F173839

General Info

Members Datasets Scaffolds Average Seq Length
138 33 276 343

Family's Representative Sequence

Representative Sequence 3300038725|Ga0400484_34136|Ga0400484_34136_4894_5973
Length 359
Sequence MNKHYLSSLLAVFALALIAYVGASVGPLQWLFGVFIPYLAVIVFIVGFVRRVMGWSKSAVPFSIPTTCGQQKSMPWIKQAKIDNPSTGVGVFIRMVLEIVTFRSLFRNTRMKIKSSGTISYNLEIFLWVGALAFHYAFLTTLVRHFRFFLEPVPWCLQMLEKVDSFFRIEILYDVIQFGLPGIYLSGVLLLAAATYLLLRRMTVSNVRYISLASDFFPLFLIMGIAFTGILMRYFTKVDIVSIKELTMGLVTLNPTIPQGISPLFFIHMFFVSILLIYFPFSKLMHMGGVFLSPTRNLKANTREYRHVNPWNYPVKVHTYDAYEDDFRQKMVDAGLPVEKMPEPQPQEPEKPAAEDKKE

Samples

Sample ID Description Type Environment
1 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
2 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
3 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
4 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
5 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
6 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
7 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
8 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
9 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
10 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
11 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
12 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
13 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
18 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
19 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
20 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
21 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
22 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
23 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
24 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
25 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
26 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
27 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
28 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
29 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
30 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
31 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
32 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
33 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.68
Metatranscriptomes 11.59
Isolates 0.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 71.01
Stem 0
Stem Tuber 0
Unclassified 5.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400484_34136 3300038725 Bacteria 6023
2 Ga0316575_10019298 3300031665 Bacteria 2606
3 Ga0316579_10001575 3300031691 Bacteria 8326
4 Ga0316579_10014626 3300031691 Bacteria 3398
5 Ga0316579_10021164 3300031691 Bacteria 2894
6 Ga0316579_10033865 3300031691 Bacteria 2347
7 Ga0316579_10053920 3300031691 Unclassified 1885
8 Ga0265342_10067925 3300031712 Bacteria 2085
9 Ga0316576_10000341 3300031727 Bacteria 20999
10 Ga0316576_10001836 3300031727 Bacteria 11780
11 Ga0316576_10043371 3300031727 Bacteria 3245
12 Ga0316576_10056902 3300031727 Bacteria 2857
13 Ga0316576_10061233 3300031727 Bacteria 2758
14 Ga0316576_10159051 3300031727 Bacteria 1703
15 Ga0316576_10165019 3300031727 Bacteria 1671
16 Ga0316576_10187536 3300031727 Unclassified 1560
17 Ga0316578_10009328 3300031728 Bacteria 5044
18 Ga0316578_10009854 3300031728 Bacteria 4932
19 Ga0316578_10011377 3300031728 Bacteria 4652
20 Ga0316578_10011886 3300031728 Bacteria 4572
21 Ga0316578_10026642 3300031728 Bacteria 3262
22 Ga0316578_10040093 3300031728 Bacteria 2706
23 Ga0316578_10040197 3300031728 Bacteria 2703
24 Ga0316578_10040870 3300031728 Bacteria 2683
25 Ga0316578_10136190 3300031728 Unclassified 1478
26 Ga0316577_10001878 3300031733 Bacteria 10153
27 Ga0316577_10013469 3300031733 Bacteria 4471
28 Ga0316577_10034911 3300031733 Bacteria 2810
29 Ga0316577_10084945 3300031733 Bacteria 1771
30 Ga0316577_10121426 3300031733 Bacteria 1468
31 Ga0316577_10125638 3300031733 Bacteria 1442
32 Ga0316577_10190160 3300031733 Bacteria 1160
