F175007

General Info

Members Datasets Scaffolds Average Seq Length
139 111 106 317

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10170011|rootH2_101700115
Length 372
Sequence MFTPGKLPPRIRSGSHKKMTYWRSKILRGTLSFHCSYSEMKLPIYVLISIMLPGYNICQAQTKKKMENNNPLLCNPESGICEIPAHNTASADSNHFKSEKKPVRIIYYTDPICSSCWGIEPQLRKLKSEYGQSIEIEYRMGGLLPDWSYNSGGISKPSDVAHHWDEVSLHYDMPIDGDVWLEDPLPSSYPPSIAFKAAQLQDNKKAVLFLREIREMVFLKKKNITKWEHLELAAKNVGLDIAQFKKDYEGDAKELFNKDLQLARESGVRGFPTIFFADTTGKTEMVYGSKPYSAYENALLKIHSGIPKAPYDKSWPALFSTYHSLTAKEFTELTGTPRAESERILDELTANGKLEKLVTKNGAIWISKNINR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
3 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
4 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
5 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
6 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
7 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
8 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
9 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
10 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
11 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
12 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
13 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
14 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
15 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
16 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
17 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
18 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
19 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
20 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
21 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
22 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
23 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
24 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
25 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
26 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
27 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
28 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
29 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
30 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
31 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
32 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
33 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
34 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
35 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
36 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
37 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
38 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
39 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
40 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
41 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
42 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
43 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
44 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
45 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
46 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
47 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
60 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
61 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
62 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
65 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
70 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
75 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
76 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
77 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
78 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
81 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
82 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
85 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
86 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
87 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
88 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
91 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
92 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
93 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
94 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
104 3300049681 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought Metagenome Rhizosphere
105 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
106 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
110 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
111 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.54
Metatranscriptomes 0
Isolates 24.46

