F174788

General Info

Members Datasets Scaffolds Average Seq Length
138 106 128 253

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2894023352|2894024572
Length 253
Sequence RTRTTLSLKLIAQAALALALLPAAHAGEVAVAVAANFTAPMQKLGAMFEKQTGNKVVISSGATGKFYAQIVNGAPYDVLLAADDTTPEKLEKEGKAVKGTRYTYAIGQLVLWSPRDNYVDSEGKVLNTQFDHIAIANPKLAPYGAAAMEALDRLKLTETIKPRVVTGENIGQTYQFVATGNAPLGFVALSQVMVDGKVSKGSYWIVPESMHEPIRQDAVLLNKGEANDTAKELLKYLRSDEARAVIKTYGYGF

Samples

Sample ID Description Type Environment
1 2547132374 Acidovorax radicis N35 Isolate Unclassified
2 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
3 2643221570 Acidovorax sp. Root568 Isolate Unclassified
4 2643221596 Acidovorax sp. Root70 Isolate Unclassified
5 2643221652 Acidovorax sp. Root402 Isolate Unclassified
6 2823421272 Pseudomonas mendocina S5.2 Isolate Rhizoplane
7 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
8 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
9 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
10 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
18 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
19 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
20 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
21 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
22 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
23 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
24 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
25 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
26 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
34 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
35 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
36 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
37 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
38 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
39 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
40 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
41 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
42 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
43 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
44 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
45 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
47 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
48 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
49 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
50 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
51 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
52 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
53 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
54 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
55 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
56 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
57 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
58 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
59 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
60 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
61 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
62 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
63 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
64 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
65 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
66 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
67 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
68 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
69 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
72 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
73 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
81 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
82 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
83 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
84 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
85 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
86 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
87 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
88 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
89 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
90 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
91 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
92 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
93 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
94 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
95 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
96 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
100 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
101 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
102 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
105 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
106 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.3
Metatranscriptomes 1.45
Isolates 7.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.62
Nodule 0.72
Rhizoplane 5.07
Rhizosphere 85.51
Stem 0
Stem Tuber 0
Unclassified 5.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10041981 3300003320 Bacteria 21862
2 Ga0070658_10460602 3300005327 Bacteria 1096
3 Ga0070666_10017076 3300005335 Bacteria 4649
4 Ga0070667_100077750 3300005367 Bacteria 2834
5 Ga0070672_100233689 3300005543 Bacteria 1545
6 Ga0070664_100197309 3300005564 Bacteria 1794
7 Ga0075368_10010545 3300006042 Bacteria 3343
8 Ga0075362_10035477 3300006177 Bacteria 2177
9 Ga0075366_10028750 3300006195 Bacteria 3264
