F177721

General Info

Members Datasets Scaffolds Average Seq Length
139 98 139 388

Family's Representative Sequence

Representative Sequence 3300049822|Ga0501035_0096065|Ga0501035_0096065_39_1397
Length 452
Sequence LALFTKYKAFFNTLPAAHPKTRIPAGDPLIRLFRSSSASPRDFHATPGGPARSRHFCYNSRPMATLTYRTAGESHGPALIALIEGMPHGCPVDTEVINRELLRRQGGYGRGGRQKIETDKVQYLAGIRMNQTIGSPIALMVPNKDNRLDDPAATPPLHRPRPGHADLAGAVKWLTDDCREVLERASARETTVRVAAGALTRSLLREFGIDVFGFVRQVGDATADFLVTPENWRELLEKRDASEVYCPDAAADAAMKDFINRQKVAKDTAGGIVEAHVFGCPVGLGSCLTWDGRLDSRIAAAVVGIQAFKGVEIGLGFEVARRPGSQVHDEIGYDPALANTPSLGFVRRTNNAGGLEGGMTNGQPLVVRGAMKPISTLGKPLRSIDLRTRESSEAGWERSDISAISAASVVMENVIAFEVARALVEKFGGDSLAEMRQNYDNYLGAARQVGRS

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
14 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
37 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
38 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
39 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
40 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
41 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
42 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
43 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
44 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
45 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
46 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
47 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
48 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
49 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
50 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
51 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
52 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
53 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
54 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
55 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
56 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
57 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
58 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
59 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
60 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
61 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
62 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
63 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
64 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
65 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
66 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
67 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
68 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
69 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
70 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
71 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
72 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
73 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
74 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
75 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
76 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
88 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
89 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
90 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
91 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
92 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
96 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
97 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
98 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.44
Nodule 0
Rhizoplane 7.91
Rhizosphere 90.65
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10071921 3300005290 Bacteria 4993
2 Ga0065707_10085649 3300005295 Bacteria 5994
3 Ga0070658_10010845 3300005327 Bacteria 7306
4 Ga0070675_100176747 3300005354 Bacteria 1844
5 Ga0070667_100007702 3300005367 Bacteria 8930
6 Ga0070714_100050852 3300005435 Bacteria 3532
7 Ga0070714_100065304 3300005435 Bacteria 3134
8 Ga0070714_100075978 3300005435 Bacteria 2915
9 Ga0070710_10027923 3300005437 Bacteria 3014
10 Ga0070694_100002367 3300005444 Bacteria 11140
11 Ga0070695_100011391 3300005545 Bacteria 5320
12 Ga0070665_100000050 3300005548 Bacteria 250991
13 Ga0070665_100000550 3300005548 Bacteria 52403
14 Ga0070665_100018555 3300005548 Bacteria 6972
15 Ga0068855_100006502 3300005563 Bacteria 14210
16 Ga0068855_100097648 3300005563 Bacteria 3384
17 Ga0068855_100102746 3300005563 Bacteria 3289
18 Ga0068859_100171428 3300005617 Bacteria 2251
19 Ga0068862_100145773 3300005844 Bacteria 2104
20 Ga0081540_1070923 3300005983 Bacteria 1612
21 Ga0070717_10038787 3300006028 Bacteria 3873
22 Ga0075368_10078367 3300006042 Bacteria 1342
23 Ga0070712_100060978 3300006175 Bacteria 2663
24 Ga0075370_10048890 3300006353 Bacteria 2397
25 Ga0075428_100014595 3300006844 Bacteria 8727
26 Ga0075428_100033344 3300006844 Bacteria 5686
27 Ga0097620_100171422 3300006931 Bacteria 2251
28 Ga0105240_10055742 3300009093 Bacteria 4948
29 Ga0114129_10117477 3300009147 Bacteria 3665
30 Ga0105238_10106114 3300009551 Bacteria 2790
31 Ga0157370_10051376 3300013104 Bacteria 3937
