F177602

General Info

Members Datasets Scaffolds Average Seq Length
139 118 134 663

Family's Representative Sequence

Representative Sequence 3300049569|Ga0501032_0012413|Ga0501032_0012413_2190_4577
Length 795
Sequence MGLNKSFLFNIGLIGSTLLTSVLFFSSCTRGKKPEAQGLASDAAQKVYVAPGKYDEFYSFLSGGFSGQLATYGLPSGRLLKIIPVFSVNPENGYGFTEETKPMLNTSHGFVPWDDMHHTELSMKDGQPDGRWIFVNSNNTPRIARVDLSTFKTVEMIEIPHSGGNHGSPFATFNNEYVVASTRFSVPIPQKDFPIETRKKNFHGTISFVKVNPDSGEMSMGFQLLVPGIDYDLGHCGKGPSKDWCFFTSYNSEQAHSLIEINASKNDKDLLAAINWRVAEKCAAEGKAKKVPASYTHNLWDESTMRAHSQTIKETRFLDPRDCDGMIYYIPVAKSPHGCDVDPSGEYIVAGGKLAAQITAFSFSKIQQAIADKKFDGDFEGIRILDYPSTIAGIVEKPCLGPLHTEFDGKGYGYTSCFISSEVVKWKLGSWDVVDRIPTYYSIGHLMIPGGDSAKPYGKYLLAMNKITKDRYLPVGPELPQASQLIDISGDKMQLLLDFPTVGEPHYAQGIPASLLTERMQKLYDLEKNKHARAAKTEAATKVVREGKDVHVYMTAIRSHLTPDNIEGVKVGDTVYFHVTNIEQDWDIAHGFAIFGSDSAELLLMPGETATLKFQPSSPGIYPFYCTDFCSALHQEMQGYLRVSAANSNVPLTWRTEAPTSSKTADEKSAAADGAAKAVKMSESKGIGPVKSLSLGNVDAAMANQGKTIFESKCLACHKLDERFVGPALRGVTLRRQPEWIMNMIMNPTEMTQKDKVANDLLAEYATQMADLKVPEADARKILEYFRLGDSASKK

