASPRRKALIDLVGALLLLLPFMLALIWLSLPYVARSWAILERSRETSGLPAVFLLKTLIPLFAVLLALQGVSQAIRAAELLRLSRGESQHAPR

Samples

Sample ID Description Type Environment
1 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
17 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
20 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
21 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
22 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
35 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
44 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
45 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
46 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
47 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
52 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
53 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
55 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
56 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
57 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
58 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
59 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
60 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
61 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
64 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
68 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
69 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
70 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
71 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
72 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
76 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
77 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
78 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
79 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
80 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
81 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
82 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
86 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
90 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
91 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
92 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
93 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
94 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
95 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
96 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
97 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
98 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
99 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
100 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
101 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
102 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
103 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
104 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
105 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
106 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0.71
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25
Nodule 0
Rhizoplane 4.29
Rhizosphere 68.57
Stem 0
Stem Tuber 0
Unclassified 2.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070677_10294704 3300005333 Bacteria 822
2 Ga0070680_100114812 3300005336 Bacteria 2243
3 Ga0070682_100350323 3300005337 Bacteria 1101
4 Ga0070689_100863885 3300005340 Bacteria 799
5 Ga0070709_10438706 3300005434 Bacteria 982
6 Ga0070714_100488574 3300005435 Bacteria 1173
7 Ga0070713_100252897 3300005436 Bacteria 1608
8 Ga0070713_100858867 3300005436 Bacteria 872
9 Ga0070701_10415988 3300005438 Bacteria 855
10 Ga0070711_100220876 3300005439 Bacteria 1473
11 Ga0070662_101015575 3300005457 Bacteria 710
12 Ga0070681_10007411 3300005458 Bacteria 10728
13 Ga0070681_10403270 3300005458 Bacteria 1279
14 Ga0068855_100321980 3300005563 Bacteria 1709
15 Ga0081538_10018158 3300005981 Bacteria 5300
16 Ga0081539_10004945 3300005985 Bacteria 14165
17 Ga0081539_10023930 3300005985 Bacteria 3983
18 Ga0075365_10128261 3300006038 Bacteria 1754
19 Ga0075365_10166812 3300006038 Bacteria 1536
20 Ga0075365_10586925 3300006038 Bacteria 788
21 Ga0075368_10105418 3300006042 Bacteria 1160
22 Ga0075363_100189195 3300006048 Bacteria 1173
23 Ga0075364_10161536 3300006051 Bacteria 1512
24 Ga0075362_10067889 3300006177 Bacteria 1623
25 Ga0075362_10096328 3300006177 Bacteria 1379
26 Ga0075362_10245689 3300006177 Bacteria 879
27 Ga0075367_10068614 3300006178 Bacteria 2127
28 Ga0075367_10380024 3300006178 Bacteria 892
29 Ga0075369_10041822 3300006186 Bacteria 1963
30 Ga0075369_10085703 3300006186 Bacteria 1401
31 Ga0075369_10102567 3300006186 Bacteria 1284
32 Ga0075366_10048755 3300006195 Bacteria 2512
33 Ga0075366_10052878 3300006195 Bacteria 2413
34 Ga0075366_10284061 3300006195 Bacteria 1011
35 Ga0075370_10075363 3300006353 Bacteria 1934
36 Ga0075370_10109388 3300006353 Bacteria 1604
37 Ga0075370_10484842 3300006353 Bacteria 745
