F174142

General Info

Members Datasets Scaffolds Average Seq Length
138 98 129 409

Family's Representative Sequence

Representative Sequence 3300046512|Ga0495610_0000458|Ga0495610_0000458_39653_41020
Length 455
Sequence MFLPEGWMRQNSEAPVAFLFYSFKKNDRSKIFLSFLKYYNIMTSTLILLISLLAIAGVIIRPFGIPEYISACAGAAILLLSGLLKFSEGISGFSKGIDVYFFLTGMMMLAETARIEGMFDWLAAHAAKLAKGSSTRLFFLIYLVGTLVTIFLSNDATAVVLTPAVIAAVRASKVKNPLPYLFICAFIANAASFVLPISNPANLVIYGSHLPDLRGWLSSFLIPSIVSIIATFIVLYILQRKALRESLSTDINIPILSGGGKAAIGGIFLSAVILTVSSAWGISLGLPTFISGMVTVMIVCIGARRSPLTIAKGVSWNVLPLVAGLFIIVEAFGKTGLTRSVSELLTSYAQGNVAGAAWGSGIITAVVCNLMNNLPAGLTASSIVHSSAPPEIIRRAILIGIDLGPNLSLTGSLASILWLVALRRENLSVSGWSFLKLGAIVMTVPLLFVLASLFI