Samples

Sample ID Description Type Environment
1 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
2 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
3 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
4 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
80 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
81 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
93 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
94 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
95 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
96 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
97 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
108 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
109 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
110 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
113 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
114 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
115 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
116 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
117 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
118 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.4
Metatranscriptomes 0
Isolates 3.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.16
Nodule 0
Rhizoplane 2.88
Rhizosphere 88.49
Stem 0
Stem Tuber 0
Unclassified 6.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10007197 3300003320 Bacteria 152995
2 rootL2_10048850 3300003322 Bacteria 41711
3 rootH1_10033416 3300003323 Bacteria 13078
4 Ga0065715_10092203 3300005293 Bacteria 5259
5 Ga0065707_10107587 3300005295 Bacteria 2548
6 Ga0070676_10000075 3300005328 Bacteria 33506
7 Ga0070670_100006132 3300005331 Bacteria 10165
8 Ga0070670_100076191 3300005331 Bacteria 2882
9 Ga0068868_100056508 3300005338 Bacteria 3099
10 Ga0070660_100027632 3300005339 Bacteria 4236
11 Ga0070689_100010602 3300005340 Bacteria 6571
12 Ga0070668_100045655 3300005347 Bacteria 3362
13 Ga0070669_100004349 3300005353 Bacteria 10226
14 Ga0070671_100000537 3300005355 Bacteria 26675
15 Ga0070671_100008783 3300005355 Bacteria 8103
16 Ga0070659_100003984 3300005366 Bacteria 10513
17 Ga0070705_100003176 3300005440 Bacteria 8068
18 Ga0068867_100002842 3300005459 Bacteria 12170
19 Ga0070707_100001680 3300005468 Bacteria 21361
20 Ga0070698_100001058 3300005471 Bacteria 30280
21 Ga0070698_100028118 3300005471 Bacteria 5844
22 Ga0070698_100067473 3300005471 Bacteria 3597
23 Ga0070665_100060383 3300005548 Bacteria 3800
24 Ga0070704_100004900 3300005549 Bacteria 7768
25 Ga0068855_100005001 3300005563 Bacteria 16173
26 Ga0070664_100026976 3300005564 Bacteria 4771
27 Ga0068857_100021193 3300005577 Bacteria 5718
28 Ga0068856_100034023 3300005614 Bacteria 4991
29 Ga0068852_100003459 3300005616 Bacteria 11042
30 Ga0068859_100010366 3300005617 Bacteria 9375
31 Ga0068858_100146673 3300005842 Bacteria 2216
32 Ga0068862_100036319 3300005844 Bacteria 4177
33 Ga0097621_100000292 3300006237 Bacteria 33745
34 Ga0097621_100005907 3300006237 Bacteria 8652
35 Ga0097621_100036299 3300006237 Bacteria 3943
36 Ga0068871_100001804 3300006358 Bacteria 14446
37 Ga0075430_100014962 3300006846 Bacteria 6607
38 Ga0075431_100069424 3300006847 Bacteria 3635
39 Ga0075434_100113277 3300006871 Bacteria 2724
40 Ga0068865_100000035 3300006881 Bacteria 83915
41 Ga0111539_10113055 3300009094 Bacteria 3185
42 Ga0111539_10139125 3300009094 Bacteria 2843
43 Ga0114129_10187042 3300009147 Bacteria 2814
44 Ga0114129_10214584 3300009147 Bacteria 2599
45 Ga0105241_10012489 3300009174 Bacteria 6228
46 Ga0105241_10034629 3300009174 Bacteria 3795
47 Ga0105242_10017641 3300009176 Bacteria 5567
48 Ga0105237_10000408 3300009545 Bacteria 61180
49 Ga0105237_10001348 3300009545 Bacteria 32527
50 Ga0105238_10010200 3300009551 Bacteria 9418
51 Ga0105249_10001470 3300009553 Bacteria 20662
52 Ga0105249_10018344 3300009553 Bacteria 6222
