F167126

General Info

Members Datasets Scaffolds Average Seq Length
136 114 131 244

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10050524|Ga0307508_100505242
Length 269
Sequence VNSIDLNADLGEGFGRWRLGDDEALLTIVTSANVACGFHAGDPSTMHRICRAAVAGGVAIGAQVGYRDLAGFGRRRIDYDLDELRDDVIYQIGALEGFCRVAGGRVDYVKPHGALYNTAAVDEGQASAVVEAVIAYDRGLPVLCQPGSVLARVADAAGLTVVGEGFADRGYRPDGTLAPRSAPGAVIHEPEAVVARAVRMAVDATVETADGATIPCRVDSICVHGDTPGAVDLATRVRDALRLTGMSVKSGLRRPAHGESAEGGSGRPA

Samples

Sample ID Description Type Environment
1 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
3 2842849001 Pseudomonas sp. R-72008 Isolate Unclassified
4 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
19 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
31 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
45 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
46 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
47 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
48 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
49 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
52 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
53 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
54 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
55 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
56 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
57 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
58 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
59 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
60 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
61 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
62 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
63 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
64 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
65 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
66 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
67 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
68 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
69 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
70 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
77 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
78 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
82 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
83 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
84 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
85 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
86 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
87 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
88 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
89 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
90 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
91 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
92 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
96 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
97 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
98 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
105 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
111 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
112 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
113 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
114 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.59
Metatranscriptomes 0.74
Isolates 3.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.94
Nodule 0.74
Rhizoplane 0.74
Rhizosphere 86.03
Stem 0
Stem Tuber 0
Unclassified 9.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS1b_contig_8685489 2162886011 Bacteria 4176
2 rootH2_10031309 3300003320 Bacteria 2701
3 Ga0055540_1000060 3300003792 Bacteria 131775
4 Ga0070670_100294039 3300005331 Bacteria 1420
5 Ga0070682_100021269 3300005337 Bacteria 3826
6 Ga0070660_100455046 3300005339 Bacteria 1062
7 Ga0070661_100007479 3300005344 Bacteria 7535
8 Ga0070668_100002517 3300005347 Bacteria 13492
9 Ga0070667_100131844 3300005367 Bacteria 2182
10 Ga0070681_10225134 3300005458 Bacteria 1790
11 Ga0068853_100017987 3300005539 Bacteria 5842
12 Ga0070665_100041028 3300005548 Bacteria 4651
13 Ga0068860_100110910 3300005843 Bacteria 2622
14 Ga0068862_100012227 3300005844 Bacteria 7097
15 Ga0081538_10018997 3300005981 Bacteria 5132
16 Ga0081540_1074028 3300005983 Bacteria 1562
17 Ga0081539_10035137 3300005985 Bacteria 3017
18 Ga0070717_10090304 3300006028 Unclassified 2585
19 Ga0075428_100002085 3300006844 Bacteria 21566
20 Ga0075428_100475103 3300006844 Bacteria 1338
21 Ga0075430_100003626 3300006846 Bacteria 12948
22 Ga0075430_100111248 3300006846 Bacteria 2284
23 Ga0075431_100007213 3300006847 Bacteria 11058
24 Ga0075431_100070930 3300006847 Bacteria 3594
25 Ga0075429_100001362 3300006880 Bacteria 19975
26 Ga0075429_100023149 3300006880 Bacteria 5387
27 Ga0075429_100025196 3300006880 Bacteria 5163
28 Ga0075429_100378236 3300006880 Bacteria 1240
