F170688

General Info

Members Datasets Scaffolds Average Seq Length
137 99 274 328

Family's Representative Sequence

Representative Sequence 3300042014|Ga0439457_008477|Ga0439457_008477_1033_2106
Length 357
Sequence MELQPETPFTGLNSWLFDHLEEQTMQHPLPRRGLLAGLAAVPSLAALAACQVQGGADEAGASFPTRAVDFWVPFDAGGSGDLISRAVAKAAEKPLGESLPVTNKPGANGAVGLKELLAGKADGYTICLAVKSLFAIGPLVVDDPDAVTIDQLRIITTLTNEGYVLVVHGDSPYQTLDDLLAADSVNYGTTGVGTGSQLSAGLLFGLAGVEAKDVPFDGGGPTVTALLGQDIDAASLSLAETMPHIEAGDMRPLCVFSEERSVYLNDVPTALEVGHNILVDQRRFIVVPADTPDDVVGVLTLAFEEAREGGEYGQFLQDNFMERWEVDGMDAELHLAEATEQFKAQLDESGVTLGTGE

Samples

Sample ID Description Type Environment
1 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
22 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
30 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
31 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
32 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
33 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
34 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
37 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
38 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
39 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
40 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
41 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
42 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
43 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
44 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
45 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
46 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
47 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
51 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
52 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
53 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
54 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
55 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
56 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
57 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
58 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
59 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
60 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
61 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
62 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
63 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
64 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
70 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
71 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
72 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
73 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
74 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
75 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
76 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
77 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
78 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
79 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
80 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
81 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
82 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
83 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
84 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
85 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
86 2808606394 Promicromonospora sp. C35 Isolate Unclassified
87 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
88 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
89 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
90 2858868258 Micromonospora sp. MH33 Isolate Unclassified
91 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
92 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