10 Ga0105248_10025001 3300009177 Bacteria 6638
11 Ga0105249_10529255 3300009553 Bacteria 1227
12 Ga0157373_10004875 3300013100 Bacteria 10096
13 Ga0163162_10001682 3300013306 Bacteria 20745
14 Ga0157372_10252058 3300013307 Bacteria 2049
15 Ga0157375_10013428 3300013308 Bacteria 7288
16 Ga0207680_10009833 3300025903 Bacteria 4762
17 Ga0207705_10494585 3300025909 Bacteria 950
18 Ga0207691_10157900 3300025940 Bacteria 1991
19 Ga0207711_10104100 3300025941 Bacteria 2514
20 Ga0207679_10117309 3300025945 Bacteria 2112
21 Ga0207712_10349202 3300025961 Bacteria 1229
22 Ga0207658_10262142 3300025986 Bacteria 1473
23 Ga0316177_1210695 3300030731 Bacteria 1240
24 Ga0316579_10087271 3300031691 Bacteria 1488
25 Ga0316576_10042217 3300031727 Bacteria 3286
26 Ga0316576_10078779 3300031727 Bacteria 2442
27 Ga0316576_10083578 3300031727 Bacteria 2372
28 Ga0316578_10003116 3300031728 Bacteria 7489
29 Ga0316578_10010120 3300031728 Bacteria 4882
30 Ga0316578_10041243 3300031728 Bacteria 2672
31 Ga0316578_10171790 3300031728 Bacteria 1306
32 Ga0316577_10043702 3300031733 Bacteria 2507
33 Ga0316577_10093061 3300031733 Bacteria 1687
34 Ga0307416_100617895 3300032002 Bacteria 1165
35 Ga0307414_10104323 3300032004 Bacteria 2141
36 Ga0307411_10075686 3300032005 Bacteria 2299
37 Ga0316583_10011797 3300032133 Bacteria 3153
38 Ga0316585_10008735 3300032137 Bacteria 2943
39 Ga0316585_10119696 3300032137 Bacteria 866
40 Ga0316580_10017886 3300032139 Bacteria 2180
41 Ga0316580_10029788 3300032139 Bacteria 1689
42 Ga0316580_10052719 3300032139 Bacteria 1252
43 Ga0316593_10069506 3300032168 Bacteria 1216
44 Ga0316596_1062639 3300033541 Bacteria 993
45 Ga0316574_0014873 3300035398 Bacteria 4505
46 Ga0316574_0030855 3300035398 Bacteria 3248
47 Ga0316574_0204143 3300035398 Bacteria 1269
48 Ga0316582_0037453 3300036647 Bacteria 3007
49 Ga0316582_0263901 3300036647 Bacteria 1181
50 Ga0316584_0001406 3300036712 Bacteria 14382
51 Ga0316584_0006333 3300036712 Bacteria 8017
52 Ga0316584_0128524 3300036712 Bacteria 1892
53 Ga0395899_0023880 3300037312 Bacteria 4626
54 Ga0395899_0169334 3300037312 Bacteria 1539
55 Ga0395900_0015172 3300037418 Bacteria 7857
56 Ga0395900_0321792 3300037418 Bacteria 1527
57 Ga0395898_0005613 3300037466 Bacteria 13525
58 Ga0395905_0000042 3300037471 Bacteria 247894
59 Ga0395905_0000353 3300037471 Bacteria 65228
60 Ga0395905_0033425 3300037471 Bacteria 4831
61 Ga0395905_0295965 3300037471 Bacteria 1505
62 Ga0439461_0005022 3300041410 Bacteria 2237
63 Ga0439466_0012402 3300041411 Bacteria 3141
64 Ga0439465_0001697 3300041413 Bacteria 7192
65 Ga0439431_0000756 3300041997 Bacteria 6989
66 Ga0439433_0000784 3300041999 Bacteria 6273
67 Ga0439442_015337 3300042002 Bacteria 1578
68 Ga0439445_0000528 3300042004 Bacteria 7744
69 Ga0439445_0040737 3300042004 Bacteria 1233
70 Ga0439432_003908 3300042006 Bacteria 5484
71 Ga0439449_0000727 3300042007 Bacteria 12633
72 Ga0439449_0003157 3300042007 Bacteria 6413
73 Ga0439457_027228 3300042014 Bacteria 1265
74 Ga0439446_0006169 3300042156 Bacteria 3115
75 Ga0450909_001269 3300042185 Bacteria 3507
76 Ga0439434_0013529 3300042435 Bacteria 2423
77 Ga0451577_0059218 3300042876 Bacteria 3415
78 Ga0451577_0127898 3300042876 Bacteria 2277
79 Ga0451577_0255521 3300042876 Bacteria 1586
80 Ga0466969_0026829 3300044656 Bacteria 2952
81 Ga0466969_0104747 3300044656 Bacteria 1329
82 Ga0466972_0012292 3300044658 Bacteria 4303
83 Ga0453683_0071010 3300044673 Bacteria 2178
84 Ga0466966_0002649 3300044684 Bacteria 11727
85 Ga0466961_0004698 3300044693 Bacteria 8587
86 Ga0453684_0483325 3300044712 Bacteria 1374
87 Ga0453684_0600490 3300044712 Bacteria 1206
88 Ga0466971_0155763 3300044719 Bacteria 1068
89 Ga0466959_0090811 3300045049 Bacteria 2193
90 Ga0451576_0000029 3300045051 Bacteria 404449
91 Ga0451576_0023425 3300045051 Bacteria 6683
92 Ga0451576_0047515 3300045051 Bacteria 4512
93 Ga0451576_0661173 3300045051 Bacteria 1098
94 Ga0495592_0200033 3300046454 Bacteria 1349
95 Ga0495638_0002100 3300046460 Bacteria 16872
96 Ga0495605_0001936 3300046474 Bacteria 13168
97 Ga0495664_0103342 3300046477 Bacteria 1717
98 Ga0495596_0011599 3300046500 Bacteria 3795
99 Ga0495596_0090526 3300046500 Bacteria 1187
100 Ga0495628_0181848 3300046516 Bacteria 1590
101 Ga0495644_0047098 3300046523 Bacteria 1620
102 Ga0495642_0021136 3300046528 Bacteria 2558
103 Ga0495642_0045545 3300046528 Bacteria 1793
104 Ga0495652_0106361 3300046529 Bacteria 2266
105 Ga0495586_0211839 3300046535 Bacteria 1100
106 Ga0495597_0127707 3300046542 Bacteria 1056
107 Ga0495656_0016514 3300046615 Bacteria 2802
108 Ga0495611_0070114 3300046648 Bacteria 1602
109 Ga0495625_0073951 3300046660 Bacteria 2388
110 Ga0495670_0013888 3300046691 Bacteria 3960
111 Ga0495649_0014839 3300046694 Bacteria 4451
112 Ga0495589_0014298 3300046794 Bacteria 4089
113 Ga0495687_000018 3300047443 Bacteria 342973
114 Ga0495687_016072 3300047443 Bacteria 3776
115 Ga0495677_0018296 3300047445 Bacteria 2540
116 Ga0495681_0038395 3300047470 Bacteria 2348
117 Ga0495686_0127729 3300047472 Bacteria 1510
118 Ga0496102_0013898 3300048905 Bacteria 6984
119 Ga0496102_0018843 3300048905 Bacteria 6071
120 Ga0496104_0185354 3300048907 Bacteria 1992
121 Ga0496105_0172441 3300048908 Bacteria 1773
122 Ga0496106_0051734 3300048909 Bacteria 3098
123 Ga0496111_0114161 3300048914 Bacteria 1991
124 Ga0501034_0331185 3300049571 Bacteria 1454
125 Ga0501037_0228633 3300049573 Bacteria 1306
126 Ga0501209_000863 3300049656 Bacteria 3942
127 nmdc:mga0k408_16863_c1 3300050493 Bacteria 4061
128 nmdc:mga04h51_17151_c1 3300050495 Bacteria 2113

