F174498

General Info

Members Datasets Scaffolds Average Seq Length
138 36 276 358

Family's Representative Sequence

Representative Sequence 3300049591|Ga0501075_0134791|Ga0501075_0134791_176_1369
Length 397
Sequence MAKVLMKGNEALGEAAIRAGCVHFFGYPITPQTEIPEYLVKRLPEVGGTFVQAESELAAINMVYGAAGVGVKCLTSSSSPGISLMAEGMSYLAACELPCVVVNIMRAGPGLGGILPSQSDYLQATRGHGHGDYRLIVLAPASVQEAVDLMIRAFELAEKYRTPVMLCADGMIGQMMEPVEFAGNGRGAPLGDNDWALTGRRNRPRRVVNSLYLAPEQLHQHNVHLQQKYAEIAAHEQRWELCHADQRYDLLLAAFGTMARICRTAIDEVRKDGLRVGLFRPITLSPFPFGPCRAAMDAMADDGRVLTVEMNMGQMVTDVKFAAEGTREVAFYGTAGGVIPSPDMVAATIREMLLSSRRLWAGTGLCVEAQGDGVPCPTVNGECESCGREQSAAGMSG

Samples

Sample ID Description Type Environment
1 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
2 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
3 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
4 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
5 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
6 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
7 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
8 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
9 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
10 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
11 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
12 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
13 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
14 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
19 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
20 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
21 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
22 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
23 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
24 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
25 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
26 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
27 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
28 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
29 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
30 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
31 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
32 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
33 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
34 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
35 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
36 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.75
Metatranscriptomes 7.25
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.72
Rhizosphere 76.81
Stem 0
Stem Tuber 0
Unclassified 4.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501075_0134791 3300049591 Bacteria 1881
2 Ga0157376_10067002 3300014969 Bacteria 3036
3 Ga0265323_10010360 3300028653 Bacteria 3780
4 Ga0265322_10008133 3300028654 Bacteria 3057
5 Ga0265316_10000021 3300031344 Bacteria 185946
6 Ga0265316_10000146 3300031344 Bacteria 77550
7 Ga0265316_10006521 3300031344 Bacteria 11131
8 Ga0316575_10000555 3300031665 Bacteria 10919
9 Ga0316575_10000938 3300031665 Bacteria 8952
10 Ga0316575_10007379 3300031665 Bacteria 3979
11 Ga0316579_10000773 3300031691 Bacteria 10940
12 Ga0316579_10053743 3300031691 Bacteria 1887
13 Ga0316579_10093748 3300031691 Bacteria 1435
14 Ga0316576_10000360 3300031727 Bacteria 20486
15 Ga0316576_10000516 3300031727 Bacteria 18113
16 Ga0316576_10000725 3300031727 Bacteria 16325
17 Ga0316576_10000814 3300031727 Bacteria 15773
18 Ga0316576_10001764 3300031727 Bacteria 11947
19 Ga0316576_10002030 3300031727 Bacteria 11350
20 Ga0316576_10006593 3300031727 Bacteria 7247
21 Ga0316576_10007435 3300031727 Bacteria 6900
22 Ga0316576_10009446 3300031727 Bacteria 6294
23 Ga0316576_10036201 3300031727 Bacteria 3528
24 Ga0316576_10036703 3300031727 Bacteria 3504
25 Ga0316576_10050564 3300031727 Bacteria 3023
26 Ga0316576_10054816 3300031727 Bacteria 2908
27 Ga0316576_10082085 3300031727 Bacteria 2393
28 Ga0316576_10157971 3300031727 Unclassified 1709
29 Ga0316576_10159631 3300031727 Bacteria 1700
