F176072

General Info

Members Datasets Scaffolds Average Seq Length
139 125 136 331

Family's Representative Sequence

Representative Sequence 3300009092|Ga0105250_10001326|Ga0105250_1000132614
Length 361
Sequence MNMEPWPPSTFAAARSLDSRGLAPAPGLSVVVPCYNEEESLAQLVHRVTAACTAFVGDDFELVLVNDGSRDRTWPIMNALAQRHPQLVLVNLAGNYGHQLALSAGLQVCRGEAILVMDADLQDPPELLPDFLARLAEGHDVVYGQRVTRAGETMFKRATASLFYRTMQRMVDVPIPRDTGDFRIMTRRVVDHLNAMPERYRFIRGMVSLIGFSQVALPYEREARFAGQSKYPLRKMLAFAFDAITSFSTVPLRLATYLGFIAGALGVVTLGWVLACYLLGRTLAGWTSLAGIVLIIGSLQLVMLGIFGEYLGRMYMESKRRPLFIIDEVRGSGMTACSRAAGIIGHTTPDSFNIATQVANG

Samples

Sample ID Description Type Environment
1 2513237102 Bradyrhizobium japonicum USDA 135 Isolate Nodule
2 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
3 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
7 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
36 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
79 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
80 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
81 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
82 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
83 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
84 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
85 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
86 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
87 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
88 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
89 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
90 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
91 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
92 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
93 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
94 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
95 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
96 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
97 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
100 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
101 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
104 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
105 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
106 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
107 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
108 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
109 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
110 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
111 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
112 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
113 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
117 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
118 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
119 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
120 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
121 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
122 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
123 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
124 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
125 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.84
Metatranscriptomes 0
Isolates 2.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.07
Nodule 0.72
Rhizoplane 1.44
Rhizosphere 79.86
Stem 0
Stem Tuber 0
Unclassified 7.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000167 3300002987 Bacteria 30455
2 JGI25160J50197_1000288 3300003354 Bacteria 36505
3 JGI25161J50226_1000215 3300003374 Bacteria 36505
4 Ga0055543_1000006 3300004625 Bacteria 214206
5 Ga0065165_1000215 3300005262 Bacteria 100238
6 Ga0070676_10081085 3300005328 Bacteria 1969
7 Ga0070670_100000010 3300005331 Bacteria 277365
8 Ga0068869_100098867 3300005334 Bacteria 2205
9 Ga0070666_10000386 3300005335 Bacteria 27689
10 Ga0070682_100236222 3300005337 Unclassified 1310
11 Ga0070688_100001405 3300005365 Bacteria 12000
12 Ga0070667_100000124 3300005367 Bacteria 98412
13 Ga0070711_100039543 3300005439 Unclassified 3178
14 Ga0070711_100192195 3300005439 Bacteria 1570
15 Ga0070700_100047638 3300005441 Bacteria 2653
16 Ga0070662_100033101 3300005457 Bacteria 3638
17 Ga0070685_10000001 3300005466 Bacteria 349867
18 Ga0070707_100055156 3300005468 Bacteria 3810
19 Ga0070698_100217859 3300005471 Bacteria 1843
20 Ga0070679_100079378 3300005530 Bacteria 3271
21 Ga0070696_100061679 3300005546 Bacteria 2623
22 Ga0070693_100093089 3300005547 Bacteria 1821
23 Ga0070665_100001675 3300005548 Bacteria 25533
24 Ga0070665_100023630 3300005548 Bacteria 6189
25 Ga0068855_100020422 3300005563 Bacteria 7943
26 Ga0068856_100120793 3300005614 Bacteria 2621
27 Ga0068864_100000018 3300005618 Bacteria 277365
28 Ga0068861_100157901 3300005719 Bacteria 1868
29 Ga0068863_100002135 3300005841 Bacteria 19620
30 Ga0068860_100000736 3300005843 Bacteria 37295
31 Ga0081455_10000257 3300005937 Bacteria 69896
32 Ga0081455_10013211 3300005937 Bacteria 8179