Samples

Sample ID Description Type Environment
1 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
2 2643221609 Acidovorax sp. Root217 Isolate Unclassified
3 2643221611 Acidovorax sp. Root219 Isolate Unclassified
4 2738543012 Acidovorax sp. CF301 Isolate Unclassified
5 2816332133 Acidovorax radicis 2721A Isolate Unclassified
6 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
7 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
8 3007872151 Pseudomonas sp. SWRI51 Isolate Rhizosphere
9 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
23 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
38 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
39 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
41 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
42 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
58 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
61 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
62 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
68 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
69 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
70 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
71 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
72 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
73 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
74 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
75 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
76 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
77 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
78 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
79 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
82 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
83 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
84 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
85 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
86 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
87 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
88 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
89 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
90 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
91 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
92 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
98 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.03
Metatranscriptomes 1.45
Isolates 6.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.35
Nodule 0
Rhizoplane 2.9
Rhizosphere 71.01
Stem 0
Stem Tuber 0
Unclassified 21.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25165J46597_1000249 3300003214 Bacteria 72693
2 Ga0055531_10014290 3300003794 Bacteria 3584
3 Ga0070658_10001373 3300005327 Bacteria 20815
4 Ga0070658_10280428 3300005327 Bacteria 1418
5 Ga0070680_100005651 3300005336 Bacteria 9477
6 Ga0070660_100002674 3300005339 Bacteria 12245
7 Ga0070660_100067829 3300005339 Bacteria 2780
8 Ga0070660_100073628 3300005339 Bacteria 2671
9 Ga0070661_100088580 3300005344 Unclassified 2291
10 Ga0070659_100000812 3300005366 Bacteria 22779
11 Ga0070659_100006143 3300005366 Bacteria 8670
12 Ga0070663_100063546 3300005455 Bacteria 2666
13 Ga0068853_100000065 3300005539 Bacteria 75046
14 Ga0070665_100016053 3300005548 Bacteria 7516
15 Ga0070665_100043658 3300005548 Bacteria 4504
16 Ga0070665_100263973 3300005548 Bacteria 1723
17 Ga0068855_100002737 3300005563 Bacteria 21714
18 Ga0068855_100004724 3300005563 Bacteria 16637
19 Ga0068855_100119193 3300005563 Bacteria 3022
20 Ga0068854_100000238 3300005578 Bacteria 37512
21 Ga0081540_1007235 3300005983 Bacteria 7956
22 Ga0081540_1051148 3300005983 Bacteria 2045
23 Ga0105251_10013757 3300009011 Bacteria 4508
24 Ga0105244_10010546 3300009036 Bacteria 5597
25 Ga0105240_10005941 3300009093 Bacteria 18084
26 Ga0105240_10006196 3300009093 Bacteria 17608
27 Ga0105240_10010203 3300009093 Bacteria 13221
28 Ga0105240_10043629 3300009093 Bacteria 5704
29 Ga0105240_10055813 3300009093 Bacteria 4945
30 Ga0105240_10056585 3300009093 Bacteria 4907
31 Ga0105248_10000319 3300009177 Bacteria 56800
32 Ga0105237_10000659 3300009545 Bacteria 47952
33 Ga0105237_10048064 3300009545 Bacteria 4289
34 Ga0105238_10124937 3300009551 Bacteria 2552
35 Ga0099796_10009932 3300010159 Bacteria 2596
36 Ga0105239_10004362 3300010375 Bacteria 16951
37 Ga0157373_10017063 3300013100 Bacteria 5287