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0059218 Ga0451577_0059218_2113_2850 217
2 3300044673 Ga0453683_0071010 Ga0453683_0071010_1273_2010 217
3 3300045051 Ga0451576_0047515 Ga0451576_0047515_1351_2088 217
4 3300044656 Ga0466969_0104747 Ga0466969_0104747_637_1311 218
5 3300048914 Ga0496111_0114161 Ga0496111_0114161_1306_1980 218
6 3300006042 Ga0075368_10010545 Ga0075368_100105453 220
7 3300050495 nmdc:mga04h51_17151_c1 nmdc:mga04h51_17151_c1_731_1498 220
8 3300046528 Ga0495642_0045545 Ga0495642_0045545_295_1020 235
9 3300048905 Ga0496102_0013898 Ga0496102_0013898_4818_5549 237
10 3300046454 Ga0495592_0200033 Ga0495592_0200033_392_1126 238
11 3300046477 Ga0495664_0103342 Ga0495664_0103342_406_1140 238
12 3300046516 Ga0495628_0181848 Ga0495628_0181848_245_979 238
13 3300046529 Ga0495652_0106361 Ga0495652_0106361_305_1039 238
14 3300037471 Ga0395905_0033425 Ga0395905_0033425_297_1073 239
15 3300037471 Ga0395905_0000042 Ga0395905_0000042_17819_18559 240
16 3300037471 Ga0395905_0000353 Ga0395905_0000353_55272_56012 240
17 3300046615 Ga0495656_0016514 Ga0495656_0016514_313_1053 240
18 iso_pu_bacteria 2823421272 2823421564 240
19 3300006177 Ga0075362_10035477 Ga0075362_100354772 241
20 3300006195 Ga0075366_10028750 Ga0075366_100287503 241
21 3300009553 Ga0105249_10529255 Ga0105249_105292552 241
22 3300025961 Ga0207712_10349202 Ga0207712_103492021 241
23 3300032005 Ga0307411_10075686 Ga0307411_100756863 241
24 3300037418 Ga0395900_0321792 Ga0395900_0321792_253_996 241
25 3300037471 Ga0395905_0295965 Ga0395905_0295965_689_1432 241
26 3300047445 Ga0495677_0018296 Ga0495677_0018296_559_1302 241
27 3300050493 nmdc:mga0k408_16863_c1 nmdc:mga0k408_16863_c1_3283_4026 241
28 iso_pu_bacteria 2574179768 2574431220 241
29 iso_pu_bacteria 2881412998 2881415307 241
30 iso_pu_bacteria 2932422444 2932426470 241
31 3300030731 Ga0316177_1210695 Ga0316177_12106951 242
32 3300037312 Ga0395899_0169334 Ga0395899_0169334_753_1517 242
33 iso_pu_bacteria 2643221570 2643865835 242
34 iso_pu_bacteria 2643221596 2643993129 242
35 iso_pu_bacteria 2643221652 2644294288 242
36 3300042876 Ga0451577_0127898 Ga0451577_0127898_367_1131 243
37 3300044658 Ga0466972_0012292 Ga0466972_0012292_420_1169 243
38 3300044712 Ga0453684_0483325 Ga0453684_0483325_488_1252 243
39 3300045051 Ga0451576_0023425 Ga0451576_0023425_2211_2969 243
40 iso_pu_bacteria 2885192300 2885195336 243
41 3300005327 Ga0070658_10460602 Ga0070658_104606022 244
42 3300005564 Ga0070664_100197309 Ga0070664_1001973092 244
43 3300025909 Ga0207705_10494585 Ga0207705_104945851 244
44 3300025945 Ga0207679_10117309 Ga0207679_101173092 244
45 3300032137 Ga0316585_10008735 Ga0316585_100087352 244
46 3300032139 Ga0316580_10017886 Ga0316580_100178862 244
47 3300032168 Ga0316593_10069506 Ga0316593_100695062 244