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.47
Nodule 2.16
Rhizoplane 0.72
Rhizosphere 69.06
Stem 0
Stem Tuber 0
Unclassified 21.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2879104 2162886007 Bacteria 104588
2 rootH1_10065247 3300003316 Bacteria 2150
3 rootH1_10148649 3300003316 Bacteria 2170
4 rootH1_10148649 3300003323 Bacteria 2343
5 rootH2_10170011 3300003320 Bacteria 6215
6 rootL2_10036109 3300003322 Unclassified 2915
7 rootL2_10042845 3300003322 Bacteria 10085
8 rootL2_10183118 3300003322 Bacteria 4576
9 rootH1_10007688 3300003323 Bacteria 27506
10 Ga0055536_1000024 3300003781 Bacteria 185534
11 Ga0055530_10003260 3300003791 Bacteria 9440
12 Ga0065165_1002071 3300005262 Bacteria 18485
13 Ga0065714_10065160 3300005288 Bacteria 12401
14 Ga0065704_10070133 3300005289 Bacteria 1266035
15 Ga0065704_10089628 3300005289 Bacteria 2844
16 Ga0065704_10102352 3300005289 Bacteria 2208
17 Ga0070660_100020684 3300005339 Bacteria 4841
18 Ga0070684_100252251 3300005535 Unclassified 1613
19 Ga0070664_100089243 3300005564 Bacteria 2667
20 Ga0068871_100157001 3300006358 Bacteria 1943
21 Ga0099824_1001974 3300006942 Bacteria 29757
22 Ga0079104_1000052 3300006946 Bacteria 170223
23 Ga0105251_10033835 3300009011 Bacteria 2534
24 Ga0157373_10000010 3300013100 Bacteria 195861
25 Ga0157373_10002664 3300013100 Bacteria 13545
26 Ga0157371_10003517 3300013102 Bacteria 14146
27 Ga0157371_10008366 3300013102 Bacteria 8248
28 Ga0157371_10045307 3300013102 Bacteria 3130
29 Ga0157371_10143521 3300013102 Bacteria 1701
30 Ga0157370_10000029 3300013104 Bacteria 145930
31 Ga0157370_10000106 3300013104 Bacteria 96408
32 Ga0157370_10022647 3300013104 Bacteria 6251
33 Ga0157369_10024636 3300013105 Bacteria 6690
34 Ga0157378_10424096 3300013297 Bacteria 1315
35 Ga0163162_10046082 3300013306 Bacteria 4370
36 Ga0157372_10471687 3300013307 Bacteria 1463
37 Ga0157375_10000771 3300013308 Bacteria 28093
38 Ga0182008_10037545 3300014497 Bacteria 2424
39 Ga0182008_10062606 3300014497 Unclassified 1833
40 Ga0157376_10245820 3300014969 Bacteria 1669
41 Ga0182006_1000001 3300015261 Bacteria 1091090
42 Ga0182006_1001751 3300015261 Bacteria 12597
43 Ga0182006_1034526 3300015261 Bacteria 2022
44 Ga0182006_1048501 3300015261 Bacteria 1642
45 Ga0182007_10009598 3300015262 Bacteria 3889
46 Ga0163161_10011910 3300017792 Bacteria 6035
47 Ga0163161_10037910 3300017792 Bacteria 3455
48 Ga0209436_109642 3300025208 Bacteria 1821
49 Ga0209676_1000008 3300025292 Bacteria 991778
50 Ga0209050_1000055 3300025298 Bacteria 339254
51 Ga0207426_1010320 3300025302 Bacteria 3632
52 Ga0209257_1000077 3300025304 Bacteria 317964
53 Ga0207657_10087680 3300025919 Unclassified 2603
54 Ga0207679_10065866 3300025945 Bacteria 2713
55 Ga0207698_10199544 3300026142 Unclassified 1790
56 Ga0209281_1000210 3300027111 Bacteria 132199
57 Ga0209995_1019138 3300027471 Unclassified 1130
58 Ga0307412_10000006 3300031911 Bacteria 506878
59 Ga0307412_10000119 3300031911 Bacteria 59926
60 Ga0307416_100000059 3300032002 Bacteria 103158
61 Ga0307414_10001999 3300032004 Bacteria 10587
62 Ga0307414_10014809 3300032004 Bacteria 4688
63 Ga0307414_10060681 3300032004 Bacteria 2675
64 Ga0307411_10001478 3300032005 Bacteria 9656
65 Ga0439466_0071146 3300041411 Bacteria 1107
66 Ga0439465_0000004 3300041413 Bacteria 68032
67 Ga0439445_0000039 3300042004 Bacteria 17900
68 Ga0439432_057396 3300042006 Bacteria 1205
69 Ga0466972_0082064 3300044658 Unclassified 1534
70 Ga0453684_0006234 3300044712 Bacteria 22857
71 Ga0495627_001392 3300046453 Bacteria 14316
72 Ga0495627_012329 3300046453 Bacteria 3039
73 Ga0495610_0000005 3300046512 Bacteria 924111
74 Ga0495632_0004920 3300046519 Bacteria 8959
75 Ga0495654_0000001 3300046530 Bacteria 1513197
76 Ga0495609_0000003 3300046538 Bacteria 711547
77 Ga0495633_0000008 3300046558 Bacteria 301830
78 Ga0495633_0001538 3300046558 Bacteria 17716
79 Ga0495625_0008088 3300046660 Bacteria 9020
80 Ga0495686_0000118 3300047472 Bacteria 165897
81 Ga0496115_0013207 3300048918 Bacteria 6239
82 Ga0496116_0000030 3300048919 Bacteria 420761
83 Ga0496121_0000026 3300048924 Bacteria 450157
84 Ga0496121_0224595 3300048924 Bacteria 1320
85 Ga0496124_0285527 3300048927 Bacteria 1201
86 Ga0496125_0000035 3300048928 Bacteria 339737
87 Ga0496125_0000761 3300048928 Bacteria 52765
88 Ga0496125_0020934 3300048928 Bacteria 6119
89 Ga0501031_0047893 3300049568 Unclassified 2786
90 Ga0501032_0121487 3300049569 Unclassified 1726
91 Ga0501032_0150677 3300049569 Unclassified 1529
92 Ga0501033_0000061 3300049570 Bacteria 103115
93 Ga0501034_0002106 3300049571 Bacteria 24838
94 Ga0501036_0020121 3300049572 Bacteria 5604
95 Ga0501038_0019983 3300049574 Bacteria 6029
96 Ga0501038_0338654 3300049574 Unclassified 1173
97 Ga0501039_0243023 3300049575 Unclassified 1415
98 Ga0501043_0040239 3300049579 Unclassified 3674
99 Ga0501047_0192578 3300049581 Bacteria 1902
100 Ga0501223_000249 3300049663 Bacteria 13787
101 Ga0501223_005504 3300049663 Bacteria 2658
102 Ga0501251_004531 3300049681 Bacteria 1438
103 Ga0501241_000028 3300049758 Bacteria 58273
104 Ga0501269_000019 3300049766 Bacteria 55763
105 Ga0501044_0320823 3300049823 Unclassified 1473
106 Ga0500622_0001160 3300053156 Bacteria 21882