93 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
94 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
95 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
96 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
97 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
98 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule
99 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.75
Metatranscriptomes 0
Isolates 18.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.19
Nodule 0.73
Rhizoplane 0.73
Rhizosphere 81.75
Stem 0
Stem Tuber 0
Unclassified 0.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439457_008477 3300042014 Bacteria 2423
2 JGI24740J21852_10031104 3300001979 Bacteria 1726
3 JGI24739J22299_10019711 3300001989 Bacteria 2412
4 JGI24737J22298_10016845 3300001990 Bacteria 2358
5 JGI25406J46586_10002873 3300003203 Bacteria 8117
6 rootH2_10174398 3300003320 Bacteria 2074
7 rootH2_10237845 3300003320 Bacteria 1372
8 JGI25407J50210_10035635 3300003373 Bacteria 1282
9 Ga0065714_10112408 3300005288 Bacteria 1456
10 Ga0070670_100096446 3300005331 Bacteria 2544
11 Ga0070668_100023540 3300005347 Bacteria 4659
12 Ga0070669_100064851 3300005353 Bacteria 2690
13 Ga0070667_100115625 3300005367 Bacteria 2330
14 Ga0070667_100126655 3300005367 Bacteria 2226
15 Ga0070665_100095327 3300005548 Bacteria 2980
16 Ga0068859_100471240 3300005617 Bacteria 1351
17 Ga0068862_100030979 3300005844 Bacteria 4511
18 Ga0081538_10001432 3300005981 Bacteria 24526
19 Ga0081539_10000944 3300005985 Bacteria 54445
20 Ga0075364_10004287 3300006051 Bacteria 8190
21 Ga0075431_100113026 3300006847 Bacteria 2803
22 Ga0097620_100471295 3300006931 Bacteria 1351
23 Ga0105032_102540 3300009979 Bacteria 1626
24 Ga0157372_10332737 3300013307 Bacteria 1769
25 Ga0157375_10243878 3300013308 Bacteria 1957
26 Ga0207647_10079340 3300025904 Bacteria 1971
27 Ga0207650_10035922 3300025925 Bacteria 3602
28 Ga0207709_10118392 3300025935 Bacteria 1784
29 Ga0207668_10022538 3300025972 Bacteria 4034
30 Ga0268265_10021134 3300028380 Bacteria 4553
31 Ga0307515_10000027 3300028794 Bacteria 371624
32 Ga0307515_10017033 3300028794 Bacteria 13273
33 Ga0307515_10054020 3300028794 Bacteria 5908
34 Ga0316177_1018102 3300030731 Bacteria 6386
35 Ga0316176_1215299 3300030732 Bacteria 2665
36 Ga0314311_1179082 3300030733 Bacteria 4749
37 Ga0316180_1123293 3300030736 Bacteria 2766
38 Ga0307513_10000003 3300031456 Bacteria 590921
39 Ga0307408_100009510 3300031548 Bacteria 6413
40 Ga0307408_100018690 3300031548 Bacteria 4657
41 Ga0307408_100026077 3300031548 Bacteria 4009
42 Ga0307408_100071625 3300031548 Bacteria 2563
43 Ga0307408_100153635 3300031548 Bacteria 1819
44 Ga0307405_10014636 3300031731 Bacteria 4224
45 Ga0307405_10051060 3300031731 Bacteria 2564
46 Ga0307405_10057410 3300031731 Bacteria 2445
47 Ga0307405_10068478 3300031731 Bacteria 2271
48 Ga0307405_10100614 3300031731 Bacteria 1937
49 Ga0307405_10122583 3300031731 Bacteria 1781
50 Ga0307413_10036065 3300031824 Bacteria 2844
51 Ga0307413_10119594 3300031824 Bacteria 1781
52 Ga0307410_10005973 3300031852 Bacteria 6516
53 Ga0307410_10030691 3300031852 Bacteria 3438
54 Ga0307410_10144879 3300031852 Bacteria 1762
55 Ga0307406_10009685 3300031901 Bacteria 5417
56 Ga0307406_10093859 3300031901 Bacteria 2027
57 Ga0307407_10011614 3300031903 Bacteria 4201
58 Ga0307407_10025301 3300031903 Bacteria 3127
59 Ga0307407_10051704 3300031903 Bacteria 2356
60 Ga0307407_10104596 3300031903 Bacteria 1764
61 Ga0307412_10018661 3300031911 Bacteria 4180
62 Ga0307412_10045698 3300031911 Bacteria 2864
63 Ga0307412_10064126 3300031911 Bacteria 2481
64 Ga0307412_10212099 3300031911 Bacteria 1478
65 Ga0307409_100003291 3300031995 Bacteria 8729
66 Ga0307409_100138956 3300031995 Bacteria 2090
