F178161

General Info

Members Datasets Scaffolds Average Seq Length
140 100 280 150

Family's Representative Sequence

Representative Sequence 3300003308|Ga0006777J48905_1055548|Ga0006777J48905_10555481
Length 171
Sequence MDAEMKLANDAWEALFRAQATLAREFEFEGDWGGLPTREYGVLYALSGARDGVRITDLMSDALLTQAGVSRLVARLEKRGLVARRDDPSDARACRIVLTPEGNDVQRRVGRMHARHVTTAMTRALGRAEQETLRDLGRALIAACPTPEGLAPNTTRGTAGPTPQETRRANQ

Samples

Sample ID Description Type Environment
1 3300003308 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
33 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
42 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
43 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
44 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
45 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
46 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
47 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
48 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
49 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
50 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
51 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
52 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
53 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
54 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
55 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
56 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
57 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
58 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
59 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
60 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
61 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
62 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
63 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
64 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
65 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
66 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
67 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
68 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
69 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
70 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
71 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
72 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
73 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
74 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
77 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
80 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
86 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
91 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
92 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
93 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
94 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
95 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
96 2643221629 Devosia sp. Root105 Isolate Unclassified
97 2643221662 Devosia sp. Root413D1 Isolate Unclassified
98 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
99 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
100 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95
Metatranscriptomes 0.71
Isolates 4.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10
Nodule 0.71
Rhizoplane 10
Rhizosphere 72.14
Stem 0
Stem Tuber 0
Unclassified 5.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006777J48905_1055548 3300003308 Bacteria 989
2 rootH1_10222033 3300003323 Bacteria 1331
3 Ga0070683_100418090 3300005329 Bacteria 1279
4 Ga0070683_101200980 3300005329 Bacteria 729
5 Ga0068868_101159786 3300005338 Unclassified 713
6 Ga0070714_100126779 3300005435 Bacteria 2277
7 Ga0070713_100313918 3300005436 Bacteria 1446
8 Ga0070713_101021686 3300005436 Bacteria 798
9 Ga0070711_100672452 3300005439 Bacteria 870
10 Ga0070711_101847817 3300005439 Unclassified 530
11 Ga0070694_100193756 3300005444 Bacteria 1511
12 Ga0070706_101008288 3300005467 Bacteria 768
13 Ga0070698_100086300 3300005471 Bacteria 3124
14 Ga0070684_100985538 3300005535 Bacteria 791
15 Ga0070697_100640028 3300005536 Bacteria 936
16 Ga0070665_101449544 3300005548 Bacteria 695
17 Ga0068855_101007200 3300005563 Bacteria 875
18 Ga0070664_100363649 3300005564 Bacteria 1318
19 Ga0081455_10003710 3300005937 Bacteria 17486
20 Ga0075365_10037810 3300006038 Bacteria 3134
21 Ga0075365_10074254 3300006038 Bacteria 2293