32 Ga0157370_10158036 3300013104 Bacteria 2109
33 Ga0157369_10047535 3300013105 Bacteria 4658
34 Ga0157372_10218435 3300013307 Bacteria 2209
35 Ga0207685_10002803 3300025905 Bacteria 4086
36 Ga0207705_10041038 3300025909 Bacteria 3319
37 Ga0207684_10039813 3300025910 Bacteria 3984
38 Ga0207695_10000310 3300025913 Bacteria 118062
39 Ga0207664_10161780 3300025929 Bacteria 1910
40 Ga0207667_10006147 3300025949 Bacteria 14587
41 Ga0207667_10147690 3300025949 Bacteria 2420
42 Ga0207658_10007576 3300025986 Bacteria 7396
43 Ga0268266_10000183 3300028379 Bacteria 111164
44 Ga0268266_10000253 3300028379 Bacteria 90293
45 Ga0268266_10001100 3300028379 Bacteria 33872
46 Ga0265338_10011973 3300028800 Bacteria 9937
47 Ga0265325_10002037 3300031241 Bacteria 13901
48 Ga0265339_10000778 3300031249 Bacteria 24660
49 Ga0265331_10000444 3300031250 Bacteria 40769
50 Ga0265316_10216273 3300031344 Bacteria 1416
51 Ga0265313_10000050 3300031595 Bacteria 111425
52 Ga0265314_10000438 3300031711 Bacteria 55668
53 Ga0265342_10031229 3300031712 Bacteria 3294
54 Ga0307410_10032628 3300031852 Bacteria 3354
55 Ga0373937_0109953 3300036401 Bacteria 2563
56 Ga0316584_0024440 3300036712 Bacteria 4422
57 Ga0395900_0158755 3300037418 Bacteria 2308
58 Ga0395901_0197209 3300038443 Bacteria 2111
59 Ga0451577_0000141 3300042876 Bacteria 161372
60 Ga0453683_0000167 3300044673 Bacteria 91120
61 Ga0466966_0030922 3300044684 Bacteria 3473
62 Ga0453684_0000463 3300044712 Bacteria 161665
63 Ga0451576_0000327 3300045051 Bacteria 115197
64 Ga0495653_0000352 3300046463 Bacteria 37376
65 Ga0495580_0028542 3300046472 Unclassified 4056
66 Ga0495608_0066344 3300046511 Bacteria 2363
67 Ga0495618_0000547 3300046514 Bacteria 26675
68 Ga0495618_0146694 3300046514 Bacteria 1508
69 Ga0495630_0000072 3300046517 Bacteria 79669
70 Ga0495652_0146315 3300046529 Bacteria 1852
71 Ga0495645_0000034 3300046543 Bacteria 102615
72 Ga0495657_0000093 3300046675 Bacteria 78860
73 Ga0495624_0002950 3300046690 Bacteria 12725
74 Ga0495581_0009790 3300047315 Bacteria 5547
75 Ga0495674_0018484 3300047319 Bacteria 6487
76 Ga0495684_0007289 3300047471 Bacteria 8570
77 Ga0495686_0011823 3300047472 Bacteria 6139
78 Ga0495602_0049179 3300048088 Bacteria 3780
79 Ga0496101_0011688 3300048904 Bacteria 5833
80 Ga0496103_0195985 3300048906 Bacteria 1299
81 Ga0496104_0000037 3300048907 Bacteria 178518
82 Ga0496104_0069461 3300048907 Bacteria 3348
83 Ga0496105_0040364 3300048908 Bacteria 3848
84 Ga0496108_0178747 3300048911 Bacteria 1837
85 Ga0496109_0026790 3300048912 Bacteria 5141
86 Ga0496110_0001433 3300048913 Bacteria 17249
87 Ga0496111_0000477 3300048914 Bacteria 20473
88 Ga0496111_0004295 3300048914 Bacteria 8982
89 Ga0496115_0048837 3300048918 Bacteria 3386
90 Ga0501032_0066436 3300049569 Bacteria 2410
91 Ga0501033_0039605 3300049570 Bacteria 3520
92 Ga0501033_0040985 3300049570 Bacteria 3456
93 Ga0501034_0000416 3300049571 Bacteria 71648
94 Ga0501034_0002113 3300049571 Bacteria 24747
95 Ga0501034_0003832 3300049571 Bacteria 16947
96 Ga0501034_0004021 3300049571 Bacteria 16496
97 Ga0501034_0023357 3300049571 Bacteria 6301
98 Ga0501034_0092454 3300049571 Bacteria 3022
99 Ga0501034_0118171 3300049571 Bacteria 2639
100 Ga0501034_0118205 3300049571 Bacteria 2638
101 Ga0501034_0451719 3300049571 Bacteria 1203
102 Ga0501036_0152838 3300049572 Bacteria 1947
103 Ga0501037_0001148 3300049573 Bacteria 19589
104 Ga0501038_0002920 3300049574 Bacteria 15933
105 Ga0501040_0019568 3300049576 Bacteria 4505
106 Ga0501043_0007792 3300049579 Bacteria 8463
107 Ga0501043_0022540 3300049579 Bacteria 4938
108 Ga0501043_0186595 3300049579 Bacteria 1614
109 Ga0501046_0000054 3300049580 Bacteria 131318
110 Ga0501046_0014770 3300049580 Bacteria 6574
111 Ga0501047_0027596 3300049581 Bacteria 5469
112 Ga0501047_0042308 3300049581 Bacteria 4403
113 Ga0501047_0117886 3300049581 Bacteria 2536
114 Ga0501047_0269670 3300049581 Bacteria 1548
115 Ga0501047_0284877 3300049581 Bacteria 1496
116 Ga0501048_0001910 3300049582 Bacteria 15808
117 Ga0501048_0082348 3300049582 Bacteria 2270
118 Ga0501070_0000939 3300049586 Bacteria 26318
119 Ga0501070_0021218 3300049586 Bacteria 5452
120 Ga0501070_0089151 3300049586 Bacteria 2553
121 Ga0501072_0068837 3300049588 Bacteria 2794
122 Ga0501076_0035499 3300049592 Bacteria 3901
123 Ga0501076_0046044 3300049592 Bacteria 3446
124 Ga0501076_0184683 3300049592 Bacteria 1700
125 Ga0501080_0088305 3300049742 Bacteria 2880
126 Ga0501080_0198989 3300049742 Bacteria 1840
127 Ga0501083_0000089 3300049744 Bacteria 62399
128 Ga0501083_0099663 3300049744 Unclassified 1916
129 Ga0501035_0096065 3300049822 Bacteria 2604
130 Ga0501044_0001451 3300049823 Bacteria 27864
131 Ga0501044_0022267 3300049823 Bacteria 6754
132 Ga0501044_0123074 3300049823 Bacteria 2593
133 Ga0501044_0440129 3300049823 Bacteria 1211
134 Ga0501045_0033937 3300049824 Bacteria 3703
135 nmdc:mga05p37_8247_c1 3300050507 Bacteria 12318
136 Ga0495612_0000070 3300053078 Bacteria 46901
137 Ga0501082_0113142 3300060353 Bacteria 2350
138 Ga0501082_0134778 3300060353 Bacteria 2143
139 Ga0530510_0031962 3300061734 Bacteria 3784