67 Ga0307409_100211323 3300031995 Bacteria 1744
68 Ga0307409_100230807 3300031995 Bacteria 1677
69 Ga0307409_100410567 3300031995 Bacteria 1296
70 Ga0307409_100587493 3300031995 Bacteria 1099
71 Ga0307416_100064783 3300032002 Bacteria 3000
72 Ga0307416_100361989 3300032002 Bacteria 1473
73 Ga0307416_100750536 3300032002 Bacteria 1068
74 Ga0307414_10025760 3300032004 Bacteria 3773
75 Ga0307411_10044758 3300032005 Bacteria 2842
76 Ga0307411_10081399 3300032005 Bacteria 2230
77 Ga0307415_100010349 3300032126 Bacteria 5279
78 Ga0307415_100034975 3300032126 Bacteria 3277
79 Ga0307415_100037625 3300032126 Bacteria 3182
80 Ga0307415_100037696 3300032126 Bacteria 3179
81 Ga0307415_100139651 3300032126 Bacteria 1848
82 Ga0395899_0023724 3300037312 Bacteria 4642
83 Ga0395900_0092926 3300037418 Bacteria 3099
84 Ga0395898_0081437 3300037466 Bacteria 3121
85 Ga0395901_0358488 3300038443 Bacteria 1504
86 Ga0439436_0000771 3300041404 Bacteria 8670
87 Ga0439439_0000995 3300041406 Bacteria 5321
88 Ga0439465_0027548 3300041413 Bacteria 1800
89 Ga0439433_0000562 3300041999 Bacteria 7037
90 Ga0439449_0000543 3300042007 Bacteria 14119
91 Ga0439449_0001386 3300042007 Bacteria 9481
92 Ga0439457_004572 3300042014 Bacteria 3588
93 Ga0439462_0028400 3300042015 Bacteria 1479
94 Ga0450920_003817 3300042122 Bacteria 2624
95 Ga0466965_0164698 3300044683 Bacteria 1164
96 Ga0466960_0089309 3300044901 Bacteria 1568
97 Ga0466960_0096382 3300044901 Bacteria 1516
98 Ga0495585_0105725 3300046492 Bacteria 1501
99 Ga0495581_0053964 3300047315 Bacteria 2320
100 Ga0495676_0279447 3300047321 Bacteria 1131
101 Ga0496102_0008427 3300048905 Bacteria 8836
102 Ga0501032_0007933 3300049569 Bacteria 7731
103 Ga0501036_0098421 3300049572 Bacteria 2473
104 Ga0501037_0006528 3300049573 Bacteria 8536
105 Ga0501038_0017889 3300049574 Bacteria 6404
106 Ga0501039_0034539 3300049575 Bacteria 3902
107 Ga0501070_0030040 3300049586 Bacteria 4554
108 Ga0501073_0013617 3300049589 Bacteria 5916
109 nmdc:mga0yw44_128751_c1 3300050492 Bacteria 1637
110 nmdc:mga0qj67_352218_c1 3300050509 Unclassified 1190
111 nmdc:mga06r32_68583_c1 3300050510 Bacteria 3426
112 Ga0500589_067875 3300053147 Bacteria 1620
113 2537900972 2537561592 Bacteria 4348607
114 2555230892 2554235227 Bacteria 3637389
115 2644637767 2643221715 Bacteria 6671032
116 2676482264 2675903059 Bacteria 8644972
117 2738697867 2738541272 Bacteria 6848551
118 2739326716 2738543027 Bacteria 6409078
119 2739604749 2739367654 Bacteria 6049412
120 2760308229 2758568522 Bacteria 5953541
121 2760623188 2758568621 Bacteria 5967089
122 2774396982 2773857762 Bacteria 5971770
123 2808893820 2808606370 Bacteria 4942454
124 2809027936 2808606394 Bacteria 6248540
125 2809198628 2808606439 Bacteria 5952208
126 2816427336 2816332119 Bacteria 8120218
127 2839986071 2839986021 Bacteria 3685650
128 2858875380 2858868258 Bacteria 7683772
129 2895429815 2895427314 Bacteria 13147766
130 2919392516 2919391150 Bacteria 4884741
131 2939601671 2939598168 Bacteria 4687164
132 2945923370 2945920336 Bacteria 4501603
133 2945945196 2945941187 Bacteria 4682474
134 2946040912 2946037020 Bacteria 4900426
135 2954002158 2953998280 Bacteria 4812144
136 8054610345 8054609563 Bacteria 5170090
137 8056058451 8056054917 Bacteria 5736694
138 Ga0439457_008477
139 JGI24740J21852_10031104
140 JGI24739J22299_10019711
141 JGI24737J22298_10016845
142 JGI25406J46586_10002873
143 rootH2_10174398
144 rootH2_10237845
145 JGI25407J50210_10035635
146 Ga0065714_10112408
147 Ga0070670_100096446
148 Ga0070668_100023540
149 Ga0070669_100064851
150 Ga0070667_100115625
151 Ga0070667_100126655
152 Ga0070665_100095327
153 Ga0068859_100471240
154 Ga0068862_100030979
155 Ga0081538_10001432
156 Ga0081539_10000944
157 Ga0075364_10004287