38 Ga0157373_10032252 3300013100 Bacteria 3771
39 Ga0157373_10054564 3300013100 Bacteria 2839
40 Ga0157371_10029181 3300013102 Bacteria 3992
41 Ga0157370_10006500 3300013104 Bacteria 12876
42 Ga0157369_10027100 3300013105 Bacteria 6354
43 Ga0157374_10067057 3300013296 Bacteria 3373
44 Ga0157372_10183876 3300013307 Bacteria 2420
45 Ga0213876_10115845 3300021384 Bacteria 1422
46 Ga0213875_10000864 3300021388 Bacteria 22378
47 Ga0213875_10004662 3300021388 Bacteria 7470
48 Ga0228598_1000674 3300024227 Bacteria 7208
49 Ga0209563_104031 3300025230 Bacteria 2889
50 Ga0209759_1000793 3300025256 Bacteria 25859
51 Ga0209233_1000047 3300025261 Bacteria 459614
52 Ga0209257_1000683 3300025304 Bacteria 52794
53 Ga0207655_1000006 3300025728 Bacteria 861092
54 Ga0207655_1020391 3300025728 Bacteria 3409
55 Ga0207705_10020905 3300025909 Unclassified 4670
56 Ga0207705_10103284 3300025909 Bacteria 2099
57 Ga0207695_10008852 3300025913 Bacteria 12533
58 Ga0207695_10043952 3300025913 Bacteria 4756
59 Ga0207695_10135464 3300025913 Bacteria 2416
60 Ga0207671_10001535 3300025914 Bacteria 26478
61 Ga0207657_10005585 3300025919 Bacteria 13135
62 Ga0207657_10009586 3300025919 Bacteria 9720
63 Ga0207657_10072476 3300025919 Bacteria 2914
64 Ga0207652_10005290 3300025921 Bacteria 10471
65 Ga0207690_10001450 3300025932 Bacteria 14839
66 Ga0207711_10000225 3300025941 Bacteria 60644
67 Ga0207667_10008835 3300025949 Bacteria 11925
68 Ga0207667_10036177 3300025949 Bacteria 5293
69 Ga0207667_10081528 3300025949 Bacteria 3351
70 Ga0207640_10000323 3300025981 Bacteria 31989
71 Ga0207639_10000092 3300026041 Bacteria 75024
72 Ga0207678_10155261 3300026067 Bacteria 1954
73 Ga0209588_1014188 3300027671 Bacteria 2438
74 Ga0268266_10001081 3300028379 Bacteria 34140
75 Ga0268266_10136069 3300028379 Bacteria 2201
76 Ga0265338_10003513 3300028800 Bacteria 21957
77 Ga0265762_1000955 3300030760 Bacteria 5186
78 Ga0265760_10000078 3300031090 Bacteria 24886
79 Ga0265340_10044811 3300031247 Bacteria 2163
80 Ga0265331_10017512 3300031250 Bacteria 3733
81 Ga0307510_10049909 3300033180 Bacteria 4446
82 Ga0395898_0264421 3300037466 Bacteria 1641
83 Ga0436364_0134609 3300037853 Bacteria 7716
84 Ga0436364_0195314 3300037853 Bacteria 1411
85 Ga0436364_0292718 3300037853 Bacteria 1590
86 Ga0436364_0293754 3300037853 Bacteria 44649
87 Ga0436364_1076677 3300037853 Bacteria 7334
88 Ga0395901_0057238 3300038443 Bacteria 4055
89 Ga0436365_0273042 3300039437 Bacteria 2264
90 Ga0436365_0896814 3300039437 Bacteria 5576
91 Ga0436365_1692679 3300039437 Bacteria 1420
92 Ga0436361_0889088 3300039447 Bacteria 9170
93 Ga0439438_002322 3300041405 Bacteria 8126
94 Ga0466970_0099055 3300044765 Bacteria 1587
95 Ga0466959_0005083 3300045049 Bacteria 8944
96 Ga0495650_0003190 3300046471 Bacteria 12214
97 Ga0495607_0000533 3300046501 Bacteria 37381
98 Ga0495607_0008447 3300046501 Bacteria 7036
99 Ga0495610_0000458 3300046512 Bacteria 42182
100 Ga0495637_0009556 3300046520 Bacteria 4728
101 Ga0495637_0051627 3300046520 Bacteria 1720
102 Ga0495671_0094007 3300046692 Bacteria 1467
103 Ga0495649_0007201 3300046694 Bacteria 6823
104 Ga0495676_0049627 3300047321 Bacteria 3372
105 Ga0495683_0000129 3300047323 Bacteria 75590
106 Ga0495679_017031 3300047446 Bacteria 2612
107 Ga0495686_0001618 3300047472 Bacteria 23642
108 Ga0496104_0003823 3300048907 Bacteria 13033
109 Ga0496105_0008783 3300048908 Bacteria 7867
110 Ga0496114_0223101 3300048917 Bacteria 1655
111 Ga0496117_0003216 3300048920 Bacteria 19303
112 Ga0496117_0004964 3300048920 Bacteria 14279
113 Ga0496118_0010970 3300048921 Bacteria 8905
114 Ga0496119_0000145 3300048922 Bacteria 99245
115 Ga0496120_0000417 3300048923 Bacteria 67929
116 Ga0496121_0037480 3300048924 Bacteria 4306
117 Ga0496123_0093907 3300048926 Bacteria 1770
118 Ga0496124_0000079 3300048927 Bacteria 212057
119 Ga0496125_0003426 3300048928 Bacteria 19227
120 Ga0496125_0021830 3300048928 Bacteria 5957
121 Ga0501033_0000162 3300049570 Bacteria 63932
122 Ga0501033_0054971 3300049570 Bacteria 2944
123 Ga0501034_0023337 3300049571 Bacteria 6305
124 Ga0501047_0186818 3300049581 Bacteria 1937
125 Ga0501073_0050678 3300049589 Bacteria 2909
126 Ga0501035_0000510 3300049822 Bacteria 43630
127 Ga0501035_0080520 3300049822 Bacteria 2875
128 Ga0501035_0152566 3300049822 Bacteria 2004
129 Ga0500635_0000017 3300053080 Bacteria 113720