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049592 Ga0501076_0184683 Ga0501076_0184683_13_1023 323
2 3300047472 Ga0495686_0011823 Ga0495686_0011823_14_1060 324
3 3300048906 Ga0496103_0195985 Ga0496103_0195985_31_1119 340
4 3300049581 Ga0501047_0269670 Ga0501047_0269670_278_1384 340
5 3300036712 Ga0316584_0024440 Ga0316584_0024440_197_1363 357
6 3300049571 Ga0501034_0000416 Ga0501034_0000416_63146_64249 358
7 3300049586 Ga0501070_0021218 Ga0501070_0021218_1289_2449 358
8 3300049592 Ga0501076_0046044 Ga0501076_0046044_218_1381 358
9 3300005844 Ga0068862_100145773 Ga0068862_1001457732 365
10 3300046529 Ga0495652_0146315 Ga0495652_0146315_554_1675 365
11 3300005983 Ga0081540_1070923 Ga0081540_10709232 367
12 3300042876 Ga0451577_0000141 Ga0451577_0000141_85118_86266 370
13 3300044673 Ga0453683_0000167 Ga0453683_0000167_66066_67214 370
14 3300044712 Ga0453684_0000463 Ga0453684_0000463_75412_76560 370
15 3300005563 Ga0068855_100006502 Ga0068855_10000650213 371
16 3300025949 Ga0207667_10006147 Ga0207667_1000614713 371
17 3300006175 Ga0070712_100060978 Ga0070712_1000609783 373
18 3300025905 Ga0207685_10002803 Ga0207685_100028032 373
19 3300044684 Ga0466966_0030922 Ga0466966_0030922_731_1894 373
20 3300048904 Ga0496101_0011688 Ga0496101_0011688_3182_4369 373
21 3300048907 Ga0496104_0069461 Ga0496104_0069461_1769_2956 373
22 3300048908 Ga0496105_0040364 Ga0496105_0040364_1017_2204 373
23 3300048911 Ga0496108_0178747 Ga0496108_0178747_127_1314 373
24 3300048912 Ga0496109_0026790 Ga0496109_0026790_1909_3096 373
25 3300048914 Ga0496111_0004295 Ga0496111_0004295_1335_2522 373
26 3300048918 Ga0496115_0048837 Ga0496115_0048837_1797_2984 373
27 3300049572 Ga0501036_0152838 Ga0501036_0152838_460_1620 373
28 3300049576 Ga0501040_0019568 Ga0501040_0019568_1619_2779 373
29 3300049581 Ga0501047_0284877 Ga0501047_0284877_76_1236 373
30 3300049588 Ga0501072_0068837 Ga0501072_0068837_785_1945 373
31 3300049742 Ga0501080_0198989 Ga0501080_0198989_638_1798 373
32 3300061734 Ga0530510_0031962 Ga0530510_0031962_1318_2478 373
33 3300005444 Ga0070694_100002367 Ga0070694_1000023675 374
34 3300005545 Ga0070695_100011391 Ga0070695_1000113916 374
35 3300025910 Ga0207684_10039813 Ga0207684_100398133 374
36 3300046511 Ga0495608_0066344 Ga0495608_0066344_192_1361 374
37 3300046543 Ga0495645_0000034 Ga0495645_0000034_26144_27313 374
38 3300048907 Ga0496104_0000037 Ga0496104_0000037_165702_166874 374
39 3300048913 Ga0496110_0001433 Ga0496110_0001433_4793_5965 374
40 3300048914 Ga0496111_0000477 Ga0496111_0000477_7790_8962 374
41 3300050507 nmdc:mga05p37_8247_c1 nmdc:mga05p37_8247_c1_1660_2829 374
42 3300046463 Ga0495653_0000352 Ga0495653_0000352_10136_11308 375
43 3300046514 Ga0495618_0000547 Ga0495618_0000547_1401_2573 375
44 3300046517 Ga0495630_0000072 Ga0495630_0000072_49609_50778 375
45 3300046675 Ga0495657_0000093 Ga0495657_0000093_50827_51996 375