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300015261 Ga0182006_1000001 Ga0182006_1000001215 283
2 3300032002 Ga0307416_100000059 Ga0307416_10000005916 284
3 3300046512 Ga0495610_0000005 Ga0495610_0000005_867661_868581 286
4 iso_pu_bacteria 2821136567 2821139657 291
5 iso_pu_bacteria 2904467357 2904473591 291
6 3300049663 Ga0501223_005504 Ga0501223_005504_1609_2607 292
7 3300048924 Ga0496121_0000026 Ga0496121_0000026_47048_48010 296
8 3300005339 Ga0070660_100020684 Ga0070660_1000206844 297
9 3300025919 Ga0207657_10087680 Ga0207657_100876804 297
10 iso_pu_bacteria 2842083920 2842084415 297
11 iso_pu_bacteria 2919097161 2919099800 297
12 iso_pu_bacteria 2728369107 2729201447 298
13 3300025208 Ga0209436_109642 Ga0209436_1096423 299
14 3300025302 Ga0207426_1010320 Ga0207426_10103203 299
15 iso_pu_bacteria 2522125168 2522550492 299
16 iso_pu_bacteria 2881359912 2881363840 299
17 iso_pu_bacteria 2910245624 2910247344 299
18 iso_pu_bacteria 2977232053 2977235534 299
19 3300005535 Ga0070684_100252251 Ga0070684_1002522511 300
20 3300005564 Ga0070664_100089243 Ga0070664_1000892434 300
21 3300006358 Ga0068871_100157001 Ga0068871_1001570012 300
22 3300013102 Ga0157371_10045307 Ga0157371_100453071 300
23 3300013297 Ga0157378_10424096 Ga0157378_104240962 300
24 3300013306 Ga0163162_10046082 Ga0163162_100460826 300
25 3300014969 Ga0157376_10245820 Ga0157376_102458202 300
26 3300025945 Ga0207679_10065866 Ga0207679_100658664 300
27 3300026142 Ga0207698_10199544 Ga0207698_101995442 300
28 3300032004 Ga0307414_10001999 Ga0307414_100019992 300
29 iso_pu_bacteria 2519899754 2520881501 300
30 iso_pu_bacteria 2738541273 2738700417 300
31 iso_pu_bacteria 2738543014 2739254166 300
32 iso_pu_bacteria 2903895155 2903897373 300
33 iso_pu_bacteria 2919191525 2919193803 300
34 3300013102 Ga0157371_10143521 Ga0157371_101435212 301
35 3300015261 Ga0182006_1001751 Ga0182006_10017514 301
36 3300031911 Ga0307412_10000006 Ga0307412_10000006233 301
37 3300032004 Ga0307414_10060681 Ga0307414_100606812 301
38 3300041413 Ga0439465_0000004 Ga0439465_0000004_49415_50338 301
39 3300042006 Ga0439432_057396 Ga0439432_057396_42_965 301
40 3300046538 Ga0495609_0000003 Ga0495609_0000003_152665_153594 301
41 3300049681 Ga0501251_004531 Ga0501251_004531_448_1371 301
42 3300049766 Ga0501269_000019 Ga0501269_000019_7268_8191 301
43 3300013100 Ga0157373_10000010 Ga0157373_10000010128 302
44 3300041411 Ga0439466_0071146 Ga0439466_0071146_65_994 302
45 3300048927 Ga0496124_0285527 Ga0496124_0285527_49_963 302
46 3300049569 Ga0501032_0121487 Ga0501032_0121487_741_1667 302
47 3300049663 Ga0501223_000249 Ga0501223_000249_8744_9658 302
48 iso_pu_bacteria 2775506987 2776613991 302
49 3300003316 rootH1_10065247 rootH1_100652471 303
50 3300003322 rootL2_10042845 rootL2_100428454 303
51 3300003322 rootL2_10183118 rootL2_101831182 303
52 3300003781 Ga0055536_1000024 Ga0055536_100002472 303
53 3300003791 Ga0055530_10003260 Ga0055530_100032608 303
54 3300005289 Ga0065704_10070133 Ga0065704_10070133457 303
55 3300005289 Ga0065704_10089628 Ga0065704_100896282 303
56 3300006946 Ga0079104_1000052 Ga0079104_100005252 303
57 3300009011 Ga0105251_10033835 Ga0105251_100338353 303
58 3300013100 Ga0157373_10002664 Ga0157373_1000266415 303
59 3300013102 Ga0157371_10003517 Ga0157371_100035172 303
60 3300013104 Ga0157370_10000029 Ga0157370_1000002934 303
61 3300013104 Ga0157370_10000106 Ga0157370_1000010664 303
62 3300013105 Ga0157369_10024636 Ga0157369_100246363 303
63 3300013307 Ga0157372_10471687 Ga0157372_104716871 303
64 3300014497 Ga0182008_10037545 Ga0182008_100375452 303
65 3300014497 Ga0182008_10062606 Ga0182008_100626061 303
66 3300015261 Ga0182006_1034526 Ga0182006_10345262 303
67 3300015261 Ga0182006_1048501 Ga0182006_10485012 303
68 3300015262 Ga0182007_10009598 Ga0182007_100095985 303
69 3300025292 Ga0209676_1000008 Ga0209676_1000008199 303
70 3300025298 Ga0209050_1000055 Ga0209050_1000055213 303