30 Ga0316576_10195171 3300031727 Bacteria 1526
31 Ga0316578_10028758 3300031728 Bacteria 3150
32 Ga0316578_10043927 3300031728 Bacteria 2597
33 Ga0316578_10047416 3300031728 Bacteria 2507
34 Ga0316578_10049005 3300031728 Bacteria 2468
35 Ga0316578_10070753 3300031728 Bacteria 2065
36 Ga0316578_10073783 3300031728 Bacteria 2022
37 Ga0316578_10083037 3300031728 Bacteria 1908
38 Ga0316577_10000020 3300031733 Bacteria 35147
39 Ga0316577_10006915 3300031733 Bacteria 6027
40 Ga0316577_10011998 3300031733 Bacteria 4711
41 Ga0316577_10019283 3300031733 Bacteria 3773
42 Ga0316577_10034512 3300031733 Bacteria 2826
43 Ga0316577_10133301 3300031733 Bacteria 1398
44 Ga0316583_10001818 3300032133 Bacteria 7256
45 Ga0316583_10001850 3300032133 Bacteria 7203
46 Ga0316583_10002837 3300032133 Bacteria 6072
47 Ga0316583_10003932 3300032133 Bacteria 5279
48 Ga0316585_10000024 3300032137 Bacteria 22379
49 Ga0316585_10012108 3300032137 Bacteria 2551
50 Ga0316580_10000548 3300032139 Bacteria 8752
51 Ga0316580_10006460 3300032139 Bacteria 3463
52 Ga0316580_10006786 3300032139 Unclassified 3387
53 Ga0316593_10046667 3300032168 Bacteria 1455
54 Ga0316593_10048926 3300032168 Bacteria 1424
55 Ga0316593_10053359 3300032168 Bacteria 1370
56 Ga0316592_1006849 3300033524 Bacteria 2207
57 Ga0316588_1021398 3300033528 Bacteria 1471
58 Ga0316596_1009295 3300033541 Bacteria 2357
59 Ga0316596_1013189 3300033541 Bacteria 2039
60 Ga0316596_1017054 3300033541 Bacteria 1823
61 Ga0316596_1019933 3300033541 Bacteria 1704
62 Ga0316596_1023410 3300033541 Bacteria 1583
63 Ga0316574_0000110 3300035398 Bacteria 24477
64 Ga0316574_0003635 3300035398 Bacteria 7975
65 Ga0316574_0008194 3300035398 Bacteria 5787
66 Ga0316574_0012288 3300035398 Bacteria 4896
67 Ga0316574_0059544 3300035398 Bacteria 2395
68 Ga0316574_0182361 3300035398 Bacteria 1350
69 Ga0316582_0000077 3300036647 Bacteria 25182
70 Ga0316582_0000121 3300036647 Bacteria 22350
71 Ga0316582_0003041 3300036647 Bacteria 8092
72 Ga0316582_0010903 3300036647 Bacteria 5002
73 Ga0316582_0012536 3300036647 Bacteria 4736
74 Ga0316582_0018515 3300036647 Bacteria 4055
75 Ga0316582_0028241 3300036647 Bacteria 3397
76 Ga0316582_0047600 3300036647 Bacteria 2708
77 Ga0316582_0105814 3300036647 Bacteria 1868
78 Ga0316582_0163699 3300036647 Bacteria 1507
79 Ga0316584_0000763 3300036712 Bacteria 17957
80 Ga0316584_0001037 3300036712 Bacteria 16129
81 Ga0316584_0001680 3300036712 Bacteria 13527
82 Ga0316584_0002460 3300036712 Bacteria 11719
83 Ga0316584_0009733 3300036712 Bacteria 6688
84 Ga0316584_0015953 3300036712 Bacteria 5381
85 Ga0316584_0034422 3300036712 Bacteria 3755
86 Ga0316584_0055341 3300036712 Bacteria 2970
87 Ga0316584_0070104 3300036712 Bacteria 2628
88 Ga0316584_0117732 3300036712 Bacteria 1987
89 Ga0316584_0135583 3300036712 Unclassified 1837
90 Ga0316584_0157892 3300036712 Bacteria 1686
91 Ga0316584_0243970 3300036712 Bacteria 1314
92 Ga0316581_0004098 3300037588 Unclassified 3685
93 Ga0316581_0035684 3300037588 Bacteria 1507
94 Ga0400484_24180 3300038725 Bacteria 2631
95 Ga0400484_28197 3300038725 Bacteria 19326
96 Ga0400484_36831 3300038725 Bacteria 14260
97 Ga0400490_06651 3300038726 Bacteria 44225
98 Ga0400490_19578 3300038726 Bacteria 1773
99 Ga0400490_33975 3300038726 Bacteria 4023
100 Ga0400490_35087 3300038726 Bacteria 6779
101 Ga0400490_58021 3300038726 Bacteria 28721
102 Ga0400485_09394 3300038735 Bacteria 31894
103 Ga0400485_12791 3300038735 Bacteria 25460
104 Ga0400485_18422 3300038735 Bacteria 32961
105 Ga0400485_18722 3300038735 Bacteria 12083
106 Ga0400488_20310 3300038741 Bacteria 6096
107 Ga0400486_07564 3300038742 Bacteria 6573
108 Ga0400486_18425 3300038742 Bacteria 17295
109 Ga0400486_18753 3300038742 Bacteria 46597
110 Ga0400486_19779 3300038742 Bacteria 39072
111 Ga0400483_061917 3300039062 Bacteria 4794
112 Ga0400483_097471 3300039062 Bacteria 9551
113 Ga0400483_176499 3300039062 Bacteria 8033
114 Ga0400483_195000 3300039062 Bacteria 103610
115 Ga0400483_195564 3300039062 Bacteria 8910
116 Ga0400489_18127 3300039093 Bacteria 2091