46 3300053078 Ga0495612_0000070 Ga0495612_0000070_21406_22578 375
47 3300009093 Ga0105240_10055742 Ga0105240_100557423 377
48 3300009551 Ga0105238_10106114 Ga0105238_101061141 377
49 3300046472 Ga0495580_0028542 Ga0495580_0028542_2289_3461 377
50 3300046514 Ga0495618_0146694 Ga0495618_0146694_290_1462 377
51 3300046690 Ga0495624_0002950 Ga0495624_0002950_8822_9994 377
52 3300047315 Ga0495581_0009790 Ga0495581_0009790_2433_3605 377
53 3300047319 Ga0495674_0018484 Ga0495674_0018484_3429_4601 377
54 3300047471 Ga0495684_0007289 Ga0495684_0007289_2051_3223 377
55 3300049586 Ga0501070_0089151 Ga0501070_0089151_199_1344 377
56 3300005548 Ga0070665_100000550 Ga0070665_1000005508 379
57 3300005563 Ga0068855_100097648 Ga0068855_1000976482 379
58 3300006042 Ga0075368_10078367 Ga0075368_100783672 379
59 3300006353 Ga0075370_10048890 Ga0075370_100488902 379
60 3300025949 Ga0207667_10147690 Ga0207667_101476902 379
61 3300028379 Ga0268266_10000253 Ga0268266_1000025315 379
62 3300028800 Ga0265338_10011973 Ga0265338_100119735 379
63 3300031241 Ga0265325_10002037 Ga0265325_100020373 379
64 3300031249 Ga0265339_10000778 Ga0265339_100007787 379
65 3300031250 Ga0265331_10000444 Ga0265331_1000044428 379
66 3300031595 Ga0265313_10000050 Ga0265313_1000005075 379
67 3300031711 Ga0265314_10000438 Ga0265314_1000043834 379
68 3300031712 Ga0265342_10031229 Ga0265342_100312294 379
69 3300048088 Ga0495602_0049179 Ga0495602_0049179_1425_2576 379
70 3300049570 Ga0501033_0040985 Ga0501033_0040985_665_1804 379
71 3300049571 Ga0501034_0003832 Ga0501034_0003832_6672_7811 379
72 3300049571 Ga0501034_0023357 Ga0501034_0023357_4453_5592 379
73 3300049571 Ga0501034_0092454 Ga0501034_0092454_597_1736 379
74 3300049571 Ga0501034_0118171 Ga0501034_0118171_133_1272 379
75 3300049571 Ga0501034_0118205 Ga0501034_0118205_125_1267 379
76 3300049571 Ga0501034_0451719 Ga0501034_0451719_16_1155 379
77 3300049579 Ga0501043_0022540 Ga0501043_0022540_3081_4220 379
78 3300049580 Ga0501046_0014770 Ga0501046_0014770_720_1859 379
79 3300049581 Ga0501047_0117886 Ga0501047_0117886_1355_2494 379
80 3300049582 Ga0501048_0082348 Ga0501048_0082348_436_1575 379
81 3300049586 Ga0501070_0000939 Ga0501070_0000939_1324_2463 379
82 3300049592 Ga0501076_0035499 Ga0501076_0035499_2700_3839 379
83 3300005290 Ga0065712_10071921 Ga0065712_100719213 380
84 3300005295 Ga0065707_10085649 Ga0065707_100856492 380
85 3300005327 Ga0070658_10010845 Ga0070658_100108453 380
86 3300005354 Ga0070675_100176747 Ga0070675_1001767472 380
87 3300005367 Ga0070667_100007702 Ga0070667_10000770210 380
88 3300005435 Ga0070714_100050852 Ga0070714_1000508524 380
89 3300005435 Ga0070714_100065304 Ga0070714_1000653042 380
90 3300005435 Ga0070714_100075978 Ga0070714_1000759783 380
91 3300005437 Ga0070710_10027923 Ga0070710_100279232 380
92 3300005548 Ga0070665_100000050 Ga0070665_10000005022 380
93 3300005548 Ga0070665_100018555 Ga0070665_1000185554 380