71 3300027111 Ga0209281_1000210 Ga0209281_100021069 303
72 3300027471 Ga0209995_1019138 Ga0209995_10191381 303
73 3300032004 Ga0307414_10014809 Ga0307414_100148092 303
74 3300048919 Ga0496116_0000030 Ga0496116_0000030_274062_274979 303
75 3300048924 Ga0496121_0224595 Ga0496121_0224595_86_1003 303
76 iso_pu_bacteria 2840677318 2840679177 303
77 iso_pu_bacteria 2896085136 2896086988 303
78 3300005288 Ga0065714_10065160 Ga0065714_100651607 304
79 3300017792 Ga0163161_10011910 Ga0163161_100119107 304
80 3300031911 Ga0307412_10000119 Ga0307412_100001197 304
81 3300049758 Ga0501241_000028 Ga0501241_000028_49989_50999 304
82 iso_pu_bacteria 2585428095 2587866299 304
83 iso_pu_bacteria 2775506739 2775674869 304
84 3300025304 Ga0209257_1000077 Ga0209257_1000077105 305
85 3300046530 Ga0495654_0000001 Ga0495654_0000001_669705_670712 305
86 3300046558 Ga0495633_0000008 Ga0495633_0000008_101419_102426 305
87 iso_pu_bacteria 2585428115 2587942983 305
88 iso_pu_bacteria 2728369107 2729198748 305
89 3300003316 rootH1_10148649 rootH1_101486492 306
90 3300003320 rootH2_10170011 rootH2_101700115 306
91 3300003322 rootL2_10036109 rootL2_100361093 306
92 3300003323 rootH1_10007688 rootH1_1000768828 306
93 3300005289 Ga0065704_10102352 Ga0065704_101023522 306
94 3300049568 Ga0501031_0047893 Ga0501031_0047893_716_1714 306
95 3300049569 Ga0501032_0150677 Ga0501032_0150677_127_1125 306
96 3300049570 Ga0501033_0000061 Ga0501033_0000061_58418_59416 306
97 3300049571 Ga0501034_0002106 Ga0501034_0002106_23394_24392 306
98 3300049572 Ga0501036_0020121 Ga0501036_0020121_1169_2209 306
99 3300049574 Ga0501038_0019983 Ga0501038_0019983_4600_5598 306
100 3300049574 Ga0501038_0338654 Ga0501038_0338654_41_1081 306
101 3300049575 Ga0501039_0243023 Ga0501039_0243023_197_1195 306
102 3300049579 Ga0501043_0040239 Ga0501043_0040239_1364_2362 306
103 3300049581 Ga0501047_0192578 Ga0501047_0192578_215_1213 306
104 3300049823 Ga0501044_0320823 Ga0501044_0320823_362_1402 306
105 iso_pu_bacteria 2643221725 2644682953 306
106 iso_pu_bacteria 2802428842 2802654428 306
107 iso_pu_bacteria 2958458903 2958462241 306
108 iso_pu_bacteria 2977268062 2977270661 306
109 iso_pu_bacteria 8056440228 8056443988 306
110 2162886007 SwRhRL2b_contig_2879104 SwRhRL2b_0102.00000600 307
111 3300005262 Ga0065165_1002071 Ga0065165_100207110 307
112 3300006942 Ga0099824_1001974 Ga0099824_100197417 307
113 3300013102 Ga0157371_10008366 Ga0157371_1000836610 307
114 3300013104 Ga0157370_10022647 Ga0157370_100226475 307
115 3300013308 Ga0157375_10000771 Ga0157375_1000077116 307
116 3300017792 Ga0163161_10037910 Ga0163161_100379104 307
117 3300032005 Ga0307411_10001478 Ga0307411_100014785 307
118 3300042004 Ga0439445_0000039 Ga0439445_0000039_14256_15257 307
119 3300044658 Ga0466972_0082064 Ga0466972_0082064_372_1358 307
120 3300044712 Ga0453684_0006234 Ga0453684_0006234_18029_18985 307
121 3300046453 Ga0495627_001392 Ga0495627_001392_2793_3848 307
122 3300046453 Ga0495627_012329 Ga0495627_012329_2019_3020 307
123 3300046519 Ga0495632_0004920 Ga0495632_0004920_2891_3892 307
124 3300046558 Ga0495633_0001538 Ga0495633_0001538_8426_9427 307
125 3300046660 Ga0495625_0008088 Ga0495625_0008088_7050_8051 307
126 3300047472 Ga0495686_0000118 Ga0495686_0000118_60268_61269 307
127 3300048918 Ga0496115_0013207 Ga0496115_0013207_226_1275 307
128 3300048928 Ga0496125_0000035 Ga0496125_0000035_132173_133222 307
129 3300048928 Ga0496125_0000761 Ga0496125_0000761_23790_24761 307
130 3300048928 Ga0496125_0020934 Ga0496125_0020934_4613_5614 307
131 3300053156 Ga0500622_0001160 Ga0500622_0001160_6351_7301 307
132 iso_pu_bacteria 2585428187 2588233556 307
133 iso_pu_bacteria 2816332280 2817416769 307
134 iso_pu_bacteria 2881955468 2881958400 307
135 iso_pu_bacteria 2890804823 2890806120 307
136 iso_pu_bacteria 2958512119 2958515857 307
137 iso_pu_bacteria 2977243572 2977246277 307
138 iso_pu_bacteria 8055419101 8055422257 307
139 iso_pu_bacteria 8055592153 8055596206 307