22 Ga0075365_10266747 3300006038 Bacteria 1204
23 Ga0075365_10829252 3300006038 Bacteria 652
24 Ga0075364_10016377 3300006051 Bacteria 4612
25 Ga0075364_10056571 3300006051 Bacteria 2568
26 Ga0075432_10176966 3300006058 Bacteria 833
27 Ga0070716_100440807 3300006173 Bacteria 947
28 Ga0068871_101231963 3300006358 Bacteria 702
29 Ga0075428_100851588 3300006844 Bacteria 968
30 Ga0075428_101497545 3300006844 Bacteria 707
31 Ga0075430_100747736 3300006846 Bacteria 806
32 Ga0075433_11457208 3300006852 Bacteria 592
33 Ga0075429_100559952 3300006880 Bacteria 1002
34 Ga0111539_10027595 3300009094 Bacteria 6934
35 Ga0111539_10147627 3300009094 Bacteria 2753
36 Ga0111539_10183607 3300009094 Bacteria 2443
37 Ga0111539_11072981 3300009094 Bacteria 936
38 Ga0105245_10498275 3300009098 Bacteria 1234
39 Ga0114129_10200971 3300009147 Bacteria 2699
40 Ga0114129_11692489 3300009147 Bacteria 772
41 Ga0114129_12544584 3300009147 Bacteria 611
42 Ga0105242_11366039 3300009176 Bacteria 734
43 Ga0157374_10091665 3300013296 Bacteria 2898
44 Ga0157376_12300085 3300014969 Bacteria 578
45 Ga0207426_1136342 3300025302 Unclassified 588
46 Ga0207663_11393875 3300025916 Bacteria 564
47 Ga0207687_10354202 3300025927 Bacteria 1196
48 Ga0207700_10300236 3300025928 Bacteria 1387
49 Ga0207700_11663334 3300025928 Bacteria 564
50 Ga0207664_10081145 3300025929 Bacteria 2638
51 Ga0207664_10233247 3300025929 Bacteria 1600
52 Ga0207704_10816222 3300025938 Bacteria 780
53 Ga0207661_10241300 3300025944 Bacteria 1604
54 Ga0207661_10301023 3300025944 Bacteria 1438
55 Ga0207679_10345700 3300025945 Bacteria 1295
56 Ga0207641_10406771 3300026088 Bacteria 1308
57 Ga0207428_10083958 3300027907 Bacteria 2483
58 Ga0265318_10007174 3300028577 Bacteria 5066
59 Ga0307515_10619747 3300028794 Bacteria 693
60 Ga0307513_10001484 3300031456 Bacteria 33699
61 Ga0307413_10607625 3300031824 Bacteria 896
62 Ga0307406_10504992 3300031901 Bacteria 981
63 Ga0307406_10845012 3300031901 Bacteria 776
64 Ga0307407_10342661 3300031903 Bacteria 1056
65 Ga0307411_11825932 3300032005 Bacteria 565
66 Ga0373925_1740383 3300037068 Bacteria 509
67 Ga0395900_0178118 3300037418 Bacteria 2162
68 Ga0395900_0331195 3300037418 Bacteria 1501
69 Ga0395900_1013276 3300037418 Bacteria 750
70 Ga0395900_1038937 3300037418 Bacteria 738
71 Ga0395898_0002160 3300037466 Bacteria 24134
72 Ga0395898_0065660 3300037466 Bacteria 3518
73 Ga0395898_1032214 3300037466 Bacteria 757
74 Ga0395905_0320878 3300037471 Bacteria 1439
75 Ga0395901_0125337 3300038443 Bacteria 2699
76 Ga0395901_0545938 3300038443 Bacteria 1175
77 Ga0439465_0049779 3300041413 Bacteria 1370
78 Ga0439465_0145955 3300041413 Bacteria 843
79 Ga0439465_0279136 3300041413 Bacteria 622
80 Ga0451791_0477284 3300041451 Unclassified 711
81 Ga0451853_1735308 3300041512 Bacteria 747
82 Ga0466971_0008864 3300044719 Bacteria 4394
83 Ga0466958_0106328 3300045836 Bacteria 1749
84 Ga0495627_033548 3300046453 Bacteria 1609
85 Ga0495603_0214924 3300046455 Bacteria 1110
86 Ga0495583_0142557 3300046506 Bacteria 997
87 Ga0495620_0228431 3300046515 Bacteria 711
88 Ga0495611_0000360 3300046648 Bacteria 29664
89 Ga0495611_0019080 3300046648 Bacteria 2945
90 Ga0495613_0006554 3300046689 Bacteria 8700
91 Ga0495624_0564072 3300046690 Bacteria 680
92 Ga0495676_0347437 3300047321 Bacteria 992
93 Ga0495683_0073280 3300047323 Bacteria 1679
94 Ga0495687_015508 3300047443 Bacteria 3871
95 Ga0496100_0045788 3300048903 Bacteria 2809
96 Ga0496101_0034306 3300048904 Bacteria 3583
97 Ga0496102_0158759 3300048905 Bacteria 2127
98 Ga0496102_0549310 3300048905 Bacteria 1078
99 Ga0496105_1263386 3300048908 Unclassified 541
100 Ga0496106_0098599 3300048909 Bacteria 2264
101 Ga0496107_0099580 3300048910 Bacteria 2130
102 Ga0496108_1459366 3300048911 Unclassified 570
103 Ga0496111_0202129 3300048914 Bacteria 1477
104 Ga0496112_0424147 3300048915 Bacteria 1269
105 Ga0496112_1287210 3300048915 Bacteria 647
106 Ga0496115_0252307 3300048918 Bacteria 1452
107 Ga0496115_0487198 3300048918 Bacteria 992
108 Ga0496124_0282185 3300048927 Bacteria 1210
109 Ga0496126_0205279 3300048929 Bacteria 1661
110 Ga0496126_0564670 3300048929 Bacteria 901
111 Ga0501033_0000299 3300049570 Bacteria 47420
112 Ga0501039_0438087 3300049575 Bacteria 1026
113 Ga0501047_0961480 3300049581 Bacteria 667
114 Ga0501044_0138629 3300049823 Bacteria 2422
115 nmdc:mga0yw44_15155_c1 3300050492 Bacteria 4120
116 nmdc:mga0yw44_234112_c1 3300050492 Bacteria 1219