38 Ga0075370_10534690 3300006353 Bacteria 708
39 Ga0075428_100562495 3300006844 Bacteria 1219
40 Ga0075430_100129196 3300006846 Bacteria 2106
41 Ga0075435_100116518 3300007076 Bacteria 2226
42 Ga0075435_100441597 3300007076 Bacteria 1122
43 Ga0111539_10022683 3300009094 Bacteria 7711
44 Ga0105242_10523524 3300009176 Bacteria 1132
45 Ga0105237_10109458 3300009545 Bacteria 2755
46 Ga0105238_12058459 3300009551 Bacteria 605
47 Ga0157369_10577005 3300013105 Bacteria 1162
48 Ga0157374_10962071 3300013296 Bacteria 872
49 Ga0157378_11159483 3300013297 Bacteria 811
50 Ga0213875_10000046 3300021388 Bacteria 149850
51 Ga0207699_10441690 3300025906 Bacteria 932
52 Ga0207707_10020936 3300025912 Bacteria 5714
53 Ga0207707_10371096 3300025912 Bacteria 1231
54 Ga0207660_10466511 3300025917 Bacteria 1022
55 Ga0207700_10409868 3300025928 Bacteria 1189
56 Ga0207706_10207618 3300025933 Bacteria 1717
57 Ga0207706_10402129 3300025933 Bacteria 1187
58 Ga0207686_10161170 3300025934 Bacteria 1572
59 Ga0207648_10574251 3300026089 Bacteria 1037
60 Ga0207698_10527440 3300026142 Bacteria 1153
61 Ga0207428_10232066 3300027907 Bacteria 1381
62 Ga0265330_10146743 3300031235 Bacteria 1003
63 Ga0265332_10000874 3300031238 Bacteria 18256
64 Ga0265329_10039190 3300031242 Bacteria 1523
65 Ga0265340_10015014 3300031247 Bacteria 4033
66 Ga0265339_10005047 3300031249 Bacteria 8870
67 Ga0265331_10093610 3300031250 Bacteria 1388
68 Ga0307408_100847754 3300031548 Bacteria 833
69 Ga0265342_10000567 3300031712 Bacteria 39023
70 Ga0307416_100394146 3300032002 Bacteria 1420
71 Ga0316593_10008406 3300032168 Bacteria 2878
72 Ga0373926_0310942 3300035083 Bacteria 616
73 Ga0373936_0078192 3300035113 Bacteria 1373
74 Ga0373945_0255426 3300035116 Bacteria 741
75 Ga0373943_0545608 3300035170 Bacteria 680
76 Ga0373931_0489959 3300035691 Bacteria 791
77 Ga0373935_0150432 3300035692 Bacteria 1579
78 Ga0373947_0067953 3300035725 Bacteria 2178
79 Ga0373947_0257669 3300035725 Bacteria 1155
80 Ga0316582_0002540 3300036647 Bacteria 8628
81 Ga0373925_0074552 3300037068 Bacteria 2570
82 Ga0316581_0000976 3300037588 Bacteria 6093
83 Ga0436364_0413224 3300037853 Bacteria 42823
84 Ga0436364_0780096 3300037853 Unclassified 720
85 Ga0451576_0002594 3300045051 Bacteria 26518
86 Ga0495618_0444420 3300046514 Bacteria 788
87 Ga0495635_0302734 3300046663 Bacteria 1072
88 Ga0496111_0085251 3300048914 Bacteria 2310
89 Ga0496112_1094916 3300048915 Unclassified 715
90 Ga0496114_0332992 3300048917 Bacteria 1342
91 Ga0496115_0049547 3300048918 Bacteria 3363
92 Ga0496115_0244411 3300048918 Bacteria 1479
93 Ga0496115_0948966 3300048918 Bacteria 660
94 Ga0501033_0185695 3300049570 Bacteria 1489
95 Ga0501034_0394400 3300049571 Bacteria 1307
96 Ga0501047_0125552 3300049581 Bacteria 2446
97 Ga0501047_0331783 3300049581 Bacteria 1359
98 Ga0501047_0376586 3300049581 Bacteria 1254
99 Ga0501068_0063374 3300049584 Bacteria 2249
100 Ga0501070_0004140 3300049586 Bacteria 12486
101 Ga0501072_0018407 3300049588 Bacteria 5378
102 Ga0501072_1028283 3300049588 Unclassified 642
103 Ga0501072_1109734 3300049588 Bacteria 615
104 Ga0501073_0204816 3300049589 Bacteria 1364
105 Ga0501073_0357389 3300049589 Bacteria 1009
106 Ga0501074_0637552 3300049590 Unclassified 753
107 Ga0501076_0587082 3300049592 Bacteria 919
108 Ga0501081_0248572 3300049743 Bacteria 1298
109 Ga0501081_0694820 3300049743 Bacteria 764
110 Ga0501083_0018477 3300049744 Bacteria 4858
111 Ga0501035_0053391 3300049822 Bacteria 3614
112 Ga0501035_0252441 3300049822 Bacteria 1497
113 Ga0501044_0090623 3300049823 Bacteria 3084
114 Ga0501045_0328603 3300049824 Bacteria 1138
115 nmdc:mga03683_521415_c1 3300050489 Bacteria 577
116 nmdc:mga03683_81038_c1 3300050489 Bacteria 1401
117 nmdc:mga00v17_442828_c1 3300050491 Bacteria 844
118 nmdc:mga0yw44_26505_c1 3300050492 Bacteria 3312
119 nmdc:mga0yw44_672203_c1 3300050492 Bacteria 704
120 nmdc:mga0k408_541148_c1 3300050493 Bacteria 689
121 nmdc:mga0k408_98898_c1 3300050493 Bacteria 1719
122 nmdc:mga06z11_300038_c1 3300050494 Bacteria 955
123 nmdc:mga04h51_78995_c1 3300050495 Bacteria 1164
124 nmdc:mga07m45_274165_c1 3300050496 Bacteria 981
125 nmdc:mga05p37_1696673_c1 3300050507 Bacteria 616
126 nmdc:mga09592_563093_c1 3300050508 Bacteria 978
127 nmdc:mga0qj67_209425_c1 3300050509 Bacteria 1584
128 nmdc:mga08y16_29877_c1 3300050511 Bacteria 5739
129 nmdc:mga0n895_143350_c1 3300050512 Bacteria 2418
130 nmdc:mga0rr50_369493_c1 3300050513 Bacteria 1208
131 nmdc:mga0rr50_53467_c1 3300050513 Bacteria 3004
132 nmdc:mga08x19_259733_c1 3300050514 Bacteria 1200
133 nmdc:mga0sz30_40294_c1 3300050516 Bacteria 1963
134 Ga0495601_0145120 3300053077 Bacteria 1549
135 Ga0500595_016647 3300053119 Bacteria 2733
136 Ga0500658_0147243 3300053134 Bacteria 1060
137 Ga0500627_0010770 3300053158 Bacteria 3348
138 Ga0501084_0275952 3300054114 Bacteria 1419
139 Ga0501082_0218026 3300060353 Bacteria 1660
140 Ga0501082_1172882 3300060353 Bacteria 671