94 3300005563 Ga0068855_100102746 Ga0068855_1001027462 380
95 3300005617 Ga0068859_100171428 Ga0068859_1001714282 380
96 3300006028 Ga0070717_10038787 Ga0070717_100387873 380
97 3300006844 Ga0075428_100014595 Ga0075428_1000145952 380
98 3300006844 Ga0075428_100033344 Ga0075428_1000333444 380
99 3300006931 Ga0097620_100171422 Ga0097620_1001714222 380
100 3300009147 Ga0114129_10117477 Ga0114129_101174773 380
101 3300013104 Ga0157370_10051376 Ga0157370_100513763 380
102 3300013104 Ga0157370_10158036 Ga0157370_101580362 380
103 3300013105 Ga0157369_10047535 Ga0157369_100475353 380
104 3300013307 Ga0157372_10218435 Ga0157372_102184351 380
105 3300025909 Ga0207705_10041038 Ga0207705_100410382 380
106 3300025913 Ga0207695_10000310 Ga0207695_1000031070 380
107 3300025929 Ga0207664_10161780 Ga0207664_101617802 380
108 3300025986 Ga0207658_10007576 Ga0207658_100075769 380
109 3300028379 Ga0268266_10000183 Ga0268266_1000018348 380
110 3300028379 Ga0268266_10001100 Ga0268266_1000110028 380
111 3300031344 Ga0265316_10216273 Ga0265316_102162731 380
112 3300031852 Ga0307410_10032628 Ga0307410_100326282 380
113 3300036401 Ga0373937_0109953 Ga0373937_0109953_1080_2249 380
114 3300037418 Ga0395900_0158755 Ga0395900_0158755_1064_2236 380
115 3300038443 Ga0395901_0197209 Ga0395901_0197209_788_1960 380
116 3300045051 Ga0451576_0000327 Ga0451576_0000327_109204_110400 380
117 3300049569 Ga0501032_0066436 Ga0501032_0066436_543_1772 380
118 3300049570 Ga0501033_0039605 Ga0501033_0039605_520_1740 380
119 3300049571 Ga0501034_0002113 Ga0501034_0002113_16785_18014 380
120 3300049571 Ga0501034_0004021 Ga0501034_0004021_391_1560 380
121 3300049573 Ga0501037_0001148 Ga0501037_0001148_2407_3636 380
122 3300049574 Ga0501038_0002920 Ga0501038_0002920_7762_9117 380
123 3300049579 Ga0501043_0007792 Ga0501043_0007792_6216_7388 380
124 3300049579 Ga0501043_0186595 Ga0501043_0186595_56_1285 380
125 3300049580 Ga0501046_0000054 Ga0501046_0000054_78587_79759 380
126 3300049581 Ga0501047_0027596 Ga0501047_0027596_1718_2890 380
127 3300049581 Ga0501047_0042308 Ga0501047_0042308_1175_2365 380
128 3300049582 Ga0501048_0001910 Ga0501048_0001910_1138_2310 380
129 3300049742 Ga0501080_0088305 Ga0501080_0088305_257_1447 380
130 3300049744 Ga0501083_0000089 Ga0501083_0000089_41245_42417 380
131 3300049744 Ga0501083_0099663 Ga0501083_0099663_178_1320 380
132 3300049822 Ga0501035_0096065 Ga0501035_0096065_39_1397 380
133 3300049823 Ga0501044_0001451 Ga0501044_0001451_7202_8392 380
134 3300049823 Ga0501044_0022267 Ga0501044_0022267_1396_2565 380
135 3300049823 Ga0501044_0123074 Ga0501044_0123074_1102_2274 380
136 3300049823 Ga0501044_0440129 Ga0501044_0440129_30_1196 380
137 3300049824 Ga0501045_0033937 Ga0501045_0033937_2207_3379 380
138 3300060353 Ga0501082_0113142 Ga0501082_0113142_349_1539 380
139 3300060353 Ga0501082_0134778 Ga0501082_0134778_504_1676 380