117 Ga0400489_19840 3300039093 Bacteria 22846
118 Ga0400489_62086 3300039093 Bacteria 14747
119 Ga0400489_77515 3300039093 Bacteria 15547
120 Ga0400489_78220 3300039093 Bacteria 1582
121 Ga0400489_93966 3300039093 Bacteria 37739
122 Ga0400487_01631 3300039110 Bacteria 32665
123 Ga0400487_24787 3300039110 Bacteria 2420
124 Ga0400487_64491 3300039110 Unclassified 3138
125 Ga0451795_1091601 3300041456 Bacteria 2111
126 Ga0451577_0053781 3300042876 Bacteria 3594
127 Ga0453683_0016017 3300044673 Unclassified 4844
128 Ga0453683_0128581 3300044673 Bacteria 1596
129 Ga0453684_0001030 3300044712 Bacteria 89069
130 Ga0453684_0001369 3300044712 Bacteria 70779
131 Ga0453684_0008196 3300044712 Bacteria 18843
132 Ga0453684_0016180 3300044712 Bacteria 11693
133 Ga0453684_0065127 3300044712 Bacteria 4649
134 Ga0453684_0089354 3300044712 Bacteria 3811
135 Ga0453684_0394197 3300044712 Bacteria 1552
136 Ga0451576_0234899 3300045051 Bacteria 1915
137 Ga0495628_0082629 3300046516 Bacteria 2495
138 Ga0495684_0148431 3300047471 Bacteria 1754
139 Ga0501075_0134791
140 Ga0157376_10067002
141 Ga0265323_10010360
142 Ga0265322_10008133
143 Ga0265316_10000021
144 Ga0265316_10000146
145 Ga0265316_10006521
146 Ga0316575_10000555
147 Ga0316575_10000938
148 Ga0316575_10007379
149 Ga0316579_10000773
150 Ga0316579_10053743
151 Ga0316579_10093748
152 Ga0316576_10000360
153 Ga0316576_10000516
154 Ga0316576_10000725
155 Ga0316576_10000814
156 Ga0316576_10001764
157 Ga0316576_10002030
158 Ga0316576_10006593
159 Ga0316576_10007435
160 Ga0316576_10009446
161 Ga0316576_10036201
162 Ga0316576_10036703
163 Ga0316576_10050564
164 Ga0316576_10054816
165 Ga0316576_10082085
166 Ga0316576_10157971
167 Ga0316576_10159631
168 Ga0316576_10195171
169 Ga0316578_10028758
170 Ga0316578_10043927
171 Ga0316578_10047416
172 Ga0316578_10049005
173 Ga0316578_10070753
174 Ga0316578_10073783
175 Ga0316578_10083037
176 Ga0316577_10000020
177 Ga0316577_10006915
178 Ga0316577_10011998
179 Ga0316577_10019283
180 Ga0316577_10034512
181 Ga0316577_10133301
182 Ga0316583_10001818
183 Ga0316583_10001850
184 Ga0316583_10002837
185 Ga0316583_10003932
186 Ga0316585_10000024
187 Ga0316585_10012108
188 Ga0316580_10000548
189 Ga0316580_10006460
190 Ga0316580_10006786
191 Ga0316593_10046667
192 Ga0316593_10048926
193 Ga0316593_10053359
194 Ga0316592_1006849
195 Ga0316588_1021398
196 Ga0316596_1009295
197 Ga0316596_1013189
198 Ga0316596_1017054
199 Ga0316596_1019933
200 Ga0316596_1023410
201 Ga0316574_0000110
202 Ga0316574_0003635
203 Ga0316574_0008194
204 Ga0316574_0012288
205 Ga0316574_0059544
206 Ga0316574_0182361
207 Ga0316582_0000077
208 Ga0316582_0000121
209 Ga0316582_0003041
210 Ga0316582_0010903
211 Ga0316582_0012536
212 Ga0316582_0018515
213 Ga0316582_0028241
214 Ga0316582_0047600
215 Ga0316582_0105814
216 Ga0316582_0163699
217 Ga0316584_0000763
218 Ga0316584_0001037
219 Ga0316584_0001680
220 Ga0316584_0002460
221 Ga0316584_0009733
222 Ga0316584_0015953
223 Ga0316584_0034422
224 Ga0316584_0055341
225 Ga0316584_0070104
226 Ga0316584_0117732
227 Ga0316584_0135583
228 Ga0316584_0157892
229 Ga0316584_0243970
230 Ga0316581_0004098
231 Ga0316581_0035684
232 Ga0400484_24180
233 Ga0400484_28197
234 Ga0400484_36831
235 Ga0400490_06651
236 Ga0400490_19578
237 Ga0400490_33975
238 Ga0400490_35087
239 Ga0400490_58021
240 Ga0400485_09394
241 Ga0400485_12791
242 Ga0400485_18422
243 Ga0400485_18722
244 Ga0400488_20310
245 Ga0400486_07564
246 Ga0400486_18425
247 Ga0400486_18753
248 Ga0400486_19779
249 Ga0400483_061917
250 Ga0400483_097471
251 Ga0400483_176499
252 Ga0400483_195000
253 Ga0400483_195564
254 Ga0400489_18127
255 Ga0400489_19840
256 Ga0400489_62086
257 Ga0400489_77515
258 Ga0400489_78220
259 Ga0400489_93966
260 Ga0400487_01631
261 Ga0400487_24787
262 Ga0400487_64491
263 Ga0451795_1091601
264 Ga0451577_0053781
265 Ga0453683_0016017
266 Ga0453683_0128581
267 Ga0453684_0001030
268 Ga0453684_0001369
269 Ga0453684_0008196
270 Ga0453684_0016180
271 Ga0453684_0065127
272 Ga0453684_0089354
273 Ga0453684_0394197
274 Ga0451576_0234899
275 Ga0495628_0082629
276 Ga0495684_0148431

