F178860

General Info

Members Datasets Scaffolds Average Seq Length
140 124 280 480

Family's Representative Sequence

Representative Sequence 3300005518|Ga0070699_100096939|Ga0070699_1000969392
Length 578
Sequence MYDGPDETWIGAADGLGYHGLHRVVCAPENAARGVEVTPTRRGWGPPDLVYPLTRSARLGSSSLRRREGRRAALADPVSHPPVMPWVIDIDQGPRGEPVFLRIVRAVTEDIRRGRLLAGTRLPGTRTLARSLGVNRNTVVAAFDELVAEGWLTASRASATRVSDTIPEPSGLGAVSPDKPAPLSAARGLGERALVDAGPAINLSAGYPDLSLLPAEQLARAYRRAIKFGPASTLSYSDPRGVPALREAIAEFLSATRGLAAGPSRVMVTRGSQMAFAIVADSLLPPGARIAVEALGYTPAWAAFRRRGGELLPVPIDEEGMQVERLIDLHDRQPVSAVYVTPHHQYPTTVTLSAGRRLRLLDFAARTGVTIIEDDYDHEFAFSGRPTLPLASMDRTGRVIYIGTLSKVFAPGPRVGFLIATEDRIDSFAACRALIDACGDPAIETAVAELFVSGELRRHINRVRTVYARRQQIAVESIERHLRGAVDYRLPSGGTALWLRARDHIDVDKWAAATERRGVSFYPGGRYSLEGTSIPYLRMNFAAVDDSRIVQGIEAMARALDDLPLAGANTYAPTGLPS