29 Ga0114129_10003843 3300009147 Bacteria 21172
30 Ga0114129_10005201 3300009147 Bacteria 18333
31 Ga0114129_10017290 3300009147 Bacteria 10271
32 Ga0105243_10352293 3300009148 Bacteria 1352
33 Ga0157378_10460441 3300013297 Bacteria 1264
34 Ga0163163_10292253 3300014325 Bacteria 1682
35 Ga0157379_10079457 3300014968 Bacteria 2937
36 Ga0157379_10146508 3300014968 Bacteria 2129
37 Ga0206353_11357054 3300020082 Bacteria 1814
38 Ga0209051_1000149 3300025303 Bacteria 132185
39 Ga0207707_10063228 3300025912 Bacteria 3221
40 Ga0207660_10069886 3300025917 Bacteria 2551
41 Ga0207649_10228856 3300025920 Bacteria 1328
42 Ga0207690_10041962 3300025932 Bacteria 3002
43 Ga0207711_10067659 3300025941 Bacteria 3093
44 Ga0207668_10012261 3300025972 Bacteria 5241
45 Ga0207703_10397150 3300026035 Bacteria 1279
46 Ga0207676_10190803 3300026095 Bacteria 1803
47 Ga0207674_10061444 3300026116 Bacteria 3796
48 Ga0268266_10424007 3300028379 Bacteria 1261
49 Ga0268265_10040600 3300028380 Bacteria 3438
50 Ga0307515_10025311 3300028794 Bacteria 10277
51 Ga0307512_10015335 3300030522 Bacteria 7108
52 Ga0265330_10076932 3300031235 Bacteria 1440
53 Ga0265316_10010154 3300031344 Bacteria 8598
54 Ga0265316_10034036 3300031344 Bacteria 4143
55 Ga0265316_10043044 3300031344 Bacteria 3604
56 Ga0265316_10061393 3300031344 Bacteria 2919
57 Ga0265316_10264720 3300031344 Bacteria 1260
58 Ga0307513_10005858 3300031456 Bacteria 16149
59 Ga0307513_10119634 3300031456 Bacteria 2605
60 Ga0307509_10005707 3300031507 Bacteria 17162
61 Ga0307408_100060804 3300031548 Bacteria 2755
62 Ga0307508_10003917 3300031616 Bacteria 14769
63 Ga0307508_10022052 3300031616 Bacteria 5793
64 Ga0307508_10050524 3300031616 Bacteria 3700
65 Ga0307516_10492843 3300031730 Bacteria 880
66 Ga0307405_10088608 3300031731 Bacteria 2042
67 Ga0307410_10094337 3300031852 Bacteria 2131
68 Ga0307406_10130601 3300031901 Bacteria 1763
69 Ga0307407_10046672 3300031903 Bacteria 2454
70 Ga0307409_100193078 3300031995 Bacteria 1814
71 Ga0307416_100003635 3300032002 Bacteria 9110
72 Ga0307415_100031768 3300032126 Bacteria 3406
73 Ga0307507_10032570 3300033179 Bacteria 5437
74 Ga0373951_0000045 3300035091 Bacteria 49514
75 Ga0373941_0033502 3300035115 Bacteria 1544
76 Ga0373942_0001076 3300035207 Bacteria 7325
77 Ga0373962_0006338 3300035242 Bacteria 2865
78 Ga0373935_0003205 3300035692 Bacteria 9443
79 Ga0395899_0238316 3300037312 Bacteria 1253
80 Ga0395898_0089521 3300037466 Bacteria 2962
81 Ga0439448_0000559 3300042005 Bacteria 8724
82 Ga0466963_0255563 3300044694 Bacteria 1230
83 Ga0466960_0029701 3300044901 Bacteria 2510
84 Ga0451576_0726446 3300045051 Bacteria 1043
85 Ga0495592_0050750 3300046454 Bacteria 3082
86 Ga0495638_0074963 3300046460 Bacteria 2063
87 Ga0495580_0052465 3300046472 Bacteria 2880
88 Ga0495662_0010426 3300046476 Bacteria 4551
89 Ga0495664_0073074 3300046477 Bacteria 2050
90 Ga0495618_0060396 3300046514 Bacteria 2404
91 Ga0495628_0052755 3300046516 Bacteria 3211
92 Ga0495630_0084407 3300046517 Bacteria 2398
93 Ga0495652_0312389 3300046529 Bacteria 1138
94 Ga0495640_0310854 3300046533 Bacteria 977
95 Ga0495586_0358168 3300046535 Bacteria 838
96 Ga0495645_0033958 3300046543 Bacteria 3721
97 Ga0495667_0070825 3300046559 Bacteria 2274
98 Ga0495634_0034974 3300046642 Bacteria 3444
99 Ga0495657_0528918 3300046675 Bacteria 686
100 Ga0495599_0089901 3300046678 Bacteria 1916
101 Ga0495646_0119259 3300046680 Bacteria 1494
102 Ga0495613_0157149 3300046689 Bacteria 1619
103 Ga0495600_0190170 3300046809 Bacteria 1320
104 Ga0495581_0110827 3300047315 Bacteria 1596
105 Ga0495604_0462598 3300047317 Bacteria 827
106 Ga0495680_0186302 3300047322 Bacteria 1495
107 Ga0495675_0148693 3300047444 Bacteria 1448
108 Ga0495602_0222254 3300048088 Bacteria 1425
109 Ga0496108_0000074 3300048911 Bacteria 108445
110 Ga0496124_0144943 3300048927 Bacteria 1870
111 Ga0501031_0067488 3300049568 Bacteria 2330
112 Ga0501034_0273164 3300049571 Bacteria 1631
113 Ga0501036_0417043 3300049572 Bacteria 1119
114 Ga0501038_0013055 3300049574 Bacteria 7577
115 Ga0501046_0046869 3300049580 Bacteria 3429
116 Ga0501047_0028590 3300049581 Bacteria 5377
117 Ga0501069_0094765 3300049585 Bacteria 1690
118 Ga0501035_0216034 3300049822 Bacteria 1639
119 nmdc:mga05p37_34649_c2 3300050507 Bacteria 3375
120 nmdc:mga05p37_784_c1 3300050507 Bacteria 35360
121 nmdc:mga09592_107577_c1 3300050508 Bacteria 2392
122 nmdc:mga09592_25_c2 3300050508 Bacteria 39915
123 nmdc:mga09592_369816_c1 3300050508 Bacteria 1240
124 nmdc:mga09592_4003_c1 3300050508 Bacteria 11884
125 nmdc:mga0qj67_199_c1 3300050509 Bacteria 27735
126 nmdc:mga0qj67_205000_c1 3300050509 Bacteria 1602
127 nmdc:mga06r32_533542_c1 3300050510 Bacteria 1149
128 nmdc:mga06r32_603_c1 3300050510 Bacteria 19937
129 Ga0495619_0016039 3300053085 Bacteria 4742
130 Ga0500643_012279 3300053087 Bacteria 3073
131 Ga0500559_0057133 3300053136 Bacteria 1733