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049743 Ga0501081_0248572 Ga0501081_0248572_14_496 155
2 3300031235 Ga0265330_10146743 Ga0265330_101467432 159
3 3300009551 Ga0105238_12058459 Ga0105238_120584591 162
4 3300049589 Ga0501073_0357389 Ga0501073_0357389_24_551 162
5 3300054114 Ga0501084_0275952 Ga0501084_0275952_568_1116 162
6 3300060353 Ga0501082_0218026 Ga0501082_0218026_14_562 162
7 3300006844 Ga0075428_100562495 Ga0075428_1005624952 163
8 3300009094 Ga0111539_10022683 Ga0111539_100226837 163
9 3300027907 Ga0207428_10232066 Ga0207428_102320662 163
10 3300050508 nmdc:mga09592_563093_c1 nmdc:mga09592_563093_c1_45_566 163
11 3300050511 nmdc:mga08y16_29877_c1 nmdc:mga08y16_29877_c1_2061_2582 163
12 3300006038 Ga0075365_10128261 Ga0075365_101282612 164
13 3300006042 Ga0075368_10105418 Ga0075368_101054182 164
14 3300006178 Ga0075367_10380024 Ga0075367_103800242 164
15 3300006186 Ga0075369_10102567 Ga0075369_101025672 164
16 3300006195 Ga0075366_10052878 Ga0075366_100528782 164
17 3300049589 Ga0501073_0204816 Ga0501073_0204816_703_1212 164
18 3300050493 nmdc:mga0k408_98898_c1 nmdc:mga0k408_98898_c1_987_1493 164
19 3300050495 nmdc:mga04h51_78995_c1 nmdc:mga04h51_78995_c1_201_707 164
20 3300005435 Ga0070714_100488574 Ga0070714_1004885742 165
21 3300005438 Ga0070701_10415988 Ga0070701_104159882 165
22 3300005985 Ga0081539_10023930 Ga0081539_100239305 165
23 3300006038 Ga0075365_10166812 Ga0075365_101668121 165
24 3300006048 Ga0075363_100189195 Ga0075363_1001891952 165
25 3300006051 Ga0075364_10161536 Ga0075364_101615362 165
26 3300006177 Ga0075362_10067889 Ga0075362_100678892 165
27 3300006177 Ga0075362_10245689 Ga0075362_102456892 165
28 3300006178 Ga0075367_10068614 Ga0075367_100686142 165
29 3300006186 Ga0075369_10041822 Ga0075369_100418221 165
30 3300006186 Ga0075369_10085703 Ga0075369_100857032 165
31 3300006195 Ga0075366_10048755 Ga0075366_100487552 165
32 3300006195 Ga0075366_10284061 Ga0075366_102840612 165
33 3300006353 Ga0075370_10075363 Ga0075370_100753632 165
34 3300006353 Ga0075370_10484842 Ga0075370_104848422 165
35 3300006353 Ga0075370_10534690 Ga0075370_105346902 165
36 3300026089 Ga0207648_10574251 Ga0207648_105742511 165
37 3300032002 Ga0307416_100394146 Ga0307416_1003941462 165
38 3300049588 Ga0501072_1028283 Ga0501072_1028283_10_516 165
39 3300049743 Ga0501081_0694820 Ga0501081_0694820_104_616 165
40 3300050507 nmdc:mga05p37_1696673_c1 nmdc:mga05p37_1696673_c1_77_595 165
41 3300035170 Ga0373943_0545608 Ga0373943_0545608_146_655 166
42 3300035691 Ga0373931_0489959 Ga0373931_0489959_84_593 166
43 3300035692 Ga0373935_0150432 Ga0373935_0150432_359_868 166
44 3300035725 Ga0373947_0067953 Ga0373947_0067953_761_1270 166
45 3300005981 Ga0081538_10018158 Ga0081538_100181586 167
46 3300006846 Ga0075430_100129196 Ga0075430_1001291963 167
47 3300037853 Ga0436364_0780096 Ga0436364_0780096_187_702 167