33 Ga0070712_100115429 3300006175 Bacteria 2012
34 Ga0068865_100049139 3300006881 Bacteria 2906
35 Ga0099794_10106539 3300007265 Bacteria 1402
36 Ga0105250_10001326 3300009092 Bacteria 13524
37 Ga0111539_10507769 3300009094 Bacteria 1404
38 Ga0105247_10001361 3300009101 Bacteria 17769
39 Ga0105241_10039675 3300009174 Bacteria 3552
40 Ga0105248_10036543 3300009177 Bacteria 5494
41 Ga0105238_10175543 3300009551 Bacteria 2119
42 Ga0105249_10025942 3300009553 Bacteria 5278
43 Ga0099796_10064237 3300010159 Bacteria 1309
44 Ga0105239_10568051 3300010375 Bacteria 1292
45 Ga0105246_10298508 3300011119 Unclassified 1299
46 Ga0157371_10064573 3300013102 Bacteria 2593
47 Ga0157369_10035685 3300013105 Bacteria 5450
48 Ga0163162_10349316 3300013306 Bacteria 1612
49 Ga0157372_10089808 3300013307 Bacteria 3491
50 Ga0163163_10000069 3300014325 Bacteria 114043
51 Ga0157380_10206563 3300014326 Bacteria 1747
52 Ga0157379_10013460 3300014968 Bacteria 7167
53 Ga0163161_10165515 3300017792 Bacteria 1688
54 Ga0209436_101452 3300025208 Bacteria 8284
55 Ga0209130_1000053 3300025284 Bacteria 214421
56 Ga0209256_1011584 3300025299 Bacteria 3505
57 Ga0207426_1000054 3300025302 Bacteria 384435
58 Ga0207696_1002800 3300025711 Bacteria 8275
59 Ga0207710_10001617 3300025900 Bacteria 11019
60 Ga0207680_10000251 3300025903 Bacteria 25767
61 Ga0207693_10060413 3300025915 Bacteria 2969
62 Ga0207663_10062788 3300025916 Bacteria 2363
63 Ga0207660_10253251 3300025917 Unclassified 1390
64 Ga0207646_10065595 3300025922 Bacteria 3242
65 Ga0207650_10000003 3300025925 Bacteria 1123235
66 Ga0207706_10068841 3300025933 Bacteria 3114
67 Ga0207689_10083240 3300025942 Bacteria 2631
68 Ga0207667_10087062 3300025949 Bacteria 3232
69 Ga0207712_10053030 3300025961 Unclassified 2843
70 Ga0207658_10000007 3300025986 Bacteria 329651
71 Ga0207678_10005056 3300026067 Bacteria 11831
72 Ga0207641_10001615 3300026088 Bacteria 21989
73 Ga0207676_10000003 3300026095 Bacteria 1123235
74 Ga0207674_10361350 3300026116 Unclassified 1403
75 Ga0207683_10187436 3300026121 Bacteria 1877
76 Ga0268266_10001325 3300028379 Bacteria 30013
77 Ga0268266_10016707 3300028379 Bacteria 6273
78 Ga0268264_10000009 3300028381 Bacteria 724972
79 Ga0265334_10024995 3300028573 Unclassified 2420
80 Ga0265318_10000784 3300028577 Bacteria 21067
81 Ga0265336_10004310 3300028666 Bacteria 5402
82 Ga0265338_10007867 3300028800 Bacteria 13091
83 Ga0265338_10050087 3300028800 Unclassified 3779
84 Ga0265338_10079725 3300028800 Unclassified 2754
85 Ga0265324_10010137 3300029957 Bacteria 3650
86 Ga0265340_10015728 3300031247 Bacteria 3927
87 Ga0265331_10020066 3300031250 Unclassified 3438
88 Ga0265327_10015504 3300031251 Bacteria 4910
89 Ga0265316_10002684 3300031344 Bacteria 18330
90 Ga0307408_100110096 3300031548 Bacteria 2114
91 Ga0307516_10043999 3300031730 Bacteria 4421
92 Ga0307410_10110635 3300031852 Bacteria 1987
93 Ga0307406_10049995 3300031901 Unclassified 2648
94 Ga0373926_0001176 3300035083 Bacteria 7804
95 Ga0373923_0017635 3300035111 Bacteria 2734
96 Ga0373936_0052340 3300035113 Bacteria 1654
97 Ga0373943_0020029 3300035170 Bacteria 3081
98 Ga0373935_0001823 3300035692 Bacteria 11948
99 Ga0373927_0000981 3300035695 Bacteria 21691
100 Ga0373947_0003808 3300035725 Bacteria 8892
101 Ga0373925_0008145 3300037068 Bacteria 7632
102 Ga0436365_1653311 3300039437 Bacteria 3542
103 Ga0451577_0051432 3300042876 Bacteria 3678
104 Ga0466963_0187383 3300044694 Bacteria 1445
105 Ga0453684_0008232 3300044712 Bacteria 18796
106 Ga0453684_0009628 3300044712 Bacteria 16845
107 Ga0453684_0017232 3300044712 Bacteria 11216
108 Ga0453684_0063153 3300044712 Bacteria 4740
109 Ga0451576_0017544 3300045051 Bacteria 7867
110 Ga0451576_0298880 3300045051 Unclassified 1683
111 Ga0495638_0000512 3300046460 Bacteria 45543
112 Ga0495647_0012517 3300046681 Bacteria 2923
113 Ga0495624_0164154 3300046690 Bacteria 1356
114 Ga0495600_0205225 3300046809 Bacteria 1264
115 Ga0496101_0146366 3300048904 Bacteria 1804
116 Ga0496106_0000058 3300048909 Bacteria 88804
117 Ga0496120_0117833 3300048923 Bacteria 1377
118 Ga0496121_0001067 3300048924 Bacteria 48503
119 Ga0496121_0046076 3300048924 Bacteria 3737
120 Ga0496122_0014435 3300048925 Bacteria 7640
121 Ga0496123_0006651 3300048926 Bacteria 11147
122 Ga0496125_0147514 3300048928 Bacteria 1623
123 Ga0496126_0000548 3300048929 Bacteria 72393
124 Ga0496126_0016463 3300048929 Bacteria 7392
125 Ga0501070_0001411 3300049586 Bacteria 21509
126 Ga0501070_0004224 3300049586 Bacteria 12351
127 Ga0501070_0013843 3300049586 Bacteria 6794
128 Ga0501227_008909 3300049665 Bacteria 2157
129 Ga0501080_0451680 3300049742 Bacteria 1152
130 Ga0501083_0047262 3300049744 Bacteria 2908
131 nmdc:mga06z11_66715_c1 3300050494 Bacteria 1892
132 nmdc:mga07m45_10250_c1 3300050496 Unclassified 4888
133 nmdc:mga09592_80914_c1 3300050508 Bacteria 2767
134 Ga0500643_011297 3300053087 Bacteria 3265
135 Ga0500597_008989 3300053120 Bacteria 3490
136 Ga0500590_000679 3300053148 Bacteria 12256