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046675 Ga0495657_0528918 Ga0495657_0528918_26_583 185
2 3300037312 Ga0395899_0238316 Ga0395899_0238316_423_1187 222
3 3300037466 Ga0395898_0089521 Ga0395898_0089521_303_1067 222
4 3300031548 Ga0307408_100060804 Ga0307408_1000608043 223
5 3300031731 Ga0307405_10088608 Ga0307405_100886082 223
6 3300031852 Ga0307410_10094337 Ga0307410_100943371 223
7 3300032126 Ga0307415_100031768 Ga0307415_1000317682 223
8 3300025917 Ga0207660_10069886 Ga0207660_100698862 225
9 3300031235 Ga0265330_10076932 Ga0265330_100769322 226
10 3300045051 Ga0451576_0726446 Ga0451576_0726446_260_940 226
11 3300046472 Ga0495580_0052465 Ga0495580_0052465_114_794 226
12 3300047317 Ga0495604_0462598 Ga0495604_0462598_124_804 226
13 3300005337 Ga0070682_100021269 Ga0070682_1000212692 227
14 3300005339 Ga0070660_100455046 Ga0070660_1004550462 227
15 3300005344 Ga0070661_100007479 Ga0070661_1000074792 227
16 3300005458 Ga0070681_10225134 Ga0070681_102251342 227
17 3300006028 Ga0070717_10090304 Ga0070717_100903042 227
18 3300020082 Ga0206353_11357054 Ga0206353_113570542 227
19 3300025912 Ga0207707_10063228 Ga0207707_100632284 227
20 3300025920 Ga0207649_10228856 Ga0207649_102288562 227
21 3300025932 Ga0207690_10041962 Ga0207690_100419622 227
22 3300026116 Ga0207674_10061444 Ga0207674_100614442 227
23 3300031344 Ga0265316_10043044 Ga0265316_100430443 227
24 3300031344 Ga0265316_10034036 Ga0265316_100340363 228
25 3300031903 Ga0307407_10046672 Ga0307407_100466722 228
26 3300031995 Ga0307409_100193078 Ga0307409_1001930782 228
27 3300032002 Ga0307416_100003635 Ga0307416_1000036352 228
28 3300031344 Ga0265316_10010154 Ga0265316_100101543 229
29 3300031344 Ga0265316_10264720 Ga0265316_102647201 229
30 3300031344 Ga0265316_10061393 Ga0265316_100613932 230
31 3300031616 Ga0307508_10022052 Ga0307508_100220523 230
32 3300046454 Ga0495592_0050750 Ga0495592_0050750_606_1301 231
33 3300046476 Ga0495662_0010426 Ga0495662_0010426_2164_2859 231
34 3300046477 Ga0495664_0073074 Ga0495664_0073074_341_1036 231
35 3300046514 Ga0495618_0060396 Ga0495618_0060396_23_718 231
36 3300046516 Ga0495628_0052755 Ga0495628_0052755_2455_3150 231
37 3300046517 Ga0495630_0084407 Ga0495630_0084407_1278_1973 231
38 3300046529 Ga0495652_0312389 Ga0495652_0312389_400_1095 231
39 3300046533 Ga0495640_0310854 Ga0495640_0310854_111_806 231
40 3300046535 Ga0495586_0358168 Ga0495586_0358168_98_793 231
41 3300046543 Ga0495645_0033958 Ga0495645_0033958_256_951 231
42 3300046559 Ga0495667_0070825 Ga0495667_0070825_706_1401 231
43 3300046642 Ga0495634_0034974 Ga0495634_0034974_217_912 231
44 3300046678 Ga0495599_0089901 Ga0495599_0089901_1138_1833 231
45 3300046680 Ga0495646_0119259 Ga0495646_0119259_691_1386 231