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13743

Thioredoxin_5

Thioredoxin

107

297

0.98

PF01323

DSBA

DSBA-like thioredoxin domain

104

300

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
4yif-assembly3.cif.gz_F crystal structure of rv0880 0.9539 260 307
4kmf-assembly1.cif.gz_A-2 crystal structure of zalpha domain from carassius auratus pkz in complex with z-dna 0.952 257 307
1u2w-assembly1.cif.gz_A crystal structure of the staphylococcus aureus pi258 cadc 0.9415 257 306
3f72-assembly2.cif.gz_C crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9397 257 306
3f72-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9327 257 306
ID Description Score Start End Superfamily
4kmfA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.952 257 307 1.10.10.10
af_P9WKV1_40_102_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9434 264 296 1.10.10.10
3f72B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9327 257 306 1.10.10.10
af_O53921_2_101_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9309 263 306 1.10.10.10
4lb5A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9299 257 307 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2W6SHH9-F1-model_v4 Dithiol-disulfide isomerase 0.9932 51 307 GO:0016853
AF-A0A2W6SHH9-F1-model_v4 Dithiol-disulfide isomerase 0.9856 51 307 GO:0016853
AF-K1Z1H1-F1-model_v4 DSBA-like thioredoxin domain-containing protein 0.9761 62 241
AF-A0A0M3CEE5-F1-model_v4 deleted 0.9755 112 306
AF-A0A2E4YQK4-F1-model_v4 DSBA-like thioredoxin domain-containing protein 0.9717 40 306 GO:0004497

Feature Viewer

pLDDT pTM Quality
86.93 0.83 High
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Predicted Structure (AlphaFold2)

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