F167790

General Info

Members Datasets Scaffolds Average Seq Length
136 107 272 376

Family's Representative Sequence

Representative Sequence 3300048911|Ga0496108_0046133|Ga0496108_0046133_973_2190
Length 405
Sequence MMEGMSATSSMPKRPSDPLDLIDVDSLLSDEEKAIRAATRQVCADVVDPYVMDWYESGDLPVARELAKEFGKVGLLGMHLEGYGCAGMSAVDYGLACLELEASDSGIRSLVSVQGSLAMFAIWRFGTEQHKQEWLPKMAAGEAIGCFGLTEPDHGSDPGSMRTRARRDGDDWVLNGSKMWITNGSIADVAVVWANAGEENGGIRGFVVPTDTKGFAAHKITHKMSLRASITSELTFENLRLPADAVFPDVAGLKGPLACLGEARYGIVWGSLGAARSSLEAARRYSMERIQFGRPIAGFQLTQAKLANMATELQLGQLLALHLGRRKDTVGLRPEQVSVGKYNNITKAIEICRTARTILGANGVSGEYPVMRHANNLESVLTYEGTVEMHTLVIGQALTGESAFR

Samples

Sample ID Description Type Environment
1 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
4 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
5 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
6 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
7 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
10 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
11 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
13 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
14 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
15 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
16 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
20 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
21 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
22 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
23 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
24 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
25 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
26 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
27 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
28 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
29 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
30 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
31 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
32 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
33 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
34 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
35 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
36 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
37 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
38 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
39 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
40 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
41 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
42 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
43 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
44 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
45 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
46 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
47 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
48 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
49 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
50 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
51 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
52 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
53 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
54 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
55 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
56 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
57 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
58 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
72 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
73 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
74 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
75 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
76 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
77 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
78 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
79 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
82 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
83 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
84 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
85 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
86 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
87 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
88 3300053106 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
91 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
92 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
93 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
94 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
95 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
96 2643221615 Nocardioides sp. Root224 Isolate Unclassified
97 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
98 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
99 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