33 Ga0316583_10001343 3300032133 Bacteria 8140
34 Ga0316583_10001963 3300032133 Bacteria 7023
35 Ga0316583_10013257 3300032133 Bacteria 2974
36 Ga0316583_10018158 3300032133 Bacteria 2526
37 Ga0316583_10020869 3300032133 Bacteria 2348
38 Ga0316583_10045126 3300032133 Bacteria 1557
39 Ga0316585_10009032 3300032137 Bacteria 2897
40 Ga0316585_10015684 3300032137 Bacteria 2275
41 Ga0316580_10007439 3300032139 Bacteria 3264
42 Ga0316580_10030112 3300032139 Bacteria 1680
43 Ga0316593_10005848 3300032168 Bacteria 3280
44 Ga0316593_10013944 3300032168 Bacteria 2388
45 Ga0316593_10016156 3300032168 Bacteria 2258
46 Ga0316593_10028672 3300032168 Bacteria 1795
47 Ga0316592_1005169 3300033524 Bacteria 2466
48 Ga0316592_1012051 3300033524 Unclassified 1766
49 Ga0316586_1001741 3300033527 Bacteria 2581
50 Ga0316588_1003519 3300033528 Bacteria 2870
51 Ga0316588_1007839 3300033528 Bacteria 2179
52 Ga0316588_1023879 3300033528 Bacteria 1405
53 Ga0316588_1031880 3300033528 Bacteria 1238
54 Ga0316587_1012493 3300033529 Bacteria 1381
55 Ga0316596_1003522 3300033541 Bacteria 3441
56 Ga0316596_1007537 3300033541 Bacteria 2576
57 Ga0316596_1022064 3300033541 Bacteria 1625
58 Ga0316596_1027349 3300033541 Bacteria 1471
59 Ga0316574_0029739 3300035398 Bacteria 3303
60 Ga0316574_0030949 3300035398 Bacteria 3244
61 Ga0316574_0071560 3300035398 Bacteria 2190
62 Ga0316574_0129337 3300035398 Bacteria 1624
63 Ga0316582_0005361 3300036647 Bacteria 6595
64 Ga0316582_0009093 3300036647 Bacteria 5375
65 Ga0316582_0011259 3300036647 Bacteria 4938
66 Ga0316582_0027883 3300036647 Unclassified 3417
67 Ga0316582_0029605 3300036647 Bacteria 3328
68 Ga0316582_0049706 3300036647 Bacteria 2653
69 Ga0316582_0091581 3300036647 Bacteria 2002
70 Ga0316582_0105036 3300036647 Bacteria 1875
71 Ga0316582_0198383 3300036647 Bacteria 1369
72 Ga0316582_0286646 3300036647 Bacteria 1130
73 Ga0316584_0000574 3300036712 Bacteria 19837
74 Ga0316584_0000922 3300036712 Bacteria 16755
75 Ga0316584_0001890 3300036712 Bacteria 13009
76 Ga0316584_0005783 3300036712 Bacteria 8338
77 Ga0316584_0021469 3300036712 Bacteria 4693
78 Ga0316584_0023202 3300036712 Bacteria 4533
79 Ga0316584_0029184 3300036712 Bacteria 4071
80 Ga0316584_0035979 3300036712 Bacteria 3673
81 Ga0316584_0037462 3300036712 Bacteria 3603
82 Ga0316584_0104082 3300036712 Bacteria 2125
83 Ga0316584_0112170 3300036712 Bacteria 2040
84 Ga0316584_0154261 3300036712 Bacteria 1708
85 Ga0316584_0167566 3300036712 Unclassified 1631
86 Ga0316584_0199049 3300036712 Bacteria 1479
87 Ga0316581_0001402 3300037588 Bacteria 5393
88 Ga0316581_0004229 3300037588 Bacteria 3646
89 Ga0400484_36938 3300038725 Unclassified 2173
90 Ga0400484_37010 3300038725 Bacteria 12641
91 Ga0400490_09006 3300038726 Bacteria 131367
92 Ga0400490_22447 3300038726 Bacteria 76643
93 Ga0400490_26661 3300038726 Bacteria 1938
94 Ga0400490_41346 3300038726 Bacteria 3795
95 Ga0400490_49837 3300038726 Unclassified 2575
96 Ga0400490_51393 3300038726 Bacteria 2025
97 Ga0400491_16087 3300038727 Bacteria 2497
98 Ga0400491_29399 3300038727 Bacteria 2287
99 Ga0400491_29678 3300038727 Bacteria 1186
100 Ga0400485_04718 3300038735 Bacteria 4208
101 Ga0400485_07850 3300038735 Bacteria 2887
102 Ga0400485_12144 3300038735 Bacteria 7226
103 Ga0400485_21715 3300038735 Bacteria 56903
104 Ga0400488_05897 3300038741 Bacteria 10179
105 Ga0400488_17897 3300038741 Bacteria 1349
106 Ga0400488_23193 3300038741 Bacteria 22752
107 Ga0400488_35543 3300038741 Bacteria 4078
108 Ga0400486_06603 3300038742 Bacteria 21373
109 Ga0400486_12355 3300038742 Bacteria 46945
110 Ga0400486_18734 3300038742 Bacteria 45001
111 Ga0400486_30854 3300038742 Bacteria 55977
112 Ga0400483_029519 3300039062 Bacteria 3132
113 Ga0400483_068767 3300039062 Bacteria 84641
114 Ga0400483_107517 3300039062 Bacteria 9669
115 Ga0400483_154168 3300039062 Bacteria 5586
116 Ga0400483_254784 3300039062 Bacteria 1076
117 Ga0400483_272039 3300039062 Bacteria 3001
118 Ga0400489_00934 3300039093 Bacteria 47174