53 Ga0105239_10139216 3300010375 Bacteria 2703
54 Ga0157374_10007623 3300013296 Bacteria 9239
55 Ga0157378_10015026 3300013297 Bacteria 6779
56 Ga0157378_10024950 3300013297 Bacteria 5265
57 Ga0157378_10052985 3300013297 Bacteria 3611
58 Ga0157375_10030228 3300013308 Bacteria 5105
59 Ga0163163_10031771 3300014325 Bacteria 5098
60 Ga0157380_10000004 3300014326 Bacteria 212844
61 Ga0157380_10008078 3300014326 Bacteria 7497
62 Ga0157377_10010539 3300014745 Bacteria 4576
63 Ga0157379_10054809 3300014968 Bacteria 3562
64 Ga0209258_100156 3300025242 Bacteria 156926
65 Ga0209148_1001131 3300025254 Bacteria 15737
66 Ga0207647_10003658 3300025904 Bacteria 11500
67 Ga0207645_10001796 3300025907 Bacteria 17323
68 Ga0207643_10001828 3300025908 Bacteria 11792
69 Ga0207643_10003432 3300025908 Bacteria 8527
70 Ga0207654_10003401 3300025911 Bacteria 8042
71 Ga0207695_10012714 3300025913 Bacteria 10079
72 Ga0207671_10000036 3300025914 Bacteria 236133
73 Ga0207671_10035215 3300025914 Bacteria 3717
74 Ga0207657_10001772 3300025919 Bacteria 23300
75 Ga0207644_10000606 3300025931 Bacteria 22831
76 Ga0207706_10105639 3300025933 Bacteria 2478
77 Ga0207686_10001912 3300025934 Bacteria 11530
78 Ga0207670_10014268 3300025936 Bacteria 4711
79 Ga0207704_10000240 3300025938 Bacteria 27085
80 Ga0207689_10029781 3300025942 Bacteria 4553
81 Ga0207679_10041662 3300025945 Bacteria 3294
82 Ga0207667_10000639 3300025949 Bacteria 45370
83 Ga0207651_10030262 3300025960 Bacteria 3444
84 Ga0207668_10003282 3300025972 Bacteria 9487
85 Ga0207702_10009025 3300026078 Bacteria 8397
86 Ga0207702_10024655 3300026078 Bacteria 4991
87 Ga0207641_10001149 3300026088 Bacteria 26584
88 Ga0207648_10006005 3300026089 Bacteria 12128
89 Ga0207674_10016678 3300026116 Bacteria 8027
90 Ga0207675_100028164 3300026118 Bacteria 5231
91 Ga0207698_10009798 3300026142 Bacteria 6120
92 Ga0207428_10089882 3300027907 Bacteria 2386
93 Ga0307517_10021443 3300028786 Bacteria 8162
94 Ga0307509_10024295 3300031507 Bacteria 6788
95 Ga0307408_100047151 3300031548 Bacteria 3085
96 Ga0307410_10003280 3300031852 Bacteria 8084
97 Ga0307412_10016341 3300031911 Bacteria 4420
98 Ga0307409_100009371 3300031995 Bacteria 6011
99 Ga0307416_100040673 3300032002 Bacteria 3614
100 Ga0307414_10014796 3300032004 Bacteria 4690
101 Ga0395900_0037971 3300037418 Bacteria 4966
102 Ga0395898_0045680 3300037466 Bacteria 4305
103 Ga0395905_0003682 3300037471 Bacteria 16236
104 Ga0451577_0022551 3300042876 Bacteria 5749
105 Ga0453683_0008608 3300044673 Bacteria 6843
106 Ga0453684_0000994 3300044712 Bacteria 92499
107 Ga0453684_0010555 3300044712 Bacteria 15763
108 Ga0453684_0029735 3300044712 Bacteria 7745
109 Ga0453684_0066283 3300044712 Bacteria 4599
110 Ga0451576_0015223 3300045051 Bacteria 8529
111 Ga0495603_0018259 3300046455 Bacteria 4243
112 Ga0496101_0041738 3300048904 Bacteria 3273
113 Ga0496108_0012205 3300048911 Bacteria 6988
114 Ga0496109_0033644 3300048912 Bacteria 4611
115 Ga0496113_0004640 3300048916 Bacteria 8470
116 Ga0501032_0012413 3300049569 Bacteria 6087
117 Ga0501033_0045302 3300049570 Bacteria 3274
118 Ga0501036_0080526 3300049572 Bacteria 2753
119 Ga0501043_0000251 3300049579 Bacteria 48637
120 Ga0501047_0036618 3300049581 Bacteria 4743
121 Ga0501067_0048117 3300049583 Bacteria 2365
122 Ga0501070_0025588 3300049586 Bacteria 4950
123 Ga0501076_0034112 3300049592 Bacteria 3976
124 Ga0501077_0016069 3300049593 Bacteria 4716
125 Ga0501217_003560 3300049661 Bacteria 3153
126 Ga0501221_003179 3300049704 Bacteria 2698
127 Ga0501080_0023210 3300049742 Bacteria 5753
128 nmdc:mga0qj67_2762_c1 3300050509 Bacteria 8806
129 nmdc:mga06r32_103125_c1 3300050510 Bacteria 2801
130 nmdc:mga08y16_2509_c1 3300050511 Bacteria 18877
131 nmdc:mga08y16_73666_c1 3300050511 Bacteria 3558
132 Ga0500608_000356 3300053122 Bacteria 17647
133 Ga0501084_0008923 3300054114 Bacteria 8295
134 Ga0530510_0047153 3300061734 Bacteria 3113