46 3300046689 Ga0495613_0157149 Ga0495613_0157149_614_1309 231
47 3300046809 Ga0495600_0190170 Ga0495600_0190170_401_1096 231
48 3300047315 Ga0495581_0110827 Ga0495581_0110827_416_1111 231
49 3300047322 Ga0495680_0186302 Ga0495680_0186302_133_828 231
50 3300047444 Ga0495675_0148693 Ga0495675_0148693_23_718 231
51 3300048088 Ga0495602_0222254 Ga0495602_0222254_240_935 231
52 3300031456 Ga0307513_10005858 Ga0307513_1000585819 233
53 3300046460 Ga0495638_0074963 Ga0495638_0074963_957_1715 235
54 3300028794 Ga0307515_10025311 Ga0307515_100253113 237
55 3300031616 Ga0307508_10003917 Ga0307508_1000391716 237
56 3300031730 Ga0307516_10492843 Ga0307516_104928431 238
57 3300048927 Ga0496124_0144943 Ga0496124_0144943_339_1064 238
58 3300030522 Ga0307512_10015335 Ga0307512_100153355 243
59 3300009147 Ga0114129_10017290 Ga0114129_100172906 244
60 3300044901 Ga0466960_0029701 Ga0466960_0029701_1030_1791 247
61 3300053087 Ga0500643_012279 Ga0500643_012279_2086_2829 247
62 iso_pu_bacteria 2964326757 2964328563 247
63 3300006844 Ga0075428_100002085 Ga0075428_10000208512 248
64 3300006846 Ga0075430_100003626 Ga0075430_10000362610 248
65 3300006847 Ga0075431_100007213 Ga0075431_1000072132 248
66 3300006880 Ga0075429_100001362 Ga0075429_10000136210 248
67 3300009147 Ga0114129_10003843 Ga0114129_1000384310 248
68 3300050507 nmdc:mga05p37_784_c1 nmdc:mga05p37_784_c1_15215_15985 248
69 3300050508 nmdc:mga09592_25_c2 nmdc:mga09592_25_c2_31994_32764 248
70 3300050509 nmdc:mga0qj67_199_c1 nmdc:mga0qj67_199_c1_7495_8265 248
71 3300050510 nmdc:mga06r32_603_c1 nmdc:mga06r32_603_c1_7152_7922 248
72 3300005981 Ga0081538_10018997 Ga0081538_100189975 249
73 3300031456 Ga0307513_10119634 Ga0307513_101196342 249
74 3300053136 Ga0500559_0057133 Ga0500559_0057133_453_1202 249
75 iso_pu_bacteria 8046352972 8046353846 249
76 3300005539 Ga0068853_100017987 Ga0068853_1000179874 250
77 3300006846 Ga0075430_100111248 Ga0075430_1001112482 250
78 3300006847 Ga0075431_100070930 Ga0075431_1000709303 250
79 3300006880 Ga0075429_100025196 Ga0075429_1000251967 250
80 3300014968 Ga0157379_10146508 Ga0157379_101465082 250
81 3300025941 Ga0207711_10067659 Ga0207711_100676593 250
82 3300031901 Ga0307406_10130601 Ga0307406_101306012 250
83 3300050507 nmdc:mga05p37_34649_c2 nmdc:mga05p37_34649_c2_1760_2521 250
84 3300050508 nmdc:mga09592_4003_c1 nmdc:mga09592_4003_c1_623_1384 250
85 3300050509 nmdc:mga0qj67_205000_c1 nmdc:mga0qj67_205000_c1_499_1260 250
86 3300050510 nmdc:mga06r32_533542_c1 nmdc:mga06r32_533542_c1_187_948 250
87 3300053085 Ga0495619_0016039 Ga0495619_0016039_174_932 250
88 3300006880 Ga0075429_100378236 Ga0075429_1003782361 251
89 3300044694 Ga0466963_0255563 Ga0466963_0255563_447_1202 251
90 3300050508 nmdc:mga09592_369816_c1 nmdc:mga09592_369816_c1_422_1183 251