117 nmdc:mga05p37_123018_c1 3300050507 Bacteria 3187
118 nmdc:mga05p37_427592_c1 3300050507 Bacteria 1539
119 nmdc:mga0qj67_1042183_c1 3300050509 Bacteria 640
120 nmdc:mga0qj67_544816_c1 3300050509 Bacteria 931
121 nmdc:mga0qj67_674639_c1 3300050509 Bacteria 823
122 nmdc:mga06r32_733209_c1 3300050510 Bacteria 952
123 nmdc:mga08y16_178130_c1 3300050511 Bacteria 2208
124 nmdc:mga08y16_497741_c1 3300050511 Bacteria 1239
125 nmdc:mga0a205_533414_c1 3300050515 Bacteria 1029
126 nmdc:mga0a205_635443_c1 3300050515 Bacteria 919
127 nmdc:mga0a205_962745_c1 3300050515 Unclassified 700
128 Ga0495619_0780777 3300053085 Unclassified 647
129 Ga0500568_0025115 3300053139 Bacteria 2518
130 Ga0500568_0034779 3300053139 Bacteria 2060
131 Ga0500568_0164742 3300053139 Bacteria 817
132 Ga0500634_0000002 3300053161 Bacteria 252372
133 Ga0500634_0067207 3300053161 Bacteria 1886
134 Ga0466962_0009790 3300061719 Bacteria 4599
135 2616693570 2616644814 Bacteria 11555299
136 2644168247 2643221629 Bacteria 5850260
137 2644348939 2643221662 Bacteria 5851492
138 8033687376 8033684223 Bacteria 6906479
139 8054112058 8054107350 Bacteria 5022511
140 8054613491 8054609563 Bacteria 5170090
141 Ga0006777J48905_1055548
142 rootH1_10222033
143 Ga0070683_100418090
144 Ga0070683_101200980
145 Ga0068868_101159786
146 Ga0070714_100126779
147 Ga0070713_100313918
148 Ga0070713_101021686
149 Ga0070711_100672452
150 Ga0070711_101847817
151 Ga0070694_100193756
152 Ga0070706_101008288
153 Ga0070698_100086300
154 Ga0070684_100985538
155 Ga0070697_100640028
156 Ga0070665_101449544
157 Ga0068855_101007200
158 Ga0070664_100363649
159 Ga0081455_10003710
160 Ga0075365_10037810
161 Ga0075365_10074254
162 Ga0075365_10266747
163 Ga0075365_10829252
164 Ga0075364_10016377
165 Ga0075364_10056571
166 Ga0075432_10176966
167 Ga0070716_100440807
168 Ga0068871_101231963
169 Ga0075428_100851588
170 Ga0075428_101497545
171 Ga0075430_100747736
172 Ga0075433_11457208
173 Ga0075429_100559952
174 Ga0111539_10027595
175 Ga0111539_10147627
176 Ga0111539_10183607
177 Ga0111539_11072981
178 Ga0105245_10498275
179 Ga0114129_10200971
180 Ga0114129_11692489
181 Ga0114129_12544584
182 Ga0105242_11366039
183 Ga0157374_10091665
184 Ga0157376_12300085
185 Ga0207426_1136342
186 Ga0207663_11393875
187 Ga0207687_10354202
188 Ga0207700_10300236
189 Ga0207700_11663334
190 Ga0207664_10081145
191 Ga0207664_10233247
192 Ga0207704_10816222
193 Ga0207661_10241300
194 Ga0207661_10301023
195 Ga0207679_10345700
196 Ga0207641_10406771
197 Ga0207428_10083958
198 Ga0265318_10007174
199 Ga0307515_10619747
200 Ga0307513_10001484
201 Ga0307413_10607625
202 Ga0307406_10504992
203 Ga0307406_10845012
204 Ga0307407_10342661
205 Ga0307411_11825932
206 Ga0373925_1740383
207 Ga0395900_0178118
208 Ga0395900_0331195
209 Ga0395900_1013276
210 Ga0395900_1038937
211 Ga0395898_0002160
212 Ga0395898_0065660
213 Ga0395898_1032214
214 Ga0395905_0320878
215 Ga0395901_0125337
216 Ga0395901_0545938
217 Ga0439465_0049779
218 Ga0439465_0145955
219 Ga0439465_0279136
220 Ga0451791_0477284
221 Ga0451853_1735308
222 Ga0466971_0008864
223 Ga0466958_0106328
224 Ga0495627_033548
225 Ga0495603_0214924
226 Ga0495583_0142557
227 Ga0495620_0228431
228 Ga0495611_0000360
229 Ga0495611_0019080
230 Ga0495613_0006554
231 Ga0495624_0564072
232 Ga0495676_0347437
233 Ga0495683_0073280
234 Ga0495687_015508
235 Ga0496100_0045788
236 Ga0496101_0034306
237 Ga0496102_0158759
238 Ga0496102_0549310
239 Ga0496105_1263386
240 Ga0496106_0098599
241 Ga0496107_0099580
242 Ga0496108_1459366
243 Ga0496111_0202129
244 Ga0496112_0424147
245 Ga0496112_1287210
246 Ga0496115_0252307
247 Ga0496115_0487198
248 Ga0496124_0282185
249 Ga0496126_0205279
250 Ga0496126_0564670
251 Ga0501033_0000299
252 Ga0501039_0438087
253 Ga0501047_0961480
254 Ga0501044_0138629
255 nmdc:mga0yw44_15155_c1
256 nmdc:mga0yw44_234112_c1
257 nmdc:mga05p37_123018_c1
258 nmdc:mga05p37_427592_c1
259 nmdc:mga0qj67_1042183_c1
260 nmdc:mga0qj67_544816_c1
261 nmdc:mga0qj67_674639_c1
262 nmdc:mga06r32_733209_c1
263 nmdc:mga08y16_178130_c1
264 nmdc:mga08y16_497741_c1
265 nmdc:mga0a205_533414_c1
266 nmdc:mga0a205_635443_c1
267 nmdc:mga0a205_962745_c1
268 Ga0495619_0780777
269 Ga0500568_0025115
270 Ga0500568_0034779
271 Ga0500568_0164742
272 Ga0500634_0000002
273 Ga0500634_0067207
274 Ga0466962_0009790
275 2616693570
276 2644168247
277 2644348939
278 8033687376
279 8054112058
280 8054613491