48 3300044712 Ga0453684_0600490 Ga0453684_0600490_440_1192 244
49 3300044719 Ga0466971_0155763 Ga0466971_0155763_273_1040 244
50 3300045051 Ga0451576_0661173 Ga0451576_0661173_21_773 244
51 3300047443 Ga0495687_000018 Ga0495687_000018_28179_28931 244
52 3300047472 Ga0495686_0127729 Ga0495686_0127729_408_1160 244
53 3300005335 Ga0070666_10017076 Ga0070666_100170763 245
54 3300005367 Ga0070667_100077750 Ga0070667_1000777502 245
55 3300005543 Ga0070672_100233689 Ga0070672_1002336891 245
56 3300009177 Ga0105248_10025001 Ga0105248_100250016 245
57 3300013306 Ga0163162_10001682 Ga0163162_100016822 245
58 3300013308 Ga0157375_10013428 Ga0157375_100134288 245
59 3300025903 Ga0207680_10009833 Ga0207680_100098333 245
60 3300025940 Ga0207691_10157900 Ga0207691_101579001 245
61 3300025941 Ga0207711_10104100 Ga0207711_101041002 245
62 3300025986 Ga0207658_10262142 Ga0207658_102621422 245
63 3300031691 Ga0316579_10087271 Ga0316579_100872712 245
64 3300031727 Ga0316576_10042217 Ga0316576_100422172 245
65 3300031727 Ga0316576_10078779 Ga0316576_100787793 245
66 3300031727 Ga0316576_10083578 Ga0316576_100835783 245
67 3300031728 Ga0316578_10003116 Ga0316578_100031166 245
68 3300031728 Ga0316578_10010120 Ga0316578_100101205 245
69 3300031728 Ga0316578_10041243 Ga0316578_100412432 245
70 3300031728 Ga0316578_10171790 Ga0316578_101717902 245
71 3300031733 Ga0316577_10043702 Ga0316577_100437023 245
72 3300031733 Ga0316577_10093061 Ga0316577_100930612 245
73 3300032004 Ga0307414_10104323 Ga0307414_101043232 245
74 3300032133 Ga0316583_10011797 Ga0316583_100117971 245
75 3300032137 Ga0316585_10119696 Ga0316585_101196961 245
76 3300032139 Ga0316580_10029788 Ga0316580_100297881 245
77 3300032139 Ga0316580_10052719 Ga0316580_100527191 245
78 3300033541 Ga0316596_1062639 Ga0316596_10626391 245
79 3300035398 Ga0316574_0014873 Ga0316574_0014873_658_1419 245
80 3300035398 Ga0316574_0030855 Ga0316574_0030855_329_1084 245
81 3300035398 Ga0316574_0204143 Ga0316574_0204143_104_862 245
82 3300036647 Ga0316582_0037453 Ga0316582_0037453_642_1397 245
83 3300036647 Ga0316582_0263901 Ga0316582_0263901_310_1068 245
84 3300036712 Ga0316584_0001406 Ga0316584_0001406_10898_11656 245
85 3300036712 Ga0316584_0006333 Ga0316584_0006333_4900_5655 245
86 3300036712 Ga0316584_0128524 Ga0316584_0128524_256_1017 245
87 3300042876 Ga0451577_0255521 Ga0451577_0255521_324_1079 245
88 3300044656 Ga0466969_0026829 Ga0466969_0026829_1666_2436 245
89 3300044684 Ga0466966_0002649 Ga0466966_0002649_8393_9163 245
90 3300044693 Ga0466961_0004698 Ga0466961_0004698_4449_5219 245
91 3300045049 Ga0466959_0090811 Ga0466959_0090811_107_877 245
92 3300046460 Ga0495638_0002100 Ga0495638_0002100_280_1086 245
93 3300046474 Ga0495605_0001936 Ga0495605_0001936_7086_7892 245
94 3300046500 Ga0495596_0011599 Ga0495596_0011599_2128_2889 245