Samples

Sample ID Description Type Environment
1 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
9 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
31 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
47 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
49 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
64 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
72 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
75 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
76 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
77 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
78 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
79 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
85 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
86 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
90 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
91 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
92 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
93 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
94 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
95 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
96 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
97 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
98 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
99 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
100 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
101 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
102 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
103 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
104 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
105 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
106 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
107 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
108 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
109 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
110 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
111 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
112 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
113 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
114 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
115 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
116 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
117 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
118 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
119 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
120 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
121 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
122 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
123 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
124 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.57
Metatranscriptomes 0
Isolates 16.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 28.57
Nodule 1.43
Rhizoplane 2.14
Rhizosphere 47.14
Stem 0
Stem Tuber 0
Unclassified 11.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070699_100096939 3300005518 Unclassified 2583
2 JGI24739J22299_10001388 3300001989 Bacteria 9102
3 rootH2_10070503 3300003320 Unclassified 2455
4 rootL2_10011816 3300003322 Bacteria 19645
5 rootH1_10206393 3300003323 Bacteria 3394
6 Ga0055542_1003527 3300003762 Bacteria 4190
7 Ga0055526_1019617 3300003771 Bacteria 2454
8 Ga0055528_1000198 3300003790 Bacteria 51108
9 Ga0055530_10008957 3300003791 Bacteria 3917
10 Ga0055531_10000139 3300003794 Bacteria 82993
11 Ga0065165_1000182 3300005262 Bacteria 110108
12 Ga0065165_1001360 3300005262 Bacteria 26963
13 Ga0065165_1019984 3300005262 Bacteria 2374
14 Ga0070680_100009199 3300005336 Bacteria 7578
15 Ga0070682_100012424 3300005337 Bacteria 4885
16 Ga0070682_100035115 3300005337 Bacteria 3058
17 Ga0070689_100008535 3300005340 Bacteria 7221
18 Ga0070661_100025920 3300005344 Bacteria 4214
19 Ga0070659_100078009 3300005366 Bacteria 2642
20 Ga0070663_100133283 3300005455 Bacteria 1889
21 Ga0070681_10201987 3300005458 Bacteria 1906
22 Ga0070672_100001722 3300005543 Bacteria 13673
23 Ga0068855_100183061 3300005563 Bacteria 2368
24 Ga0068857_100212841 3300005577 Unclassified 1764
25 Ga0068854_100084956 3300005578 Bacteria 2343
26 Ga0068852_100012674 3300005616 Bacteria 6413
27 Ga0068852_100133691 3300005616 Bacteria 2287
28 Ga0075364_10001188 3300006051 Bacteria 13957
29 Ga0075370_10055539 3300006353 Bacteria 2250
30 Ga0075428_100017657 3300006844 Bacteria 7883
31 Ga0075428_100019810 3300006844 Bacteria 7444
32 Ga0075430_100089390 3300006846 Bacteria 2577
33 Ga0075431_100226995 3300006847 Unclassified 1903
34 Ga0075429_100155837 3300006880 Bacteria 2000
35 Ga0099824_1012280 3300006942 Bacteria 9402
36 Ga0099826_10000415 3300006948 Bacteria 20185
37 Ga0105241_10037201 3300009174 Bacteria 3666
38 Ga0105237_10009276 3300009545 Bacteria 10546
39 Ga0105237_10170112 3300009545 Unclassified 2179
40 Ga0105249_10018183 3300009553 Bacteria 6248
41 Ga0105239_10010884 3300010375 Bacteria 10162
42 Ga0157370_10000106 3300013104 Bacteria 96408
43 Ga0157370_10028548 3300013104 Bacteria 5486
44 Ga0157369_10045699 3300013105 Bacteria 4761
45 Ga0157374_10114964 3300013296 Bacteria 2591
46 Ga0157372_10070459 3300013307 Bacteria 3934
47 Ga0163161_10000176 3300017792 Bacteria 58967
48 Ga0209258_100036 3300025242 Bacteria 428859
49 Ga0209148_1000230 3300025254 Bacteria 91940
50 Ga0209673_1000226 3300025273 Bacteria 111427
51 Ga0209676_1002016 3300025292 Bacteria 15977
52 Ga0209564_1000328 3300025295 Bacteria 92405
53 Ga0209564_1002364 3300025295 Bacteria 15176
54 Ga0209758_1000454 3300025297 Bacteria 68307
55 Ga0209758_1004918 3300025297 Bacteria 10742
56 Ga0209758_1040469 3300025297 Bacteria 1757
57 Ga0209050_1002395 3300025298 Bacteria 16245
58 Ga0207426_1000898 3300025302 Bacteria 30067
59 Ga0209257_1000025 3300025304 Bacteria 724838
60 Ga0209257_1007345 3300025304 Bacteria 6681
61 Ga0207655_1000008 3300025728 Bacteria 734289
62 Ga0207647_10008507 3300025904 Bacteria 7351
63 Ga0207671_10007100 3300025914 Bacteria 9791
64 Ga0207671_10043397 3300025914 Unclassified 3325
65 Ga0207660_10051617 3300025917 Bacteria 2924
66 Ga0207657_10012078 3300025919 Bacteria 8539
67 Ga0207649_10025266 3300025920 Bacteria 3461
68 Ga0207694_10050066 3300025924 Bacteria 3234