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049570 Ga0501033_0045302 Ga0501033_0045302_31_2073 555
2 3300005295 Ga0065707_10107587 Ga0065707_101075871 608
3 3300009147 Ga0114129_10214584 Ga0114129_102145842 628
4 3300005355 Ga0070671_100008783 Ga0070671_1000087833 629
5 3300053122 Ga0500608_000356 Ga0500608_000356_4291_6201 636
6 3300049593 Ga0501077_0016069 Ga0501077_0016069_1290_3233 640
7 3300005468 Ga0070707_100001680 Ga0070707_10000168014 643
8 3300005471 Ga0070698_100028118 Ga0070698_1000281184 643
9 3300005549 Ga0070704_100004900 Ga0070704_1000049003 643
10 3300031911 Ga0307412_10016341 Ga0307412_100163412 643
11 3300032002 Ga0307416_100040673 Ga0307416_1000406734 643
12 3300005548 Ga0070665_100060383 Ga0070665_1000603831 644
13 iso_pu_bacteria 2833640130 2833642059 644
14 3300005440 Ga0070705_100003176 Ga0070705_1000031764 646
15 3300042876 Ga0451577_0022551 Ga0451577_0022551_785_2740 646
16 3300049661 Ga0501217_003560 Ga0501217_003560_1156_3120 646
17 iso_pu_bacteria 2884634485 2884635142 646
18 3300005347 Ga0070668_100045655 Ga0070668_1000456552 647
19 3300014325 Ga0163163_10031771 Ga0163163_100317712 647
20 3300046455 Ga0495603_0018259 Ga0495603_0018259_2200_4170 647
21 3300049572 Ga0501036_0080526 Ga0501036_0080526_59_2053 647
22 3300049742 Ga0501080_0023210 Ga0501080_0023210_2393_4384 647
23 3300037418 Ga0395900_0037971 Ga0395900_0037971_1800_3782 648
24 3300037466 Ga0395898_0045680 Ga0395898_0045680_1946_3928 648
25 3300037471 Ga0395905_0003682 Ga0395905_0003682_1510_3492 648
26 3300049592 Ga0501076_0034112 Ga0501076_0034112_45_2045 648
27 3300054114 Ga0501084_0008923 Ga0501084_0008923_476_2476 648
28 3300061734 Ga0530510_0047153 Ga0530510_0047153_563_2563 648
29 3300005614 Ga0068856_100034023 Ga0068856_1000340235 650
30 3300026078 Ga0207702_10024655 Ga0207702_100246552 650
31 3300010375 Ga0105239_10139216 Ga0105239_101392162 651
32 3300049586 Ga0501070_0025588 Ga0501070_0025588_1725_3686 651
33 3300044712 Ga0453684_0066283 Ga0453684_0066283_1646_3634 652
34 iso_pu_bacteria 8003151029 8003156048 652
35 iso_pu_bacteria 2884791551 2884795128 653
36 iso_pu_bacteria 2896085136 2896089859 653
37 3300006237 Ga0097621_100036299 Ga0097621_1000362992 654
38 3300014326 Ga0157380_10000004 Ga0157380_10000004157 654
39 3300026118 Ga0207675_100028164 Ga0207675_1000281643 654
40 3300044673 Ga0453683_0008608 Ga0453683_0008608_3171_5150 655
41 3300005331 Ga0070670_100076191 Ga0070670_1000761912 656
42 3300005339 Ga0070660_100027632 Ga0070660_1000276322 656
43 3300005563 Ga0068855_100005001 Ga0068855_10000500113 656
44 3300005564 Ga0070664_100026976 Ga0070664_1000269764 656
45 3300006237 Ga0097621_100005907 Ga0097621_1000059072 656
46 3300013297 Ga0157378_10052985 Ga0157378_100529853 656
47 3300025919 Ga0207657_10001772 Ga0207657_1000177215 656
48 3300025945 Ga0207679_10041662 Ga0207679_100416623 656
49 3300025949 Ga0207667_10000639 Ga0207667_1000063919 656
50 3300048911 Ga0496108_0012205 Ga0496108_0012205_2120_4141 656
51 3300048912 Ga0496109_0033644 Ga0496109_0033644_1143_3164 656
52 3300048916 Ga0496113_0004640 Ga0496113_0004640_4214_6235 656
53 3300005293 Ga0065715_10092203 Ga0065715_100922034 657
54 3300005331 Ga0070670_100006132 Ga0070670_1000061324 657
55 3300005340 Ga0070689_100010602 Ga0070689_1000106027 657
56 3300005355 Ga0070671_100000537 Ga0070671_10000053711 657
57 3300005842 Ga0068858_100146673 Ga0068858_1001466731 657
58 3300005844 Ga0068862_100036319 Ga0068862_1000363192 657
59 3300009094 Ga0111539_10139125 Ga0111539_101391252 657
60 3300009545 Ga0105237_10001348 Ga0105237_1000134819 657
61 3300009553 Ga0105249_10018344 Ga0105249_100183442 657
62 3300014326 Ga0157380_10008078 Ga0157380_100080786 657
63 3300014745 Ga0157377_10010539 Ga0157377_100105394 657
64 3300025242 Ga0209258_100156 Ga0209258_1001563 657
65 3300025254 Ga0209148_1001131 Ga0209148_100113111 657
66 3300025904 Ga0207647_10003658 Ga0207647_100036587 657
67 3300025908 Ga0207643_10003432 Ga0207643_100034329 657
68 3300025913 Ga0207695_10012714 Ga0207695_100127145 657
69 3300025914 Ga0207671_10000036 Ga0207671_1000003636 657
70 3300025931 Ga0207644_10000606 Ga0207644_1000060611 657