95 3300046500 Ga0495596_0090526 Ga0495596_0090526_291_1097 245
96 3300046523 Ga0495644_0047098 Ga0495644_0047098_746_1552 245
97 3300046528 Ga0495642_0021136 Ga0495642_0021136_405_1211 245
98 3300046535 Ga0495586_0211839 Ga0495586_0211839_184_939 245
99 3300046542 Ga0495597_0127707 Ga0495597_0127707_190_996 245
100 3300046648 Ga0495611_0070114 Ga0495611_0070114_598_1404 245
101 3300046660 Ga0495625_0073951 Ga0495625_0073951_362_1168 245
102 3300046691 Ga0495670_0013888 Ga0495670_0013888_3061_3867 245
103 3300046694 Ga0495649_0014839 Ga0495649_0014839_3403_4164 245
104 3300046794 Ga0495589_0014298 Ga0495589_0014298_2679_3485 245
105 3300047443 Ga0495687_016072 Ga0495687_016072_390_1166 245
106 3300047470 Ga0495681_0038395 Ga0495681_0038395_241_1002 245
107 3300048907 Ga0496104_0185354 Ga0496104_0185354_642_1448 245
108 3300048908 Ga0496105_0172441 Ga0496105_0172441_919_1725 245
109 3300048909 Ga0496106_0051734 Ga0496106_0051734_1048_1854 245
110 3300049571 Ga0501034_0331185 Ga0501034_0331185_671_1432 245
111 3300049573 Ga0501037_0228633 Ga0501037_0228633_135_899 245
112 iso_pu_bacteria 2547132374 2548497908 245
113 3300013100 Ga0157373_10004875 Ga0157373_100048753 246
114 3300013307 Ga0157372_10252058 Ga0157372_102520583 246
115 3300032002 Ga0307416_100617895 Ga0307416_1006178951 246
116 3300048905 Ga0496102_0018843 Ga0496102_0018843_4512_5372 246
117 3300041410 Ga0439461_0005022 Ga0439461_0005022_1257_2018 247
118 3300041411 Ga0439466_0012402 Ga0439466_0012402_2006_2767 247
119 3300041413 Ga0439465_0001697 Ga0439465_0001697_3254_4015 247
120 3300041997 Ga0439431_0000756 Ga0439431_0000756_4289_5050 247
121 3300041999 Ga0439433_0000784 Ga0439433_0000784_4876_5637 247
122 3300042002 Ga0439442_015337 Ga0439442_015337_277_1038 247
123 3300042004 Ga0439445_0000528 Ga0439445_0000528_6494_7255 247
124 3300042004 Ga0439445_0040737 Ga0439445_0040737_32_793 247
125 3300042006 Ga0439432_003908 Ga0439432_003908_580_1341 247
126 3300042007 Ga0439449_0000727 Ga0439449_0000727_9658_10419 247
127 3300042007 Ga0439449_0003157 Ga0439449_0003157_4274_5035 247
128 3300042014 Ga0439457_027228 Ga0439457_027228_184_945 247
129 3300042156 Ga0439446_0006169 Ga0439446_0006169_864_1625 247
130 3300042185 Ga0450909_001269 Ga0450909_001269_984_1745 247
131 3300042435 Ga0439434_0013529 Ga0439434_0013529_301_1062 247
132 iso_pu_bacteria 2894023352 2894024572 247
133 3300037312 Ga0395899_0023880 Ga0395899_0023880_1757_2617 248
134 3300037418 Ga0395900_0015172 Ga0395900_0015172_1135_1995 248
135 3300037466 Ga0395898_0005613 Ga0395898_0005613_736_1596 248
136 3300045051 Ga0451576_0000029 Ga0451576_0000029_218177_218965 248
137 3300049656 Ga0501209_000863 Ga0501209_000863_2697_3470 248
138 3300003320 rootH2_10041981 rootH2_100419813 257