91 iso_pu_bacteria 2751185782 2753267147 251
92 3300003320 rootH2_10031309 rootH2_100313092 252
93 3300003792 Ga0055540_1000060 Ga0055540_100006069 252
94 3300005548 Ga0070665_100041028 Ga0070665_1000410282 252
95 3300005985 Ga0081539_10035137 Ga0081539_100351373 252
96 3300006844 Ga0075428_100475103 Ga0075428_1004751032 252
97 3300006880 Ga0075429_100023149 Ga0075429_1000231492 252
98 3300009147 Ga0114129_10005201 Ga0114129_1000520117 252
99 3300009148 Ga0105243_10352293 Ga0105243_103522931 252
100 3300025303 Ga0209051_1000149 Ga0209051_100014970 252
101 3300026095 Ga0207676_10190803 Ga0207676_101908032 252
102 3300028379 Ga0268266_10424007 Ga0268266_104240072 252
103 3300035091 Ga0373951_0000045 Ga0373951_0000045_6727_7485 252
104 3300035692 Ga0373935_0003205 Ga0373935_0003205_4969_5727 252
105 3300042005 Ga0439448_0000559 Ga0439448_0000559_6911_7669 252
106 3300049568 Ga0501031_0067488 Ga0501031_0067488_711_1481 252
107 3300049572 Ga0501036_0417043 Ga0501036_0417043_95_865 252
108 3300049574 Ga0501038_0013055 Ga0501038_0013055_3143_3913 252
109 3300049580 Ga0501046_0046869 Ga0501046_0046869_141_911 252
110 3300049581 Ga0501047_0028590 Ga0501047_0028590_2137_2907 252
111 3300049585 Ga0501069_0094765 Ga0501069_0094765_25_795 252
112 3300049822 Ga0501035_0216034 Ga0501035_0216034_627_1397 252
113 3300050508 nmdc:mga09592_107577_c1 nmdc:mga09592_107577_c1_589_1368 252
114 iso_pu_bacteria 2842849001 2842849057 252
115 iso_pu_bacteria 8055157932 8055161729 252
116 3300033179 Ga0307507_10032570 Ga0307507_100325704 253
117 3300048911 Ga0496108_0000074 Ga0496108_0000074_19961_20728 253
118 3300049571 Ga0501034_0273164 Ga0501034_0273164_71_835 253
119 3300005983 Ga0081540_1074028 Ga0081540_10740282 254
120 3300005331 Ga0070670_100294039 Ga0070670_1002940392 255
121 3300005347 Ga0070668_100002517 Ga0070668_10000251715 255
122 3300005367 Ga0070667_100131844 Ga0070667_1001318442 255
123 3300005843 Ga0068860_100110910 Ga0068860_1001109102 255
124 3300005844 Ga0068862_100012227 Ga0068862_1000122273 255
125 3300013297 Ga0157378_10460441 Ga0157378_104604411 255
126 3300014325 Ga0163163_10292253 Ga0163163_102922532 255
127 3300014968 Ga0157379_10079457 Ga0157379_100794573 255
128 3300025972 Ga0207668_10012261 Ga0207668_100122612 255
129 3300026035 Ga0207703_10397150 Ga0207703_103971502 255
130 3300028380 Ga0268265_10040600 Ga0268265_100406002 255
131 3300031507 Ga0307509_10005707 Ga0307509_1000570710 255
132 3300035242 Ga0373962_0006338 Ga0373962_0006338_281_1087 255
133 2162886011 MRS1b_contig_8685489 MRS1b_0418.00000150 256
134 3300031616 Ga0307508_10050524 Ga0307508_100505242 256
135 3300035115 Ga0373941_0033502 Ga0373941_0033502_557_1363 256
136 3300035207 Ga0373942_0001076 Ga0373942_0001076_561_1367 256