48 3300049570 Ga0501033_0185695 Ga0501033_0185695_110_619 167
49 3300049581 Ga0501047_0125552 Ga0501047_0125552_378_887 167
50 3300049586 Ga0501070_0004140 Ga0501070_0004140_11863_12372 167
51 3300049588 Ga0501072_1109734 Ga0501072_1109734_39_554 167
52 3300049822 Ga0501035_0252441 Ga0501035_0252441_928_1437 167
53 3300049823 Ga0501044_0090623 Ga0501044_0090623_2020_2529 167
54 3300049824 Ga0501045_0328603 Ga0501045_0328603_554_1060 167
55 3300050509 nmdc:mga0qj67_209425_c1 nmdc:mga0qj67_209425_c1_252_767 167
56 3300005434 Ga0070709_10438706 Ga0070709_104387062 168
57 3300005439 Ga0070711_100220876 Ga0070711_1002208762 168
58 3300025906 Ga0207699_10441690 Ga0207699_104416902 168
59 3300035083 Ga0373926_0310942 Ga0373926_0310942_61_582 168
60 3300035116 Ga0373945_0255426 Ga0373945_0255426_179_691 168
61 3300045051 Ga0451576_0002594 Ga0451576_0002594_22746_23291 168
62 3300046514 Ga0495618_0444420 Ga0495618_0444420_241_753 168
63 3300053077 Ga0495601_0145120 Ga0495601_0145120_990_1502 168
64 3300005336 Ga0070680_100114812 Ga0070680_1001148122 169
65 3300005563 Ga0068855_100321980 Ga0068855_1003219802 169
66 3300013105 Ga0157369_10577005 Ga0157369_105770052 169
67 3300026142 Ga0207698_10527440 Ga0207698_105274402 169
68 3300005985 Ga0081539_10004945 Ga0081539_1000494512 170
69 3300006038 Ga0075365_10586925 Ga0075365_105869252 170
70 3300006353 Ga0075370_10109388 Ga0075370_101093882 170
71 3300013297 Ga0157378_11159483 Ga0157378_111594831 170
72 3300021388 Ga0213875_10000046 Ga0213875_1000004653 170
73 3300037853 Ga0436364_0413224 Ga0436364_0413224_16366_16896 170
74 3300048918 Ga0496115_0049547 Ga0496115_0049547_2040_2561 170
75 3300049571 Ga0501034_0394400 Ga0501034_0394400_216_740 170
76 3300049588 Ga0501072_0018407 Ga0501072_0018407_1243_1791 170
77 3300050492 nmdc:mga0yw44_672203_c1 nmdc:mga0yw44_672203_c1_77_604 170
78 3300050496 nmdc:mga07m45_274165_c1 nmdc:mga07m45_274165_c1_314_841 170
79 3300005333 Ga0070677_10294704 Ga0070677_102947041 171
80 3300005337 Ga0070682_100350323 Ga0070682_1003503232 171
81 3300005340 Ga0070689_100863885 Ga0070689_1008638851 171
82 3300005436 Ga0070713_100252897 Ga0070713_1002528972 171
83 3300005436 Ga0070713_100858867 Ga0070713_1008588672 171
84 3300005457 Ga0070662_101015575 Ga0070662_1010155751 171
85 3300005458 Ga0070681_10007411 Ga0070681_100074119 171
86 3300005458 Ga0070681_10403270 Ga0070681_104032702 171
87 3300006177 Ga0075362_10096328 Ga0075362_100963282 171
88 3300007076 Ga0075435_100116518 Ga0075435_1001165182 171
89 3300007076 Ga0075435_100441597 Ga0075435_1004415972 171
90 3300009176 Ga0105242_10523524 Ga0105242_105235242 171
91 3300009545 Ga0105237_10109458 Ga0105237_101094582 171
92 3300013296 Ga0157374_10962071 Ga0157374_109620712 171
93 3300025912 Ga0207707_10020936 Ga0207707_100209362 171
94 3300025912 Ga0207707_10371096 Ga0207707_103710962 171
95 3300025917 Ga0207660_10466511 Ga0207660_104665112 171