69 Ga0207664_10029232 3300025929 Bacteria 4196
70 Ga0207670_10043209 3300025936 Bacteria 2974
71 Ga0207691_10006920 3300025940 Bacteria 10937
72 Ga0207668_10019948 3300025972 Bacteria 4250
73 Ga0207639_10014252 3300026041 Bacteria 5584
74 Ga0207674_10142311 3300026116 Unclassified 2358
75 Ga0316176_1109501 3300030732 Bacteria 5442
76 Ga0307509_10000011 3300031507 Bacteria 298257
77 Ga0307408_100128895 3300031548 Bacteria 1971
78 Ga0307508_10001195 3300031616 Bacteria 29811
79 Ga0307516_10003031 3300031730 Bacteria 21910
80 Ga0307414_10001997 3300032004 Bacteria 10589
81 Ga0307414_10016248 3300032004 Bacteria 4520
82 Ga0307507_10042228 3300033179 Unclassified 4551
83 Ga0373937_0110502 3300036401 Bacteria 2556
84 Ga0451841_0360853 3300041498 Bacteria 2965
85 Ga0451853_0242413 3300041512 Bacteria 12803
86 Ga0453684_0094469 3300044712 Bacteria 3678
87 Ga0496102_0046215 3300048905 Bacteria 3953
88 Ga0496112_0224426 3300048915 Bacteria 1834
89 Ga0496113_0039811 3300048916 Bacteria 3461
90 Ga0496118_0023041 3300048921 Bacteria 5423
91 Ga0496118_0088419 3300048921 Bacteria 2143
92 Ga0496119_0088376 3300048922 Unclassified 1767
93 Ga0496121_0043363 3300048924 Bacteria 3897
94 Ga0501047_0015105 3300049581 Bacteria 7352
95 Ga0501070_0043531 3300049586 Bacteria 3736
96 Ga0501073_0083173 3300049589 Unclassified 2227
97 Ga0501044_0017527 3300049823 Bacteria 7685
98 Ga0501044_0074517 3300049823 Bacteria 3448
99 nmdc:mga00v17_44623_c1 3300050491 Unclassified 2674
100 nmdc:mga06z11_47247_c1 3300050494 Bacteria 2185
101 nmdc:mga07m45_69556_c1 3300050496 Unclassified 2001
102 nmdc:mga0qj67_54848_c1 3300050509 Bacteria 3156
103 nmdc:mga06r32_188053_c1 3300050510 Unclassified 2052
104 Ga0500644_0000071 3300053088 Bacteria 60641
105 Ga0500646_0003554 3300053090 Bacteria 3990
106 Ga0500566_0004416 3300053094 Bacteria 8397
107 Ga0500607_013171 3300053121 Unclassified 4835
108 Ga0500618_003213 3300053125 Bacteria 5694
109 Ga0500658_0000024 3300053134 Bacteria 117952
110 Ga0500658_0010948 3300053134 Unclassified 3344
111 Ga0500559_0013140 3300053136 Unclassified 3509
112 Ga0500568_0014616 3300053139 Bacteria 3539
113 Ga0500577_0000687 3300053142 Bacteria 8664
114 Ga0500603_001407 3300053150 Bacteria 5492
115 Ga0500616_0007949 3300053153 Bacteria 6661
116 Ga0500633_0000322 3300053160 Bacteria 7121
117 Ga0500584_018308 3300053726 Bacteria 3241
118 2520881973 2519899754 Bacteria 5336938
119 2522552848 2522125168 Bacteria 7376607
120 2738701360 2738541273 Bacteria 4048577
121 2738712283 2738541275 Bacteria 4830863
122 2738737023 2738541279 Bacteria 6149495
123 2738769563 2738541285 Bacteria 6150075
124 2738850708 2738541301 Bacteria 4834102
125 2738866437 2738541304 Bacteria 4833665
126 2739218605 2738543007 Bacteria 6149845
127 2739255658 2738543014 Bacteria 4048139
128 2739298955 2738543022 Bacteria 4835059
129 2739360633 2738543033 Bacteria 4833336
130 2817417338 2816332280 Bacteria 5109718
131 2819679214 2818991460 Bacteria 7595395
132 2857622967 2857618242 Bacteria 5635925
133 2903897928 2903895155 Bacteria 5258610
134 2904559333 2904555929 Bacteria 5218588
135 2919194959 2919191525 Bacteria 5765973
136 2928102798 2928100450 Bacteria 4837635
137 2928961851 2928959182 Bacteria 4725774
138 2929153285 2929150217 Bacteria 5462483
139 2929244403 2929239360 Bacteria 7745570
140 2958459155 2958458903 Bacteria 5301041
141 Ga0070699_100096939
142 JGI24739J22299_10001388
143 rootH2_10070503
144 rootL2_10011816
145 rootH1_10206393
146 Ga0055542_1003527
147 Ga0055526_1019617
148 Ga0055528_1000198
149 Ga0055530_10008957
150 Ga0055531_10000139
151 Ga0065165_1000182
152 Ga0065165_1001360
153 Ga0065165_1019984
154 Ga0070680_100009199
155 Ga0070682_100012424
156 Ga0070682_100035115
157 Ga0070689_100008535
158 Ga0070661_100025920
159 Ga0070659_100078009
160 Ga0070663_100133283
161 Ga0070681_10201987
162 Ga0070672_100001722
163 Ga0068855_100183061
164 Ga0068857_100212841
165 Ga0068854_100084956
166 Ga0068852_100012674
167 Ga0068852_100133691
168 Ga0075364_10001188
169 Ga0075370_10055539
170 Ga0075428_100017657
171 Ga0075428_100019810
172 Ga0075430_100089390
173 Ga0075431_100226995
174 Ga0075429_100155837
175 Ga0099824_1012280
176 Ga0099826_10000415
177 Ga0105241_10037201
178 Ga0105237_10009276
179 Ga0105237_10170112
180 Ga0105249_10018183
181 Ga0105239_10010884
182 Ga0157370_10000106
183 Ga0157370_10028548
184 Ga0157369_10045699
185 Ga0157374_10114964
186 Ga0157372_10070459
187 Ga0163161_10000176
188 Ga0209258_100036
189 Ga0209148_1000230
190 Ga0209673_1000226
191 Ga0209676_1002016
192 Ga0209564_1000328
193 Ga0209564_1002364
194 Ga0209758_1000454
195 Ga0209758_1004918
196 Ga0209758_1040469
197 Ga0209050_1002395
198 Ga0207426_1000898
199 Ga0209257_1000025
200 Ga0209257_1007345
201 Ga0207655_1000008
202 Ga0207647_10008507
203 Ga0207671_10007100
204 Ga0207671_10043397
205 Ga0207660_10051617
206 Ga0207657_10012078
207 Ga0207649_10025266
208 Ga0207694_10050066
209 Ga0207664_10029232
210 Ga0207670_10043209
211 Ga0207691_10006920
212 Ga0207668_10019948
213 Ga0207639_10014252
214 Ga0207674_10142311
215 Ga0316176_1109501
216 Ga0307509_10000011
217 Ga0307408_100128895
218 Ga0307508_10001195
219 Ga0307516_10003031
220 Ga0307414_10001997
221 Ga0307414_10016248
222 Ga0307507_10042228
223 Ga0373937_0110502
224 Ga0451841_0360853
225 Ga0451853_0242413
226 Ga0453684_0094469
227 Ga0496102_0046215
228 Ga0496112_0224426
229 Ga0496113_0039811
230 Ga0496118_0023041
231 Ga0496118_0088419
232 Ga0496119_0088376
233 Ga0496121_0043363
234 Ga0501047_0015105
235 Ga0501070_0043531
236 Ga0501073_0083173
237 Ga0501044_0017527
238 Ga0501044_0074517
239 nmdc:mga00v17_44623_c1
240 nmdc:mga06z11_47247_c1
241 nmdc:mga07m45_69556_c1
242 nmdc:mga0qj67_54848_c1
243 nmdc:mga06r32_188053_c1
244 Ga0500644_0000071
245 Ga0500646_0003554
246 Ga0500566_0004416
247 Ga0500607_013171
248 Ga0500618_003213
249 Ga0500658_0000024
250 Ga0500658_0010948
251 Ga0500559_0013140
252 Ga0500568_0014616
253 Ga0500577_0000687
254 Ga0500603_001407
255 Ga0500616_0007949
256 Ga0500633_0000322
257 Ga0500584_018308
258 2520881973
259 2522552848
260 2738701360
261 2738712283
262 2738737023
263 2738769563
264 2738850708
265 2738866437
266 2739218605
267 2739255658
268 2739298955
269 2739360633
270 2817417338
271 2819679214
272 2857622967
273 2903897928
274 2904559333
275 2919194959
276 2928102798
277 2928961851
278 2929153285
279 2929244403
280 2958459155