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01264

Chorismate_synt

Chorismate synthase

66

424

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1qxo-assembly1.cif.gz_C crystal structure of chorismate synthase complexed with oxidized fmn and epsp 0.9593 4 380
1qxo-assembly1.cif.gz_C crystal structure of chorismate synthase complexed with oxidized fmn and epsp 0.9493 4 380
5z9a-assembly1.cif.gz_B crystal structure of chorismate synthase from pseudomonas aeruginosa 0.9441 1 356
5z9a-assembly1.cif.gz_A crystal structure of chorismate synthase from pseudomonas aeruginosa 0.9439 1 357
2qhf-assembly1.cif.gz_A mycobacterium tuberculosis chorismate synthase in complex with nca 0.9371 3 380
ID Description Score Start End Superfamily
af_Q2FYG9_1_387_3.60.150.10 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9529 4 378 3.60.150.10
5z9aA00 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9439 1 357 3.60.150.10
af_Q2FYG9_1_387_3.60.150.10 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9381 4 378 3.60.150.10
1q1lD00 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9299 1 380 3.60.150.10
1q1lD00 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9216 1 380 3.60.150.10
ID Description Score Start End GO Terms
AF-A0A7Y5SP27-F1-model_v4 Chorismate synthase (EC 4.2.3.5) 0.9969 80 380 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A812JYY2-F1-model_v4 Chorismate synthase (EC 4.2.3.5) 0.9955 2 376 GO:0003677
GO:0004107
GO:0004803
GO:0005829
GO:0006313
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A7V4M5R0-F1-model_v4 Chorismate synthase (CS) (EC 4.2.3.5) (5-enolpyruvylshikimate-3-phosphate phospholyase) 0.9954 3 380 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A286RKD3-F1-model_v4 Chorismate synthase (EC 4.2.3.5) 0.992 34 380 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A7V4M5R0-F1-model_v4 Chorismate synthase (CS) (EC 4.2.3.5) (5-enolpyruvylshikimate-3-phosphate phospholyase) 0.9902 3 380 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181

Feature Viewer

pLDDT pTM Quality
94.04 0.94 High
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Predicted Structure (AlphaFold2)

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