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01855

POR_N

Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg

14

240

0.9

PF17147

PFOR_II

Pyruvate:ferredoxin oxidoreductase core domain II

249

345

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
1yd7-assembly1.cif.gz_A conserved hypothetical protein pfu-1647980-001 from pyrococcus furiosus 0.9396 2 183
4wbx-assembly1.cif.gz_C conserved hypothetical protein pf1771 from pyrococcus furiosus solved by sulfur sad using swiss light source data 0.9173 2 348
4wbx-assembly1.cif.gz_C conserved hypothetical protein pf1771 from pyrococcus furiosus solved by sulfur sad using swiss light source data 0.8905 2 348
1yd7-assembly1.cif.gz_A conserved hypothetical protein pfu-1647980-001 from pyrococcus furiosus 0.8431 2 183
6n2o-assembly1.cif.gz_C 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound 0.8399 2 353
ID Description Score Start End Superfamily
1yd7A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9395 2 183 3.40.50.970
af_Q57724_1_190_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.908 1 189 3.40.50.970
af_Q57724_1_190_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8988 1 189 3.40.50.970
af_O53182_237_440_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8974 3 183 3.40.50.970
af_Q57724_260_365_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.895 238 349 3.40.50.920
ID Description Score Start End GO Terms
AF-A0A351JXP1-F1-model_v4 3-methyl-2-oxobutanoate dehydrogenase subunit beta 0.9905 6 104 GO:0016491
AF-A0A3D3CJU9-F1-model_v4 2-oxoacid:acceptor oxidoreductase subunit alpha (EC 1.2.7.3) 0.9847 6 104 GO:0006979
GO:0047553
AF-A0A7V5W674-F1-model_v4 2-oxoacid:acceptor oxidoreductase subunit alpha (EC 1.2.7.3) 0.9819 6 104 GO:0006979
GO:0047553
AF-A0A3D5U790-F1-model_v4 3-methyl-2-oxobutanoate dehydrogenase subunit beta 0.97 1 108 GO:0016491
AF-A0A7Y3FWY1-F1-model_v4 2-oxoacid:acceptor oxidoreductase subunit alpha 0.9669 4 103 GO:0006979
GO:0016903

Map