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005937 Ga0081455_10013211 Ga0081455_100132116 282
2 3300028800 Ga0265338_10007867 Ga0265338_100078673 294
3 3300039437 Ga0436365_1653311 Ga0436365_1653311_1976_3058 295
4 3300013105 Ga0157369_10035685 Ga0157369_100356854 299
5 3300013307 Ga0157372_10089808 Ga0157372_100898083 299
6 3300026116 Ga0207674_10361350 Ga0207674_103613501 299
7 3300025299 Ga0209256_1011584 Ga0209256_10115842 300
8 3300029957 Ga0265324_10010137 Ga0265324_100101372 302
9 3300044694 Ga0466963_0187383 Ga0466963_0187383_412_1392 306
10 3300005563 Ga0068855_100020422 Ga0068855_1000204224 308
11 3300025949 Ga0207667_10087062 Ga0207667_100870623 308
12 3300005468 Ga0070707_100055156 Ga0070707_1000551564 310
13 3300009094 Ga0111539_10507769 Ga0111539_105077692 310
14 3300025922 Ga0207646_10065595 Ga0207646_100655952 310
15 3300031251 Ga0265327_10015504 Ga0265327_100155042 310
16 3300031901 Ga0307406_10049995 Ga0307406_100499952 310
17 3300031548 Ga0307408_100110096 Ga0307408_1001100962 311
18 3300031852 Ga0307410_10110635 Ga0307410_101106352 311
19 3300044712 Ga0453684_0008232 Ga0453684_0008232_11629_12576 311
20 3300044712 Ga0453684_0009628 Ga0453684_0009628_2941_3891 311
21 3300045051 Ga0451576_0298880 Ga0451576_0298880_615_1568 311
22 iso_pu_bacteria 2582581867 2585403172 311
23 iso_pu_bacteria 2852387548 2852393933 311
24 3300005331 Ga0070670_100000010 Ga0070670_10000001077 312
25 3300005335 Ga0070666_10000386 Ga0070666_100003869 312
26 3300005337 Ga0070682_100236222 Ga0070682_1002362221 312
27 3300005365 Ga0070688_100001405 Ga0070688_10000140511 312
28 3300005367 Ga0070667_100000124 Ga0070667_10000012439 312
29 3300005441 Ga0070700_100047638 Ga0070700_1000476382 312
30 3300006881 Ga0068865_100049139 Ga0068865_1000491392 312
31 3300026067 Ga0207678_10005056 Ga0207678_100050563 312
32 3300028573 Ga0265334_10024995 Ga0265334_100249952 312
33 3300028577 Ga0265318_10000784 Ga0265318_1000078416 312
34 3300028800 Ga0265338_10050087 Ga0265338_100500872 312
35 3300031247 Ga0265340_10015728 Ga0265340_100157284 312
36 3300031250 Ga0265331_10020066 Ga0265331_100200662 312
37 3300048929 Ga0496126_0000548 Ga0496126_0000548_21559_22512 312
38 3300005466 Ga0070685_10000001 Ga0070685_1000000191 313
39 3300005548 Ga0070665_100023630 Ga0070665_1000236302 313
40 3300005618 Ga0068864_100000018 Ga0068864_100000018218 313
41 3300005841 Ga0068863_100002135 Ga0068863_1000021359 313
42 3300005843 Ga0068860_100000736 Ga0068860_10000073615 313
43 3300005937 Ga0081455_10000257 Ga0081455_1000025740 313
44 3300009101 Ga0105247_10001361 Ga0105247_100013619 313
45 3300009177 Ga0105248_10036543 Ga0105248_100365435 313
46 3300009553 Ga0105249_10025942 Ga0105249_100259422 313
47 3300014325 Ga0163163_10000069 Ga0163163_1000006913 313