158 Ga0075431_100113026
159 Ga0097620_100471295
160 Ga0105032_102540
161 Ga0157372_10332737
162 Ga0157375_10243878
163 Ga0207647_10079340
164 Ga0207650_10035922
165 Ga0207709_10118392
166 Ga0207668_10022538
167 Ga0268265_10021134
168 Ga0307515_10000027
169 Ga0307515_10017033
170 Ga0307515_10054020
171 Ga0316177_1018102
172 Ga0316176_1215299
173 Ga0314311_1179082
174 Ga0316180_1123293
175 Ga0307513_10000003
176 Ga0307408_100009510
177 Ga0307408_100018690
178 Ga0307408_100026077
179 Ga0307408_100071625
180 Ga0307408_100153635
181 Ga0307405_10014636
182 Ga0307405_10051060
183 Ga0307405_10057410
184 Ga0307405_10068478
185 Ga0307405_10100614
186 Ga0307405_10122583
187 Ga0307413_10036065
188 Ga0307413_10119594
189 Ga0307410_10005973
190 Ga0307410_10030691
191 Ga0307410_10144879
192 Ga0307406_10009685
193 Ga0307406_10093859
194 Ga0307407_10011614
195 Ga0307407_10025301
196 Ga0307407_10051704
197 Ga0307407_10104596
198 Ga0307412_10018661
199 Ga0307412_10045698
200 Ga0307412_10064126
201 Ga0307412_10212099
202 Ga0307409_100003291
203 Ga0307409_100138956
204 Ga0307409_100211323
205 Ga0307409_100230807
206 Ga0307409_100410567
207 Ga0307409_100587493
208 Ga0307416_100064783
209 Ga0307416_100361989
210 Ga0307416_100750536
211 Ga0307414_10025760
212 Ga0307411_10044758
213 Ga0307411_10081399
214 Ga0307415_100010349
215 Ga0307415_100034975
216 Ga0307415_100037625
217 Ga0307415_100037696
218 Ga0307415_100139651
219 Ga0395899_0023724
220 Ga0395900_0092926
221 Ga0395898_0081437
222 Ga0395901_0358488
223 Ga0439436_0000771
224 Ga0439439_0000995
225 Ga0439465_0027548
226 Ga0439433_0000562
227 Ga0439449_0000543
228 Ga0439449_0001386
229 Ga0439457_004572
230 Ga0439462_0028400
231 Ga0450920_003817
232 Ga0466965_0164698
233 Ga0466960_0089309
234 Ga0466960_0096382
235 Ga0495585_0105725
236 Ga0495581_0053964
237 Ga0495676_0279447
238 Ga0496102_0008427
239 Ga0501032_0007933
240 Ga0501036_0098421
241 Ga0501037_0006528
242 Ga0501038_0017889
243 Ga0501039_0034539
244 Ga0501070_0030040
245 Ga0501073_0013617
246 nmdc:mga0yw44_128751_c1
247 nmdc:mga0qj67_352218_c1
248 nmdc:mga06r32_68583_c1
249 Ga0500589_067875
250 2537900972
251 2555230892
252 2644637767
253 2676482264
254 2738697867
255 2739326716
256 2739604749
257 2760308229
258 2760623188
259 2774396982
260 2808893820
261 2809027936
262 2809198628
263 2816427336
264 2839986071
265 2858875380
266 2895429815
267 2919392516
268 2939601671
269 2945923370
270 2945945196
271 2946040912
272 2954002158
273 8054610345
274 8056058451

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

83

351

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9037 47 294
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.8917 47 295
2qpq-assembly3.cif.gz_C structure of bug27 from bordetella pertussis 0.8854 47 294
2qpq-assembly2.cif.gz_B structure of bug27 from bordetella pertussis 0.8815 51 294
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.8696 47 294
ID Description Score Start End Superfamily
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9225 104 219 3.40.190.10
2qpqC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9135 104 219 3.40.190.10
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8864 104 219 3.40.190.10
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8833 104 218 3.40.190.10
2f5xC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8572 105 216 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A3P7T6U9-F1-model_v4 Extradiol ring-cleavage dioxygenase LigAB LigA subunit domain-containing protein 0.9379 117 284
AF-A0A4Q5X7P7-F1-model_v4 deleted 0.9359 72 292
AF-A0A653JSR9-F1-model_v4 deleted 0.9348 51 292
AF-A0A4R5Q9P2-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9312 47 293
AF-A0A1S8FWM4-F1-model_v4 deleted 0.9306 47 290

Map