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12802

MarR_2

MarR family

33

93

0.98

PF13463

HTH_27

Winged helix DNA-binding domain

35

102

0.93

PF01047

MarR

MarR family

36

94

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7krh-assembly1.cif.gz_A-2 crystal structure of the marr family transcriptional regulator from variovorax paradoxus with s28a and r46a mutations 0.8567 14 142
7kfq-assembly1.cif.gz_A crystal structure of the marr family transcriptional regulator from variovorax paradoxus bound to 1h-indole-3-carboxylic acid 0.8556 14 142
7kfo-assembly1.cif.gz_A-2 crystal structure of the marr family transcriptional regulator from variovorax paradoxus bound to indole 3 acetic acid 0.8535 14 142
2wte-assembly1.cif.gz_B the structure of the crispr-associated protein, csa3, from sulfolobus solfataricus at 1.8 angstrom resolution. 0.8517 35 107
7kk0-assembly1.cif.gz_A crystal structure of the marr family transcriptional regulator from variovorax paradoxus bound to catechol 0.8471 14 142
ID Description Score Start End Superfamily
af_Q9LSZ5_19_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9368 39 99 1.10.10.10
af_I1L271_42_109_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9098 38 99 1.10.10.10
af_Q58793_322_389_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8924 37 98 1.10.10.10
af_B4FTK6_47_112_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8822 36 99 1.10.10.10
af_Q9LSZ5_19_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8699 39 99 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A660LG83-F1-model_v4 DNA-binding MarR family transcriptional regulator 0.9645 5 142 GO:0003677
GO:0003700
GO:0006950
AF-A0A1G8FNN0-F1-model_v4 DNA-binding transcriptional regulator, MarR family 0.9606 1 142 GO:0003677
GO:0003700
GO:0006950
AF-A0A7J5BHK7-F1-model_v4 MarR family transcriptional regulator 0.9602 3 142 GO:0003677
GO:0003700
GO:0006950
AF-A0A853F0K7-F1-model_v4 Winged helix-turn-helix transcriptional regulator 0.9503 6 143 GO:0003677
GO:0003700
GO:0006950
AF-A0A538MNA1-F1-model_v4 MarR family transcriptional regulator 0.9474 3 145 GO:0003677
GO:0003700
GO:0006950

Map