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026067 Ga0207678_10155261 Ga0207678_101552613 333
2 3300048924 Ga0496121_0037480 Ga0496121_0037480_2605_3894 358
3 3300009093 Ga0105240_10055813 Ga0105240_100558134 360
4 3300025913 Ga0207695_10135464 Ga0207695_101354642 360
5 3300049570 Ga0501033_0000162 Ga0501033_0000162_32185_33459 360
6 3300049822 Ga0501035_0000510 Ga0501035_0000510_37460_38734 360
7 3300025230 Ga0209563_104031 Ga0209563_1040312 361
8 3300005983 Ga0081540_1051148 Ga0081540_10511482 362
9 3300009093 Ga0105240_10056585 Ga0105240_100565851 363
10 3300025913 Ga0207695_10043952 Ga0207695_100439525 363
11 3300048920 Ga0496117_0003216 Ga0496117_0003216_6391_7653 364
12 3300048927 Ga0496124_0000079 Ga0496124_0000079_86713_87978 364
13 3300048928 Ga0496125_0021830 Ga0496125_0021830_4165_5430 364
14 3300053080 Ga0500635_0000017 Ga0500635_0000017_105808_107067 366
15 3300005327 Ga0070658_10280428 Ga0070658_102804281 368
16 3300005339 Ga0070660_100073628 Ga0070660_1000736282 368
17 3300013307 Ga0157372_10183876 Ga0157372_101838761 368
18 3300025909 Ga0207705_10103284 Ga0207705_101032842 368
19 3300025919 Ga0207657_10072476 Ga0207657_100724762 368
20 3300005548 Ga0070665_100043658 Ga0070665_1000436582 369
21 3300005563 Ga0068855_100004724 Ga0068855_1000047248 369
22 3300009093 Ga0105240_10005941 Ga0105240_100059413 369
23 3300009545 Ga0105237_10048064 Ga0105237_100480642 369
24 3300025949 Ga0207667_10081528 Ga0207667_100815282 369
25 3300045049 Ga0466959_0005083 Ga0466959_0005083_1468_2721 369
26 3300047472 Ga0495686_0001618 Ga0495686_0001618_7940_9244 373
27 3300039447 Ga0436361_0889088 Ga0436361_0889088_5395_6663 374
28 3300021384 Ga0213876_10115845 Ga0213876_101158451 375
29 3300039437 Ga0436365_1692679 Ga0436365_1692679_114_1376 375
30 3300037853 Ga0436364_1076677 Ga0436364_1076677_3534_4811 377
31 3300005548 Ga0070665_100263973 Ga0070665_1002639732 379
32 3300005563 Ga0068855_100002737 Ga0068855_10000273716 379
33 3300025949 Ga0207667_10008835 Ga0207667_100088354 379
34 3300028379 Ga0268266_10136069 Ga0268266_101360692 379
35 3300039437 Ga0436365_0273042 Ga0436365_0273042_450_1697 380
36 3300009093 Ga0105240_10010203 Ga0105240_100102036 381
37 3300037853 Ga0436364_0195314 Ga0436364_0195314_71_1321 382
38 3300005548 Ga0070665_100016053 Ga0070665_1000160532 384
39 3300009545 Ga0105237_10000659 Ga0105237_1000065923 384
40 3300010375 Ga0105239_10004362 Ga0105239_100043623 384
41 3300025914 Ga0207671_10001535 Ga0207671_1000153521 384
42 3300028379 Ga0268266_10001081 Ga0268266_1000108125 384
43 3300021388 Ga0213875_10004662 Ga0213875_100046624 388
44 3300037466 Ga0395898_0264421 Ga0395898_0264421_204_1439 388
45 3300037853 Ga0436364_0292718 Ga0436364_0292718_63_1319 388
46 3300037853 Ga0436364_0293754 Ga0436364_0293754_15645_16913 388
47 3300013100 Ga0157373_10032252 Ga0157373_100322522 389
48 3300013102 Ga0157371_10029181 Ga0157371_100291812 389
49 iso_pu_bacteria 8006984368 8006993916 390
50 3300009011 Ga0105251_10013757 Ga0105251_100137572 391
51 3300025728 Ga0207655_1020391 Ga0207655_10203912 391
52 3300033180 Ga0307510_10049909 Ga0307510_100499092 391
53 iso_pu_bacteria 2643221609 2644063103 391
54 iso_pu_bacteria 2643221611 2644075527 391
55 iso_pu_bacteria 2738543012 2739246746 391
56 iso_pu_bacteria 2816332133 2816475472 391
57 3300009551 Ga0105238_10124937 Ga0105238_101249372 392
58 3300013100 Ga0157373_10017063 Ga0157373_100170632 392
59 3300046501 Ga0495607_0008447 Ga0495607_0008447_121_1362 392
60 3300046520 Ga0495637_0051627 Ga0495637_0051627_401_1642 392
61 iso_pu_bacteria 2599185156 2599332608 392
62 iso_pu_bacteria 2842922631 2842922882 392
63 3300009036 Ga0105244_10010546 Ga0105244_100105467 393
64 3300025256 Ga0209759_1000793 Ga0209759_100079312 393
65 3300025728 Ga0207655_1000006 Ga0207655_1000006591 393
66 3300037853 Ga0436364_0134609 Ga0436364_0134609_6393_7643 393
67 3300039437 Ga0436365_0896814 Ga0436365_0896814_613_1878 393
68 3300041405 Ga0439438_002322 Ga0439438_002322_6656_7909 393
69 3300046501 Ga0495607_0000533 Ga0495607_0000533_24756_26003 393
70 3300048917 Ga0496114_0223101 Ga0496114_0223101_398_1645 393