96 3300025928 Ga0207700_10409868 Ga0207700_104098682 171
97 3300025933 Ga0207706_10207618 Ga0207706_102076182 171
98 3300025933 Ga0207706_10402129 Ga0207706_104021292 171
99 3300025934 Ga0207686_10161170 Ga0207686_101611702 171
100 3300031238 Ga0265332_10000874 Ga0265332_100008748 171
101 3300031242 Ga0265329_10039190 Ga0265329_100391902 171
102 3300031247 Ga0265340_10015014 Ga0265340_100150144 171
103 3300031249 Ga0265339_10005047 Ga0265339_100050477 171
104 3300031250 Ga0265331_10093610 Ga0265331_100936102 171
105 3300031548 Ga0307408_100847754 Ga0307408_1008477542 171
106 3300031712 Ga0265342_10000567 Ga0265342_1000056725 171
107 3300032168 Ga0316593_10008406 Ga0316593_100084065 171
108 3300035113 Ga0373936_0078192 Ga0373936_0078192_225_773 171
109 3300035725 Ga0373947_0257669 Ga0373947_0257669_17_544 171
110 3300036647 Ga0316582_0002540 Ga0316582_0002540_5012_5566 171
111 3300037068 Ga0373925_0074552 Ga0373925_0074552_965_1492 171
112 3300037588 Ga0316581_0000976 Ga0316581_0000976_5171_5725 171
113 3300046663 Ga0495635_0302734 Ga0495635_0302734_415_942 171
114 3300048914 Ga0496111_0085251 Ga0496111_0085251_1144_1686 171
115 3300048915 Ga0496112_1094916 Ga0496112_1094916_36_551 171
116 3300048917 Ga0496114_0332992 Ga0496114_0332992_304_828 171
117 3300048918 Ga0496115_0244411 Ga0496115_0244411_551_1090 171
118 3300048918 Ga0496115_0948966 Ga0496115_0948966_80_598 171
119 3300049581 Ga0501047_0331783 Ga0501047_0331783_331_972 171
120 3300049581 Ga0501047_0376586 Ga0501047_0376586_466_984 171
121 3300049584 Ga0501068_0063374 Ga0501068_0063374_157_753 171
122 3300049590 Ga0501074_0637552 Ga0501074_0637552_95_625 171
123 3300049592 Ga0501076_0587082 Ga0501076_0587082_85_603 171
124 3300049744 Ga0501083_0018477 Ga0501083_0018477_2345_2863 171
125 3300049822 Ga0501035_0053391 Ga0501035_0053391_1794_2435 171
126 3300050489 nmdc:mga03683_521415_c1 nmdc:mga03683_521415_c1_36_563 171
127 3300050489 nmdc:mga03683_81038_c1 nmdc:mga03683_81038_c1_293_820 171
128 3300050491 nmdc:mga00v17_442828_c1 nmdc:mga00v17_442828_c1_302_829 171
129 3300050492 nmdc:mga0yw44_26505_c1 nmdc:mga0yw44_26505_c1_623_1150 171
130 3300050493 nmdc:mga0k408_541148_c1 nmdc:mga0k408_541148_c1_147_674 171
131 3300050494 nmdc:mga06z11_300038_c1 nmdc:mga06z11_300038_c1_262_789 171
132 3300050512 nmdc:mga0n895_143350_c1 nmdc:mga0n895_143350_c1_357_893 171
133 3300050513 nmdc:mga0rr50_369493_c1 nmdc:mga0rr50_369493_c1_341_877 171
134 3300050513 nmdc:mga0rr50_53467_c1 nmdc:mga0rr50_53467_c1_463_999 171
135 3300050514 nmdc:mga08x19_259733_c1 nmdc:mga08x19_259733_c1_400_936 171
136 3300050516 nmdc:mga0sz30_40294_c1 nmdc:mga0sz30_40294_c1_558_1085 171
137 3300053119 Ga0500595_016647 Ga0500595_016647_1606_2133 171
138 3300053134 Ga0500658_0147243 Ga0500658_0147243_146_673 171
139 3300053158 Ga0500627_0010770 Ga0500627_0010770_497_1021 171
140 3300060353 Ga0501082_1172882 Ga0501082_1172882_10_546 171