100 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
101 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
102 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
103 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
104 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
105 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
106 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
107 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.71
Metatranscriptomes 0
Isolates 10.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.56
Nodule 0
Rhizoplane 9.56
Rhizosphere 67.65
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496108_0046133 3300048911 Bacteria 3640
2 Ga0070714_100230603 3300005435 Bacteria 1705
3 Ga0070679_100152041 3300005530 Bacteria 2291
4 Ga0070679_100291029 3300005530 Bacteria 1585
5 Ga0070665_100004485 3300005548 Bacteria 14657
6 Ga0070664_100246891 3300005564 Bacteria 1603
7 Ga0068860_100000558 3300005843 Bacteria 45268
8 Ga0081540_1005563 3300005983 Bacteria 9384
9 Ga0075365_10038026 3300006038 Bacteria 3126
10 Ga0075364_10047492 3300006051 Bacteria 2796
11 Ga0075364_10156792 3300006051 Bacteria 1536
12 Ga0075367_10029353 3300006178 Bacteria 3145
13 Ga0114129_10000131 3300009147 Bacteria 76741
14 Ga0157369_10006194 3300013105 Bacteria 13880
15 Ga0157375_10389723 3300013308 Bacteria 1560
16 Ga0163163_10256235 3300014325 Bacteria 1800
17 Ga0213876_10049860 3300021384 Bacteria 2212
18 Ga0207652_10108856 3300025921 Bacteria 2456
19 Ga0268266_10002333 3300028379 Bacteria 20544
20 Ga0268264_10000815 3300028381 Bacteria 33586
21 Ga0316576_10007310 3300031727 Bacteria 6942
22 Ga0307407_10014052 3300031903 Bacteria 3907
23 Ga0373957_0063411 3300035120 Bacteria 1435
24 Ga0395899_0053238 3300037312 Bacteria 2998
25 Ga0395899_0248359 3300037312 Bacteria 1222
26 Ga0395900_0221207 3300037418 Bacteria 1908
27 Ga0395900_0325822 3300037418 Bacteria 1515
28 Ga0395905_0103333 3300037471 Bacteria 2675
29 Ga0436364_0053786 3300037853 Bacteria 10554
30 Ga0395901_0022465 3300038443 Bacteria 6466
31 Ga0451833_0868449 3300041491 Bacteria 1431
32 Ga0451843_0895190 3300041509 Bacteria 1907
33 Ga0451843_1485394 3300041509 Bacteria 2063
34 Ga0451853_2035907 3300041512 Bacteria 9369
35 Ga0439442_010811 3300042002 Bacteria 1854
36 Ga0439448_0133066 3300042005 Bacteria 858
37 Ga0439457_006439 3300042014 Bacteria 2879
38 Ga0450920_044629 3300042122 Bacteria 886
39 Ga0466972_0067824 3300044658 Bacteria 1704
40 Ga0466965_0001286 3300044683 Bacteria 9994
41 Ga0466965_0048502 3300044683 Bacteria 2104
42 Ga0466966_0073613 3300044684 Bacteria 2136
43 Ga0466966_0122933 3300044684 Bacteria 1593
44 Ga0466961_0085399 3300044693 Bacteria 1996
45 Ga0466961_0108941 3300044693 Bacteria 1743
46 Ga0466970_0005320 3300044765 Bacteria 6380
47 Ga0466970_0055860 3300044765 Bacteria 2109
48 Ga0466957_0286591 3300044842 Bacteria 1103
49 Ga0466958_0030343 3300045836 Bacteria 3211
50 Ga0466967_0022973 3300045976 Bacteria 5102
51 Ga0466967_0031748 3300045976 Bacteria 4452
52 Ga0466967_0351406 3300045976 Bacteria 1427
53 Ga0466967_0897999 3300045976 Bacteria 881
54 Ga0495603_0186314 3300046455 Bacteria 1200
55 Ga0495594_0233797 3300046499 Bacteria 1047
56 Ga0495665_0003630 3300046531 Bacteria 8374
57 Ga0495622_0098723 3300046557 Bacteria 1339
58 Ga0495623_0078828 3300046679 Bacteria 2041
59 Ga0495658_0076763 3300046683 Bacteria 1953
60 Ga0495581_0005105 3300047315 Bacteria 7602
61 Ga0495687_056442 3300047443 Bacteria 1638
62 Ga0496101_0020658 3300048904 Bacteria 4514
63 Ga0496102_0006753 3300048905 Bacteria 9796
64 Ga0496103_0016565 3300048906 Bacteria 4398
65 Ga0496105_0158600 3300048908 Bacteria 1858
66 Ga0496105_0314937 3300048908 Bacteria 1255
67 Ga0496110_0014195 3300048913 Bacteria 6608
68 Ga0496111_0067515 3300048914 Bacteria 2598
69 Ga0496114_0003719 3300048917 Bacteria 11748
70 Ga0496114_0004708 3300048917 Bacteria 10616
71 Ga0496114_0109539 3300048917 Bacteria 2365
72 Ga0496114_0205965 3300048917 Bacteria 1724
73 Ga0496114_0218611 3300048917 Bacteria 1672
74 Ga0496126_0069307 3300048929 Bacteria 3147
75 Ga0496126_0199356 3300048929 Bacteria 1691
76 Ga0501031_0001081 3300049568 Bacteria 16565
77 Ga0501032_0023068 3300049569 Bacteria 4307
78 Ga0501032_0074316 3300049569 Bacteria 2265
79 Ga0501034_0054759 3300049571 Bacteria 4016
80 Ga0501036_0001655 3300049572 Bacteria 17262
81 Ga0501036_0016314 3300049572 Bacteria 6206
82 Ga0501036_0422347 3300049572 Bacteria 1111
83 Ga0501037_0008873 3300049573 Bacteria 7362
84 Ga0501038_0009045 3300049574 Bacteria 9141
85 Ga0501038_0027682 3300049574 Bacteria 5041
86 Ga0501039_0004382 3300049575 Bacteria 10645
87 Ga0501039_0009101 3300049575 Bacteria 7568
88 Ga0501040_0007016 3300049576 Bacteria 7300
89 Ga0501042_0001444 3300049578 Bacteria 13979
90 Ga0501043_0041187 3300049579 Bacteria 3629
91 Ga0501043_0064605 3300049579 Bacteria 2874
92 Ga0501046_0000771 3300049580 Bacteria 31008
93 Ga0501046_0005962 3300049580 Bacteria 10843