71 iso_pu_bacteria 2894817345 2894821108 393
72 iso_pu_bacteria 3007872151 3007872271 393
73 3300003794 Ga0055531_10014290 Ga0055531_100142902 394
74 3300005327 Ga0070658_10001373 Ga0070658_1000137316 394
75 3300005336 Ga0070680_100005651 Ga0070680_1000056518 394
76 3300005339 Ga0070660_100002674 Ga0070660_1000026748 394
77 3300005339 Ga0070660_100067829 Ga0070660_1000678292 394
78 3300005344 Ga0070661_100088580 Ga0070661_1000885802 394
79 3300005366 Ga0070659_100000812 Ga0070659_10000081217 394
80 3300005366 Ga0070659_100006143 Ga0070659_1000061432 394
81 3300005455 Ga0070663_100063546 Ga0070663_1000635464 394
82 3300005539 Ga0068853_100000065 Ga0068853_1000000655 394
83 3300005563 Ga0068855_100119193 Ga0068855_1001191933 394
84 3300005578 Ga0068854_100000238 Ga0068854_10000023824 394
85 3300005983 Ga0081540_1007235 Ga0081540_10072355 394
86 3300009093 Ga0105240_10006196 Ga0105240_100061967 394
87 3300009093 Ga0105240_10043629 Ga0105240_100436293 394
88 3300009177 Ga0105248_10000319 Ga0105248_1000031919 394
89 3300010159 Ga0099796_10009932 Ga0099796_100099322 394
90 3300013100 Ga0157373_10054564 Ga0157373_100545642 394
91 3300013104 Ga0157370_10006500 Ga0157370_100065002 394
92 3300013105 Ga0157369_10027100 Ga0157369_100271002 394
93 3300013296 Ga0157374_10067057 Ga0157374_100670572 394
94 3300021388 Ga0213875_10000864 Ga0213875_1000086412 394
95 3300024227 Ga0228598_1000674 Ga0228598_10006743 394
96 3300025304 Ga0209257_1000683 Ga0209257_100068323 394
97 3300025909 Ga0207705_10020905 Ga0207705_100209052 394
98 3300025913 Ga0207695_10008852 Ga0207695_100088522 394
99 3300025919 Ga0207657_10005585 Ga0207657_100055852 394
100 3300025921 Ga0207652_10005290 Ga0207652_100052902 394
101 3300025932 Ga0207690_10001450 Ga0207690_100014503 394
102 3300025941 Ga0207711_10000225 Ga0207711_1000022543 394
103 3300025981 Ga0207640_10000323 Ga0207640_1000032321 394
104 3300026041 Ga0207639_10000092 Ga0207639_100000926 394
105 3300027671 Ga0209588_1014188 Ga0209588_10141882 394
106 3300028800 Ga0265338_10003513 Ga0265338_1000351323 394
107 3300030760 Ga0265762_1000955 Ga0265762_10009553 394
108 3300031090 Ga0265760_10000078 Ga0265760_1000007810 394
109 3300031247 Ga0265340_10044811 Ga0265340_100448112 394
110 3300031250 Ga0265331_10017512 Ga0265331_100175122 394
111 3300038443 Ga0395901_0057238 Ga0395901_0057238_694_1998 394
112 3300046471 Ga0495650_0003190 Ga0495650_0003190_7015_8265 394
113 3300046512 Ga0495610_0000458 Ga0495610_0000458_39653_41020 394
114 3300046520 Ga0495637_0009556 Ga0495637_0009556_466_1716 394
115 3300046692 Ga0495671_0094007 Ga0495671_0094007_43_1293 394
116 3300046694 Ga0495649_0007201 Ga0495649_0007201_5249_6499 394
117 3300047321 Ga0495676_0049627 Ga0495676_0049627_1036_2286 394
118 3300047323 Ga0495683_0000129 Ga0495683_0000129_16605_17855 394
119 3300047446 Ga0495679_017031 Ga0495679_017031_1054_2304 394
120 3300048907 Ga0496104_0003823 Ga0496104_0003823_5061_6311 394
121 3300048908 Ga0496105_0008783 Ga0496105_0008783_3095_4345 394
122 3300048920 Ga0496117_0004964 Ga0496117_0004964_7254_8504 394
123 3300048921 Ga0496118_0010970 Ga0496118_0010970_2419_3669 394
124 3300048922 Ga0496119_0000145 Ga0496119_0000145_64035_65285 394
125 3300048923 Ga0496120_0000417 Ga0496120_0000417_27073_28323 394
126 3300048926 Ga0496123_0093907 Ga0496123_0093907_186_1436 394
127 3300049570 Ga0501033_0054971 Ga0501033_0054971_1329_2576 394
128 3300049571 Ga0501034_0023337 Ga0501034_0023337_3154_4410 394
129 3300049581 Ga0501047_0186818 Ga0501047_0186818_232_1488 394
130 3300049589 Ga0501073_0050678 Ga0501073_0050678_504_1760 394
131 3300049822 Ga0501035_0080520 Ga0501035_0080520_79_1335 394
132 3300049822 Ga0501035_0152566 Ga0501035_0152566_429_1676 394
133 3300003214 JGI25165J46597_1000249 JGI25165J46597_100024928 395
134 3300025261 Ga0209233_1000047 Ga0209233_1000047371 395
135 3300025919 Ga0207657_10009586 Ga0207657_100095864 395
136 3300025949 Ga0207667_10036177 Ga0207667_100361773 395
137 3300044765 Ga0466970_0099055 Ga0466970_0099055_73_1326 395
138 3300048928 Ga0496125_0003426 Ga0496125_0003426_12466_13770 395