71 3300025934 Ga0207686_10001912 Ga0207686_100019122 657
72 3300025936 Ga0207670_10014268 Ga0207670_100142682 657
73 3300025942 Ga0207689_10029781 Ga0207689_100297813 657
74 3300025960 Ga0207651_10030262 Ga0207651_100302623 657
75 3300026088 Ga0207641_10001149 Ga0207641_1000114924 657
76 3300027907 Ga0207428_10089882 Ga0207428_100898822 657
77 3300028786 Ga0307517_10021443 Ga0307517_100214436 657
78 3300031507 Ga0307509_10024295 Ga0307509_100242954 657
79 3300044712 Ga0453684_0010555 Ga0453684_0010555_5364_7355 657
80 3300050511 nmdc:mga08y16_2509_c1 nmdc:mga08y16_2509_c1_8399_10423 657
81 3300050511 nmdc:mga08y16_73666_c1 nmdc:mga08y16_73666_c1_767_2755 657
82 3300005328 Ga0070676_10000075 Ga0070676_1000007522 658
83 3300005338 Ga0068868_100056508 Ga0068868_1000565083 658
84 3300005459 Ga0068867_100002842 Ga0068867_1000028429 658
85 3300005616 Ga0068852_100003459 Ga0068852_1000034598 658
86 3300006237 Ga0097621_100000292 Ga0097621_10000029229 658
87 3300006358 Ga0068871_100001804 Ga0068871_1000018041 658
88 3300006871 Ga0075434_100113277 Ga0075434_1001132772 658
89 3300006881 Ga0068865_100000035 Ga0068865_10000003524 658
90 3300009174 Ga0105241_10012489 Ga0105241_100124898 658
91 3300009176 Ga0105242_10017641 Ga0105242_100176416 658
92 3300009545 Ga0105237_10000408 Ga0105237_1000040853 658
93 3300009551 Ga0105238_10010200 Ga0105238_100102007 658
94 3300013296 Ga0157374_10007623 Ga0157374_100076236 658
95 3300013297 Ga0157378_10024950 Ga0157378_100249503 658
96 3300013308 Ga0157375_10030228 Ga0157375_100302282 658
97 3300025907 Ga0207645_10001796 Ga0207645_1000179612 658
98 3300025911 Ga0207654_10003401 Ga0207654_100034014 658
99 3300025914 Ga0207671_10035215 Ga0207671_100352153 658
100 3300025933 Ga0207706_10105639 Ga0207706_101056391 658
101 3300025938 Ga0207704_10000240 Ga0207704_1000024023 658
102 3300026078 Ga0207702_10009025 Ga0207702_100090254 658
103 3300026089 Ga0207648_10006005 Ga0207648_100060057 658
104 3300026142 Ga0207698_10009798 Ga0207698_100097985 658
105 3300044712 Ga0453684_0000994 Ga0453684_0000994_88733_90727 658
106 3300044712 Ga0453684_0029735 Ga0453684_0029735_2802_4784 658
107 3300045051 Ga0451576_0015223 Ga0451576_0015223_191_2185 658
108 3300049581 Ga0501047_0036618 Ga0501047_0036618_843_2819 658
109 3300003322 rootL2_10048850 rootL2_1004885044 659
110 3300003323 rootH1_10033416 rootH1_100334168 659
111 3300005353 Ga0070669_100004349 Ga0070669_1000043493 659
112 3300005471 Ga0070698_100001058 Ga0070698_1000010581 659
113 3300005471 Ga0070698_100067473 Ga0070698_1000674733 659
114 3300005577 Ga0068857_100021193 Ga0068857_1000211932 659
115 3300006846 Ga0075430_100014962 Ga0075430_1000149625 659
116 3300006847 Ga0075431_100069424 Ga0075431_1000694242 659
117 3300009147 Ga0114129_10187042 Ga0114129_101870422 659
118 3300009553 Ga0105249_10001470 Ga0105249_100014702 659
119 3300013297 Ga0157378_10015026 Ga0157378_100150264 659
120 3300014968 Ga0157379_10054809 Ga0157379_100548092 659
121 3300025908 Ga0207643_10001828 Ga0207643_100018283 659
122 3300025972 Ga0207668_10003282 Ga0207668_100032822 659
123 3300026116 Ga0207674_10016678 Ga0207674_100166785 659
124 3300031548 Ga0307408_100047151 Ga0307408_1000471513 659
125 3300031852 Ga0307410_10003280 Ga0307410_100032809 659
126 3300031995 Ga0307409_100009371 Ga0307409_1000093715 659
127 3300032004 Ga0307414_10014796 Ga0307414_100147964 659
128 3300048904 Ga0496101_0041738 Ga0496101_0041738_501_2537 659
129 3300049583 Ga0501067_0048117 Ga0501067_0048117_309_2333 659
130 3300050509 nmdc:mga0qj67_2762_c1 nmdc:mga0qj67_2762_c1_5313_7334 659
131 3300050510 nmdc:mga06r32_103125_c1 nmdc:mga06r32_103125_c1_103_2124 659
132 3300003320 rootH2_10007197 rootH2_1000719787 660
133 3300005366 Ga0070659_100003984 Ga0070659_1000039846 660
134 3300005617 Ga0068859_100010366 Ga0068859_1000103663 660
135 3300009094 Ga0111539_10113055 Ga0111539_101130552 660
136 3300009174 Ga0105241_10034629 Ga0105241_100346292 660
137 3300049569 Ga0501032_0012413 Ga0501032_0012413_2190_4577 660
138 3300049579 Ga0501043_0000251 Ga0501043_0000251_41018_43405 660
139 3300049704 Ga0501221_003179 Ga0501221_003179_450_2543 660