119 Ga0400489_13182 3300039093 Bacteria 6669
120 Ga0400489_31218 3300039093 Bacteria 19509
121 Ga0400489_31986 3300039093 Bacteria 16663
122 Ga0400489_39138 3300039093 Bacteria 21530
123 Ga0400487_16151 3300039110 Bacteria 7044
124 Ga0400487_34922 3300039110 Bacteria 34543
125 Ga0400487_34999 3300039110 Bacteria 1680
126 Ga0400487_65646 3300039110 Bacteria 3011
127 Ga0451577_0000353 3300042876 Bacteria 85621
128 Ga0451577_0001701 3300042876 Bacteria 28375
129 Ga0453683_0071445 3300044673 Bacteria 2172
130 Ga0453684_0000498 3300044712 Bacteria 153608
131 Ga0453684_0001092 3300044712 Bacteria 85621
132 Ga0453684_0001450 3300044712 Bacteria 67391
133 Ga0453684_0002534 3300044712 Bacteria 44015
134 Ga0453684_0031017 3300044712 Bacteria 7530
135 Ga0453684_0092068 3300044712 Bacteria 3739
136 Ga0453684_0174953 3300044712 Bacteria 2526
137 Ga0451576_0026672 3300045051 Bacteria 6212
138 2740992770 2740891818 Bacteria 6711283
139 Ga0400484_34136
140 Ga0316575_10019298
141 Ga0316579_10001575
142 Ga0316579_10014626
143 Ga0316579_10021164
144 Ga0316579_10033865
145 Ga0316579_10053920
146 Ga0265342_10067925
147 Ga0316576_10000341
148 Ga0316576_10001836
149 Ga0316576_10043371
150 Ga0316576_10056902
151 Ga0316576_10061233
152 Ga0316576_10159051
153 Ga0316576_10165019
154 Ga0316576_10187536
155 Ga0316578_10009328
156 Ga0316578_10009854
157 Ga0316578_10011377
158 Ga0316578_10011886
159 Ga0316578_10026642
160 Ga0316578_10040093
161 Ga0316578_10040197
162 Ga0316578_10040870
163 Ga0316578_10136190
164 Ga0316577_10001878
165 Ga0316577_10013469
166 Ga0316577_10034911
167 Ga0316577_10084945
168 Ga0316577_10121426
169 Ga0316577_10125638
170 Ga0316577_10190160
171 Ga0316583_10001343
172 Ga0316583_10001963
173 Ga0316583_10013257
174 Ga0316583_10018158
175 Ga0316583_10020869
176 Ga0316583_10045126
177 Ga0316585_10009032
178 Ga0316585_10015684
179 Ga0316580_10007439
180 Ga0316580_10030112
181 Ga0316593_10005848
182 Ga0316593_10013944
183 Ga0316593_10016156
184 Ga0316593_10028672
185 Ga0316592_1005169
186 Ga0316592_1012051
187 Ga0316586_1001741
188 Ga0316588_1003519
189 Ga0316588_1007839
190 Ga0316588_1023879
191 Ga0316588_1031880
192 Ga0316587_1012493
193 Ga0316596_1003522
194 Ga0316596_1007537
195 Ga0316596_1022064
196 Ga0316596_1027349
197 Ga0316574_0029739
198 Ga0316574_0030949
199 Ga0316574_0071560
200 Ga0316574_0129337
201 Ga0316582_0005361
202 Ga0316582_0009093
203 Ga0316582_0011259
204 Ga0316582_0027883
205 Ga0316582_0029605
206 Ga0316582_0049706
207 Ga0316582_0091581
208 Ga0316582_0105036
209 Ga0316582_0198383
210 Ga0316582_0286646
211 Ga0316584_0000574
212 Ga0316584_0000922
213 Ga0316584_0001890
214 Ga0316584_0005783
215 Ga0316584_0021469
216 Ga0316584_0023202
217 Ga0316584_0029184
218 Ga0316584_0035979
219 Ga0316584_0037462
220 Ga0316584_0104082
221 Ga0316584_0112170
222 Ga0316584_0154261
223 Ga0316584_0167566
224 Ga0316584_0199049
225 Ga0316581_0001402
226 Ga0316581_0004229
227 Ga0400484_36938
228 Ga0400484_37010
229 Ga0400490_09006
230 Ga0400490_22447
231 Ga0400490_26661
232 Ga0400490_41346
233 Ga0400490_49837
234 Ga0400490_51393
235 Ga0400491_16087
236 Ga0400491_29399
237 Ga0400491_29678
238 Ga0400485_04718
239 Ga0400485_07850
240 Ga0400485_12144
241 Ga0400485_21715
242 Ga0400488_05897
243 Ga0400488_17897
244 Ga0400488_23193
245 Ga0400488_35543
246 Ga0400486_06603
247 Ga0400486_12355
248 Ga0400486_18734
249 Ga0400486_30854
250 Ga0400483_029519
251 Ga0400483_068767
252 Ga0400483_107517
253 Ga0400483_154168
254 Ga0400483_254784
255 Ga0400483_272039
256 Ga0400489_00934
257 Ga0400489_13182
258 Ga0400489_31218
259 Ga0400489_31986
260 Ga0400489_39138
261 Ga0400487_16151
262 Ga0400487_34922
263 Ga0400487_34999
264 Ga0400487_65646
265 Ga0451577_0000353
266 Ga0451577_0001701
267 Ga0453683_0071445
268 Ga0453684_0000498
269 Ga0453684_0001092
270 Ga0453684_0001450
271 Ga0453684_0002534
272 Ga0453684_0031017
273 Ga0453684_0092068
274 Ga0453684_0174953
275 Ga0451576_0026672
276 2740992770