94 Ga0501046_0018617 3300049580 Bacteria 5772
95 Ga0501047_0087002 3300049581 Bacteria 3002
96 Ga0501048_0003202 3300049582 Bacteria 12475
97 Ga0501048_0037659 3300049582 Bacteria 3473
98 Ga0501068_0114413 3300049584 Bacteria 1679
99 Ga0501069_0035841 3300049585 Bacteria 2734
100 Ga0501070_0030334 3300049586 Bacteria 4530
101 Ga0501071_0005569 3300049587 Bacteria 8110
102 Ga0501074_0061981 3300049590 Bacteria 2694
103 Ga0501076_0008130 3300049592 Bacteria 7672
104 Ga0501077_0008808 3300049593 Bacteria 6262
105 Ga0501080_0003940 3300049742 Bacteria 13143
106 Ga0501081_0001410 3300049743 Bacteria 14691
107 Ga0501035_0013412 3300049822 Bacteria 7564
108 Ga0501045_0002699 3300049824 Bacteria 12117
109 nmdc:mga03683_5184_c2 3300050489 Bacteria 2573
110 nmdc:mga00v17_26111_c1 3300050491 Bacteria 3399
111 nmdc:mga0yw44_19850_c1 3300050492 Bacteria 3715
112 nmdc:mga0yw44_80627_c1 3300050492 Bacteria 2039
113 nmdc:mga06z11_11423_c1 3300050494 Bacteria 3829
114 nmdc:mga05p37_407_c1 3300050507 Bacteria 46625
115 Ga0500641_0000937 3300053096 Bacteria 10417
116 Ga0500558_154098 3300053106 Bacteria 850
117 Ga0500593_000077 3300053117 Bacteria 36560
118 Ga0500559_0002131 3300053136 Bacteria 10537
119 Ga0501084_0004747 3300054114 Bacteria 11106
120 Ga0466962_0079081 3300061719 Bacteria 1572
121 Ga0466962_0090967 3300061719 Bacteria 1462
122 Ga0530510_0002302 3300061734 Bacteria 13088
123 2585296710 2582581312 Bacteria 7308206
124 2644019745 2643221601 Bacteria 7493239
125 2644093374 2643221615 Bacteria 5487866
126 2644180365 2643221631 Bacteria 8168043
127 2644322984 2643221657 Bacteria 5490246
128 2644455418 2643221681 Bacteria 3707866
129 2808872933 2808606365 Bacteria 4301966
130 2812360971 2811994879 Bacteria 9313447
131 2812374433 2811994882 Bacteria 4688362
132 2862513032 2862507626 Bacteria 9425308
133 2917737008 2917736166 Bacteria 9690793
134 2919449275 2919446982 Bacteria 3994487
135 2954010753 2954002825 Bacteria 9173742
136 8048130741 8048127548 Bacteria 11053136
137 Ga0496108_0046133
138 Ga0070714_100230603
139 Ga0070679_100152041
140 Ga0070679_100291029
141 Ga0070665_100004485
142 Ga0070664_100246891
143 Ga0068860_100000558
144 Ga0081540_1005563
145 Ga0075365_10038026
146 Ga0075364_10047492
147 Ga0075364_10156792
148 Ga0075367_10029353
149 Ga0114129_10000131
150 Ga0157369_10006194
151 Ga0157375_10389723
152 Ga0163163_10256235
153 Ga0213876_10049860
154 Ga0207652_10108856
155 Ga0268266_10002333
156 Ga0268264_10000815
157 Ga0316576_10007310
158 Ga0307407_10014052
159 Ga0373957_0063411
160 Ga0395899_0053238
161 Ga0395899_0248359
162 Ga0395900_0221207
163 Ga0395900_0325822
164 Ga0395905_0103333
165 Ga0436364_0053786
166 Ga0395901_0022465
167 Ga0451833_0868449
168 Ga0451843_0895190
169 Ga0451843_1485394
170 Ga0451853_2035907
171 Ga0439442_010811
172 Ga0439448_0133066
173 Ga0439457_006439
174 Ga0450920_044629
175 Ga0466972_0067824
176 Ga0466965_0001286
177 Ga0466965_0048502
178 Ga0466966_0073613
179 Ga0466966_0122933
180 Ga0466961_0085399
181 Ga0466961_0108941
182 Ga0466970_0005320
183 Ga0466970_0055860
184 Ga0466957_0286591
185 Ga0466958_0030343
186 Ga0466967_0022973
187 Ga0466967_0031748
188 Ga0466967_0351406
189 Ga0466967_0897999
190 Ga0495603_0186314
191 Ga0495594_0233797
192 Ga0495665_0003630
193 Ga0495622_0098723
194 Ga0495623_0078828
195 Ga0495658_0076763
196 Ga0495581_0005105
197 Ga0495687_056442
198 Ga0496101_0020658
199 Ga0496102_0006753
200 Ga0496103_0016565
201 Ga0496105_0158600
202 Ga0496105_0314937
203 Ga0496110_0014195
204 Ga0496111_0067515
205 Ga0496114_0003719
206 Ga0496114_0004708
207 Ga0496114_0109539
208 Ga0496114_0205965
209 Ga0496114_0218611
210 Ga0496126_0069307
211 Ga0496126_0199356
212 Ga0501031_0001081
213 Ga0501032_0023068
214 Ga0501032_0074316
215 Ga0501034_0054759
216 Ga0501036_0001655
217 Ga0501036_0016314
218 Ga0501036_0422347
219 Ga0501037_0008873
220 Ga0501038_0009045
221 Ga0501038_0027682
222 Ga0501039_0004382
223 Ga0501039_0009101
224 Ga0501040_0007016
225 Ga0501042_0001444
226 Ga0501043_0041187
227 Ga0501043_0064605
228 Ga0501046_0000771
229 Ga0501046_0005962
230 Ga0501046_0018617
231 Ga0501047_0087002
232 Ga0501048_0003202
233 Ga0501048_0037659
234 Ga0501068_0114413
235 Ga0501069_0035841
236 Ga0501070_0030334
237 Ga0501071_0005569
238 Ga0501074_0061981
239 Ga0501076_0008130
240 Ga0501077_0008808
241 Ga0501080_0003940
242 Ga0501081_0001410
243 Ga0501035_0013412
244 Ga0501045_0002699
245 nmdc:mga03683_5184_c2
246 nmdc:mga00v17_26111_c1
247 nmdc:mga0yw44_19850_c1
248 nmdc:mga0yw44_80627_c1
249 nmdc:mga06z11_11423_c1
250 nmdc:mga05p37_407_c1
251 Ga0500641_0000937
252 Ga0500558_154098
253 Ga0500593_000077
254 Ga0500559_0002131
255 Ga0501084_0004747
256 Ga0466962_0079081
257 Ga0466962_0090967
258 Ga0530510_0002302
259 2585296710
260 2644019745
261 2644093374
262 2644180365
263 2644322984
264 2644455418
265 2808872933
266 2812360971
267 2812374433
268 2862513032
269 2917737008
270 2919449275
271 2954010753
272 8048130741