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF18764

nos_propeller

Nitrous oxide reductase propeller repeat

436

506

0.99

PF00034

Cytochrom_C

Cytochrome c

703

788

0.85

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

701

771

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5i5j-assembly1.cif.gz_A shewanella denitrificans nitrous oxide reductase, reduced apo form 0.8774 37 633
5i5m-assembly1.cif.gz_A shewanella denitrificans nitrous oxide reductase, ca2+-reconstituted form 0.8769 37 635
5i5j-assembly1.cif.gz_B shewanella denitrificans nitrous oxide reductase, reduced apo form 0.8754 37 633
1qni-assembly3.cif.gz_F crystal structure of nitrous oxide reductase from pseudomonas nautica, at 2.4a resolution 0.8732 38 635
5i5j-assembly1.cif.gz_A shewanella denitrificans nitrous oxide reductase, reduced apo form 0.8726 37 633
ID Description Score Start End Superfamily
5i5jA01 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8923 37 515 2.130.10.10
af_Q79FU0_283_386_2.40.10.500 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.8782 325 441 2.40.10.500
5i5jA01 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.876 37 515 2.130.10.10
af_C0H4D3_525_642_2.40.128.630 Mainly Beta;Beta Barrel;Lipocalin; 0.8741 326 453 2.40.128.630
af_K7KNR2_141_326_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8732 326 492 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A7J5E6Q7-F1-model_v4 Nitrous oxide reductase 0.9731 60 437 GO:0030313
AF-A0A7Y2MUJ4-F1-model_v4 Sec-dependent nitrous-oxide reductase (EC 1.7.2.4) 0.9701 33 618 GO:0030313
GO:0050304
AF-A0A7J5E6Q7-F1-model_v4 Nitrous oxide reductase 0.968 60 437 GO:0030313
AF-A0A354X2G2-F1-model_v4 Sec-dependent nitrous-oxide reductase 0.9676 34 645 GO:0030313
AF-B8R0A8-F1-model_v4 Nitrous-oxide reductase 0.9669 326 411

Feature Viewer

pLDDT pTM Quality
86.45 0.87 High
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Predicted Structure (AlphaFold2)

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