48 3300025900 Ga0207710_10001617 Ga0207710_100016177 313
49 3300025903 Ga0207680_10000251 Ga0207680_100002519 313
50 3300025925 Ga0207650_10000003 Ga0207650_10000003424 313
51 3300025961 Ga0207712_10053030 Ga0207712_100530302 313
52 3300025986 Ga0207658_10000007 Ga0207658_10000007213 313
53 3300026088 Ga0207641_10001615 Ga0207641_100016157 313
54 3300026095 Ga0207676_10000003 Ga0207676_10000003671 313
55 3300028379 Ga0268266_10016707 Ga0268266_100167075 313
56 3300028381 Ga0268264_10000009 Ga0268264_10000009240 313
57 3300028800 Ga0265338_10079725 Ga0265338_100797252 313
58 3300048928 Ga0496125_0147514 Ga0496125_0147514_383_1372 313
59 3300049586 Ga0501070_0013843 Ga0501070_0013843_4935_5915 313
60 3300005614 Ga0068856_100120793 Ga0068856_1001207932 314
61 3300028666 Ga0265336_10004310 Ga0265336_100043104 314
62 3300031344 Ga0265316_10002684 Ga0265316_100026849 314
63 3300048909 Ga0496106_0000058 Ga0496106_0000058_42925_43989 314
64 3300048924 Ga0496121_0001067 Ga0496121_0001067_9477_10541 314
65 3300005439 Ga0070711_100039543 Ga0070711_1000395432 315
66 3300005547 Ga0070693_100093089 Ga0070693_1000930892 315
67 3300006175 Ga0070712_100115429 Ga0070712_1001154291 315
68 3300009092 Ga0105250_10001326 Ga0105250_1000132614 315
69 3300009551 Ga0105238_10175543 Ga0105238_101755432 315
70 3300025711 Ga0207696_1002800 Ga0207696_10028004 315
71 3300025915 Ga0207693_10060413 Ga0207693_100604131 315
72 3300025916 Ga0207663_10062788 Ga0207663_100627882 315
73 3300048904 Ga0496101_0146366 Ga0496101_0146366_389_1474 315
74 3300048923 Ga0496120_0117833 Ga0496120_0117833_145_1092 315
75 3300048924 Ga0496121_0046076 Ga0496121_0046076_1434_2411 315
76 3300049665 Ga0501227_008909 Ga0501227_008909_769_1749 315
77 3300005471 Ga0070698_100217859 Ga0070698_1002178591 316
78 3300005548 Ga0070665_100001675 Ga0070665_10000167516 316
79 3300009174 Ga0105241_10039675 Ga0105241_100396752 316
80 3300014968 Ga0157379_10013460 Ga0157379_100134603 316
81 3300028379 Ga0268266_10001325 Ga0268266_1000132519 316
82 3300049586 Ga0501070_0004224 Ga0501070_0004224_8990_9976 316
83 3300049744 Ga0501083_0047262 Ga0501083_0047262_1433_2422 316
84 3300050494 nmdc:mga06z11_66715_c1 nmdc:mga06z11_66715_c1_882_1859 316
85 3300050496 nmdc:mga07m45_10250_c1 nmdc:mga07m45_10250_c1_884_1861 316
86 3300005328 Ga0070676_10081085 Ga0070676_100810852 317
87 3300005457 Ga0070662_100033101 Ga0070662_1000331012 317
88 3300005530 Ga0070679_100079378 Ga0070679_1000793784 317
89 3300005546 Ga0070696_100061679 Ga0070696_1000616792 317
90 3300005719 Ga0068861_100157901 Ga0068861_1001579012 317
91 3300010375 Ga0105239_10568051 Ga0105239_105680512 317
92 3300014326 Ga0157380_10206563 Ga0157380_102065632 317
93 3300017792 Ga0163161_10165515 Ga0163161_101655152 317
94 3300025917 Ga0207660_10253251 Ga0207660_102532511 317