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13531

SBP_bac_11

Bacterial extracellular solute-binding protein

29

252

0.99

PF01547

SBP_bac_1

Bacterial extracellular solute-binding protein

34

244

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7t50-assembly2.cif.gz_B crystal structure of the molybdate-binding periplasmic protein moda from the bacteria pseudomonsa aeruginosa in chromate-bound form 0.8779 36 256
1atg-assembly1.cif.gz_A azotobacter vinelandii periplasmic molybdate-binding protein 0.855 36 257
7t50-assembly2.cif.gz_B crystal structure of the molybdate-binding periplasmic protein moda from the bacteria pseudomonsa aeruginosa in chromate-bound form 0.8531 36 256
4kd5-assembly1.cif.gz_C substrate binding domain of putative molybdenum abc transporter from clostridium difficile 0.8503 36 257
6nio-assembly1.cif.gz_A crystal structure of the molybdate transporter periplasmic protein moda from yersinia pestis 0.8352 34 257
ID Description Score Start End Superfamily
af_Q2FVX4_42_108_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9578 36 100 3.40.190.10
1atgA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9548 36 257 3.40.190.10
2h5yB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9488 34 112 3.40.190.10
af_P9WGU3_42_110_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9462 38 101 3.40.190.10
1atgA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9319 36 257 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A381V1T0-F1-model_v4 Molybdate ABC transporter substrate-binding protein 0.9909 34 109
AF-A0A7T4QXI0-F1-model_v4 Molybdate ABC transporter substrate-binding protein 0.9387 39 256 GO:0015689
GO:0030973
GO:0046872
AF-A0A7C6E9X2-F1-model_v4 Molybdate ABC transporter substrate-binding protein 0.9314 45 255 GO:0015689
GO:0030973
GO:0046872
AF-A0A2E5YIN4-F1-model_v4 Molybdate ABC transporter substrate-binding protein 0.9166 55 257 GO:0015689
GO:0030973
AF-A0A7C6E9X2-F1-model_v4 Molybdate ABC transporter substrate-binding protein 0.9065 45 255 GO:0015689
GO:0030973
GO:0046872

Feature Viewer

pLDDT pTM Quality
86.44 0.79 High
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Predicted Structure (AlphaFold2)

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