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02040

ArsB

Arsenical pump membrane protein

46

455

0.85

PF03600

CitMHS

Citrate transporter

52

422

0.85

PF00939

Na_sulph_symp

Sodium:sulfate symporter transmembrane region

33

244

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5uld-assembly2.cif.gz_C structure and function of the divalent anion/na+ symporter from vibrio cholerae and a humanized variant 0.6763 15 395
6ol1-assembly1.cif.gz_B structure of vcindy in complex with succinate 0.6747 15 394
4f35-assembly2.cif.gz_B crystal structure of a bacterial dicarboxylate/sodium symporter 0.6563 15 394
5uld-assembly2.cif.gz_C structure and function of the divalent anion/na+ symporter from vibrio cholerae and a humanized variant 0.6546 15 395
6ol1-assembly1.cif.gz_B structure of vcindy in complex with succinate 0.6516 15 394
ID Description Score Start End Superfamily
af_I6YCG9_3_406_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.8351 7 392 1.20.1530.20
af_I6YCG9_3_406_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.816 7 392 1.20.1530.20
af_C0PV55_1_138_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.2839 170 285 1.20.140.150
af_Q2G0D6_9_205_1.20.58.220 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphate transport system protein phou homolog 2; domain 2 0.2737 56 285 1.20.58.220
af_Q9XUW4_25_323_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.2727 65 370 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A4Q3NTP3-F1-model_v4 deleted 0.9624 129 395
AF-A0A2W5J5D5-F1-model_v4 deleted 0.9566 39 390
AF-A0A5P6PEE8-F1-model_v4 Response regulator 0.9484 5 392 GO:0000160
GO:0005886
GO:0015105
AF-A0A4Q3P048-F1-model_v4 deleted 0.9476 1 357
AF-A0A6H9THR1-F1-model_v4 Arsenic transporter 0.9475 39 394 GO:0005886
GO:0015105

Feature Viewer

pLDDT pTM Quality
79.75 0.83 High
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Predicted Structure (AlphaFold2)

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