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04290

DctQ

Tripartite ATP-independent periplasmic transporters, DctQ component

50

185

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
8thj-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from haemophilus influenzae (antiparallel dimer) 0.7113 16 157
7qha-assembly1.cif.gz_A cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in amphipol 0.7 12 168
7qha-assembly1.cif.gz_A cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in amphipol 0.6584 12 168
8thj-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from haemophilus influenzae (antiparallel dimer) 0.5861 16 157
3zx6-assembly1.cif.gz_B structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant 0.4414 7 168
ID Description Score Start End Superfamily
af_P37674_16_146_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7265 34 166 1.20.120.550
af_P37674_16_146_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7086 34 166 1.20.120.550
af_A0A1D6KYY0_93_329_1.20.58.390 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Neurotransmitter-gated ion-channel transmembrane domain 0.5479 18 86 1.20.58.390
af_A4HRG0_1_184_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.5293 7 72 1.20.1070.10
af_A7E288_21_167_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.4781 55 162 1.20.140.150
ID Description Score Start End GO Terms
AF-A0A3B0SX27-F1-model_v4 TRAP-type C4-dicarboxylate transport system, small permease component 0.9242 7 168 GO:0005886
AF-C6XIU8-F1-model_v4 TRAP transporter small permease protein 0.9236 8 168 GO:0005886
GO:0022857
AF-A0A3D5HGI8-F1-model_v4 C4-dicarboxylate ABC transporter permease 0.9232 4 170 GO:0005886
AF-A0A2E6W4Z7-F1-model_v4 TRAP transporter small permease protein 0.923 7 168 GO:0005886
GO:0022857
AF-A0A7V5EZG8-F1-model_v4 TRAP transporter small permease subunit 0.9216 7 171 GO:0005886

Feature Viewer

pLDDT pTM Quality
84.04 0.78 High
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Predicted Structure (AlphaFold2)

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