95 3300025933 Ga0207706_10068841 Ga0207706_100688411 317
96 3300026121 Ga0207683_10187436 Ga0207683_101874362 317
97 3300046460 Ga0495638_0000512 Ga0495638_0000512_19384_20415 317
98 3300048925 Ga0496122_0014435 Ga0496122_0014435_541_1572 317
99 3300048926 Ga0496123_0006651 Ga0496123_0006651_789_1820 317
100 3300048929 Ga0496126_0016463 Ga0496126_0016463_5689_6720 317
101 3300002987 JGI25159J45721_1000167 JGI25159J45721_100016718 318
102 3300003354 JGI25160J50197_1000288 JGI25160J50197_100028814 318
103 3300003374 JGI25161J50226_1000215 JGI25161J50226_100021525 318
104 3300004625 Ga0055543_1000006 Ga0055543_1000006201 318
105 3300005262 Ga0065165_1000215 Ga0065165_10002158 318
106 3300005334 Ga0068869_100098867 Ga0068869_1000988672 318
107 3300005439 Ga0070711_100192195 Ga0070711_1001921952 318
108 3300007265 Ga0099794_10106539 Ga0099794_101065392 318
109 3300010159 Ga0099796_10064237 Ga0099796_100642371 318
110 3300011119 Ga0105246_10298508 Ga0105246_102985081 318
111 3300013102 Ga0157371_10064573 Ga0157371_100645733 318
112 3300013306 Ga0163162_10349316 Ga0163162_103493162 318
113 3300025208 Ga0209436_101452 Ga0209436_1014522 318
114 3300025284 Ga0209130_1000053 Ga0209130_1000053189 318
115 3300025302 Ga0207426_1000054 Ga0207426_1000054357 318
116 3300025942 Ga0207689_10083240 Ga0207689_100832402 318
117 3300031730 Ga0307516_10043999 Ga0307516_100439992 318
118 3300035083 Ga0373926_0001176 Ga0373926_0001176_2680_3708 318
119 3300035111 Ga0373923_0017635 Ga0373923_0017635_572_1600 318
120 3300035113 Ga0373936_0052340 Ga0373936_0052340_456_1484 318
121 3300035170 Ga0373943_0020029 Ga0373943_0020029_1210_2238 318
122 3300035692 Ga0373935_0001823 Ga0373935_0001823_3167_4195 318
123 3300035695 Ga0373927_0000981 Ga0373927_0000981_10138_11166 318
124 3300035725 Ga0373947_0003808 Ga0373947_0003808_2654_3682 318
125 3300037068 Ga0373925_0008145 Ga0373925_0008145_3166_4194 318
126 3300042876 Ga0451577_0051432 Ga0451577_0051432_1607_2584 318
127 3300044712 Ga0453684_0017232 Ga0453684_0017232_2042_3016 318
128 3300044712 Ga0453684_0063153 Ga0453684_0063153_1861_2841 318
129 3300045051 Ga0451576_0017544 Ga0451576_0017544_4539_5519 318
130 3300046681 Ga0495647_0012517 Ga0495647_0012517_1355_2383 318
131 3300046690 Ga0495624_0164154 Ga0495624_0164154_69_1097 318
132 3300046809 Ga0495600_0205225 Ga0495600_0205225_250_1224 318
133 3300049586 Ga0501070_0001411 Ga0501070_0001411_17774_18766 318
134 3300049742 Ga0501080_0451680 Ga0501080_0451680_78_1070 318
135 3300050508 nmdc:mga09592_80914_c1 nmdc:mga09592_80914_c1_555_1544 318
136 3300053087 Ga0500643_011297 Ga0500643_011297_799_1833 318
137 3300053120 Ga0500597_008989 Ga0500597_008989_1763_2779 318
138 3300053148 Ga0500590_000679 Ga0500590_000679_1329_2303 318
139 iso_pu_bacteria 2513237102 2513703894 318