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03746

LamB_YcsF

LamB/YcsF family

4

242

1

Structural Annotation

Top 5 Hits

ID Description Score Start End
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.9687 1 255
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.9649 1 255
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.9605 1 251
2xu2-assembly1.cif.gz_A crystal structure of the hypothetical protein pa4511 from pseudomonas aeruginosa 0.9598 4 239
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.9567 1 251
ID Description Score Start End Superfamily
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.969 1 251 3.20.20.370
1v6tA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9687 1 255 3.20.20.370
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9653 1 251 3.20.20.370
1v6tA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9649 1 255 3.20.20.370
2dfaA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9605 1 251 3.20.20.370
ID Description Score Start End GO Terms
AF-A0A0P9HZZ0-F1-model_v4 LamB/YcsF protein 0.9971 1 254 GO:0005975
AF-A0A3M4QWR8-F1-model_v4 deleted 0.997 1 251
AF-A0A1M3BYP8-F1-model_v4 deleted 0.9967 4 251
AF-A0A497VK27-F1-model_v4 5-oxoprolinase subunit A (5-OPase subunit A) (EC 3.5.2.9) (5-oxoprolinase (ATP-hydrolyzing) subunit A) 0.9953 1 251 GO:0005524
GO:0005975
GO:0017168
AF-A0A4Q3HSY8-F1-model_v4 deleted 0.995 48 251

Feature Viewer

pLDDT pTM Quality
93.38 0.91 High
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Predicted Structure (AlphaFold2)

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