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02665

Nitrate_red_gam

Nitrate reductase gamma subunit

89

307

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
1y5i-assembly1.cif.gz_C the crystal structure of the narghi mutant nari-k86a 0.7357 29 293
1y4z-assembly1.cif.gz_C the crystal structure of nitrate reductase a, narghi, in complex with the q-site inhibitor pentachlorophenol 0.726 29 293
3ir5-assembly1.cif.gz_C crystal structure of narghi mutant narg-h49c 0.7144 29 293
1siw-assembly1.cif.gz_C crystal structure of the apomolybdo-narghi 0.7116 29 293
3ir6-assembly1.cif.gz_C crystal structure of narghi mutant narg-h49s 0.7047 29 293
ID Description Score Start End Superfamily
af_Q2FVM4_1_215_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.7171 31 293 1.20.950.20
1siwC01 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.7125 30 293 1.20.950.20
af_Q2FVM4_1_215_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.6894 31 293 1.20.950.20
1siwC01 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.6846 30 293 1.20.950.20
af_O33268_1_267_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.5649 28 297 1.20.950.20
ID Description Score Start End GO Terms
AF-T1AIA4-F1-model_v4 Nitrate reductase gamma subunit (EC 1.7.99.4) 0.9484 137 278 GO:0005886
GO:0016491
AF-A0A847UY48-F1-model_v4 Sulfate reduction electron transfer complex DsrMKJOP subunit DsrM 0.9081 10 301 GO:0005886
GO:0016491
AF-A0A3A4SEW1-F1-model_v4 Menaquinol oxidoreductase 0.9052 8 276 GO:0005886
GO:0016491
AF-A0A660ZAY1-F1-model_v4 Menaquinol oxidoreductase 0.9037 7 259 GO:0005886
GO:0016491
AF-A0A1F3X1Y8-F1-model_v4 Nitrate reductase 0.9003 31 303 GO:0005886
GO:0016491

Map