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00535

Glycos_transf_2

Glycosyl transferase family 2

29

193

0.98

PF13641

Glyco_tranf_2_3

Glycosyltransferase like family 2

25

205

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ekp-assembly1.cif.gz_A structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.8149 1 309
5eke-assembly1.cif.gz_A structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (f215a mutant) 0.809 1 309
5ekp-assembly1.cif.gz_B structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.7903 1 309
5ekp-assembly1.cif.gz_A structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.7893 1 309
5ekp-assembly1.cif.gz_D structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.7878 1 309
ID Description Score Start End Superfamily
af_P77293_1_188_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9327 5 189 3.90.550.10
af_P77293_1_188_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9139 5 189 3.90.550.10
af_Q2G2T7_1_208_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8608 5 204 3.90.550.10
af_Q9NB13_8_220_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.8506 226 293 1.20.140.150
af_P9WMX5_1_216_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.847 4 217 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A7C4KIH1-F1-model_v4 Glycosyltransferase 0.9696 1 119 GO:0005886
GO:0016757
AF-A0A641VI84-F1-model_v4 deleted 0.9663 4 115
AF-A0A2N2ZS93-F1-model_v4 Glycosyltransferase 0.9633 4 185 GO:0005886
GO:0099621
AF-A0A847AJ17-F1-model_v4 Glycosyltransferase family 2 protein 0.959 2 130 GO:0005886
GO:0016757
AF-A0A523V6E2-F1-model_v4 Glycosyltransferase 0.9583 4 114 GO:0005886
GO:0016757

Feature Viewer

pLDDT pTM Quality
76.54 0.67 Medium
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Predicted Structure (AlphaFold2)

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