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

29

142

0.99

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

251

399

0.98

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

146

239

0.96

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

265

388

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3swo-assembly1.cif.gz_D crystal structure of a glutaryl-coa dehydrogenase from mycobacterium smegmatis in complex with fadh2 0.9813 8 394
3sf6-assembly1.cif.gz_A crystal structure of glutaryl-coa dehydrogenase from mycobacterium smegmatis 0.9791 8 394
3swo-assembly1.cif.gz_D crystal structure of a glutaryl-coa dehydrogenase from mycobacterium smegmatis in complex with fadh2 0.9788 8 394
2r0m-assembly1.cif.gz_A the effect of a glu370asp mutation in glutaryl-coa dehydrogenase on proton transfer to the dienolate intermediate 0.9767 8 394
3sf6-assembly1.cif.gz_A crystal structure of glutaryl-coa dehydrogenase from mycobacterium smegmatis 0.9766 8 394
ID Description Score Start End Superfamily
1siqA01 Mainly Alpha;Orthogonal Bundle;Butyryl-Coa Dehydrogenase, subunit A; domain 1;Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.9746 8 136 1.10.540.10
3swoC01 Mainly Alpha;Orthogonal Bundle;Butyryl-Coa Dehydrogenase, subunit A; domain 1;Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.9708 8 136 1.10.540.10
af_Q20772_256_409_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.969 241 394 1.20.140.10
1siqA01 Mainly Alpha;Orthogonal Bundle;Butyryl-Coa Dehydrogenase, subunit A; domain 1;Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.9672 8 136 1.10.540.10
3eonC01 Mainly Alpha;Orthogonal Bundle;Butyryl-Coa Dehydrogenase, subunit A; domain 1;Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.9642 7 136 1.10.540.10
ID Description Score Start End GO Terms
AF-A0A522QDU2-F1-model_v4 Acyl-CoA dehydrogenase 0.9926 15 120 GO:0000062
GO:0004361
GO:0033539
GO:0046949
GO:0050660
AF-A0A2V6FNN3-F1-model_v4 Acyl-CoA dehydrogenase 0.9802 15 330 GO:0000062
GO:0004361
GO:0033539
GO:0046949
GO:0050660
AF-A0A6B0SNZ5-F1-model_v4 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) 0.9781 12 394 GO:0000062
GO:0004361
GO:0033539
GO:0046949
GO:0050660
AF-A0A2R5LKE4-F1-model_v4 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) 0.978 21 394 GO:0000062
GO:0004361
GO:0005743
GO:0005759
GO:0033539
GO:0046949
GO:0050660
AF-A0A536XM66-F1-model_v4 glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) 0.9759 28 394 GO:0000062
GO:0004361
GO:0033539
GO:0046949
GO:0050660

Map