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

100

162

0.97

PF00155

Aminotran_1_2

Aminotransferase class I and II

199

556

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
6sbs-assembly1.cif.gz_A ytra from sulfolobus acidocaldarius, a gntr-family transcription factor 0.9785 9 86
2wv0-assembly5.cif.gz_I crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.9569 10 83
7pq9-assembly7.cif.gz_KKK crystal structure of bacillus clausii pdxr at 2.8 angstroms resolution 0.9522 7 85
2wv0-assembly3.cif.gz_E crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.9448 11 83
2wv0-assembly6.cif.gz_J-3 crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.9446 11 83
ID Description Score Start End Superfamily
af_Q2G1P1_1_44_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9882 41 82 1.10.10.10
4hamA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9706 7 83 1.10.10.10
2wv0I01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9584 19 85 1.10.10.10
af_P0ACM5_16_95_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9572 11 86 1.10.10.10
2wv0D01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9537 19 85 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7X8C4W4-F1-model_v4 GntR family transcriptional regulator 0.9916 8 85 GO:0003677
GO:0003700
AF-A0A1V2MBT4-F1-model_v4 HTH gntR-type domain-containing protein 0.9877 8 84 GO:0003677
GO:0003700
AF-A0A449TWV5-F1-model_v4 deleted 0.9847 8 83
AF-B6GDW1-F1-model_v4 Transcriptional regulator, GntR family 0.9818 8 85 GO:0003677
GO:0003700
AF-A0A291E0I5-F1-model_v4 GntR family transcriptional regulator (HTH-type transcriptional repressor yvoA) 0.9801 9 83 GO:0003677
GO:0003700
GO:0045892

Map