F165186

General Info

Members Datasets Scaffolds Average Seq Length
136 96 135 490

Family's Representative Sequence

Representative Sequence 3300003323|rootH1_10034129|rootH1_100341295
Length 549
Sequence MCPSPSLPSSTPKPSAIPPTQGGPTEAARRGGPHGSAPPPRHGALLTDLYQLTMAQGYFLTGRADPRAPDEAVFHLFFRKLPFGGGYAVAAGLEEAVAYLRDFAFDADDCAYLASLQGDDGRPLFQAAFLDYLRTLRLALDVDAIPEGALVFAHEPLLRVKGPLLHAQIVETALLNVINFSTLVATKAARICEAAKGKPVLEFGLRRAQGPDGALTASRAAFLGGCGATSNVLAGQRFGIPVRGTHAHSWVMSFDSEAEAFAAYGDAVPNASVFLVDTYDTLAGVEHAIEAGKRLRARGHDLGGIRLDSGDLAWLSCEARRRLDAAGFSSARIVASNDLDEHLIESLHLQGAAIDVFGVGTKLVTCADSPALGGVYKLAAVRRWGEDWKPRVKLSEQPAKTSIPGVLKVLRFRDPATGRLLADAICEETTEREAVTAIVDPTDPLRRRALAPTLVAEPLLVPVLRSGEPVGSLPSLVEARARAASELAALSPSTRRLQNPHTYPVGLETRLAEKRLALVAEARLKEGGEGSGDEGRAIGAEVRAAGGRP

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
45 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
48 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
49 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
53 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
54 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
55 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
58 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
59 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
60 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
61 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
68 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
73 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
74 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
79 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
80 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
81 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
82 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
83 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
89 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
90 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
91 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
92 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
93 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
94 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
95 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
96 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.26
Metatranscriptomes 0
Isolates 0.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.47
Nodule 0
Rhizoplane 0.74
Rhizosphere 94.12
Stem 0
Stem Tuber 0
Unclassified 3.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10116143 3300003320 Bacteria 2142
2 rootH1_10033787 3300003323 Bacteria 6623
3 rootH1_10034129 3300003323 Bacteria 5968
4 Ga0065704_10071818 3300005289 Bacteria 9853
5 Ga0065712_10069369 3300005290 Bacteria 7435
6 Ga0070658_10029386 3300005327 Bacteria 4415
7 Ga0070666_10003615 3300005335 Bacteria 9376
8 Ga0070689_100005843 3300005340 Bacteria 8453
9 Ga0070675_100038430 3300005354 Bacteria 3900
10 Ga0070675_100040875 3300005354 Bacteria 3787
11 Ga0070688_100034929 3300005365 Bacteria 3050
12 Ga0070667_100056359 3300005367 Unclassified 3320
13 Ga0070708_100050554 3300005445 Bacteria 3681
14 Ga0070706_100053880 3300005467 Bacteria 3713
15 Ga0070706_100093617 3300005467 Bacteria 2788
16 Ga0070707_100127346 3300005468 Bacteria 2474
17 Ga0070697_100075392 3300005536 Bacteria 2773
18 Ga0068853_100000001 3300005539 Bacteria 715840
19 Ga0068855_100006356 3300005563 Bacteria 14400
20 Ga0068855_100079060 3300005563 Bacteria 3815
21 Ga0068857_100014817 3300005577 Bacteria 6800
22 Ga0068862_100003961 3300005844 Bacteria 12579
23 Ga0068862_100062926 3300005844 Unclassified 3192
24 Ga0081538_10041073 3300005981 Bacteria 2941
25 Ga0070717_10029871 3300006028 Bacteria 4378
26 Ga0075430_100019643 3300006846 Bacteria 5747
27 Ga0075433_10006223 3300006852 Bacteria 9416
28 Ga0075434_100065095 3300006871 Bacteria 3630
29 Ga0075434_100217032 3300006871 Bacteria 1933
30 Ga0075436_100009504 3300006914 Bacteria 6651
31 Ga0075436_100036124 3300006914 Bacteria 3410
32 Ga0105240_10000023 3300009093 Bacteria 385028
33 Ga0105240_10000366 3300009093 Bacteria 84785
34 Ga0105245_10119054 3300009098 Bacteria 2465
35 Ga0114129_10000568 3300009147 Bacteria 45423
36 Ga0114129_10175597 3300009147 Bacteria 2918
37 Ga0114129_10224061 3300009147 Bacteria 2535
38 Ga0105241_10047964 3300009174 Bacteria 3249
39 Ga0105237_10124605 3300009545 Bacteria 2571
40 Ga0105239_10000532 3300010375 Bacteria 55105
41 Ga0105239_10090823 3300010375 Bacteria 3369
42 Ga0157373_10000471 3300013100 Bacteria 31950
43 Ga0157369_10148460 3300013105 Bacteria 2479
44 Ga0157374_10109527 3300013296 Bacteria 2655
45 Ga0209050_1001387 3300025298 Bacteria 26398
46 Ga0207695_10000184 3300025913 Bacteria 181201
47 Ga0207646_10061946 3300025922 Bacteria 3339
48 Ga0207659_10023128 3300025926 Bacteria 4145
49 Ga0207670_10085403 3300025936 Bacteria 2218
50 Ga0207667_10006433 3300025949 Bacteria 14226
51 Ga0207651_10076500 3300025960 Bacteria 2393
52 Ga0207658_10014574 3300025986 Bacteria 5383
53 Ga0207674_10007481 3300026116 Bacteria 12731
54 Ga0207428_10008021 3300027907 Bacteria 9582
55 Ga0268265_10001230 3300028380 Bacteria 22158
56 Ga0268265_10062660 3300028380 Unclassified 2858
57 Ga0265338_10003939 3300028800 Bacteria 20451
58 Ga0265324_10005046 3300029957 Bacteria 5789
59 Ga0265330_10000339 3300031235 Bacteria 33381
60 Ga0265339_10038039 3300031249 Bacteria 2686
61 Ga0265327_10001491 3300031251 Bacteria 29110
62 Ga0265316_10000272 3300031344 Bacteria 58100
63 Ga0265316_10021576 3300031344 Bacteria 5450
64 Ga0307508_10008604 3300031616 Bacteria 9424
65 Ga0265314_10001045 3300031711 Bacteria 32296
66 Ga0265314_10005780 3300031711 Bacteria 11099
67 Ga0265314_10037993 3300031711 Bacteria 3483
68 Ga0265342_10052271 3300031712 Bacteria 2436
69 Ga0316577_10002855 3300031733 Bacteria 8639
70 Ga0316577_10006387 3300031733 Bacteria 6220
71 Ga0307410_10026824 3300031852 Bacteria 3632
72 Ga0307410_10186158 3300031852 Bacteria 1576
73 Ga0307409_100032783 3300031995 Bacteria 3772
74 Ga0373929_0000002 3300035085 Bacteria 683932
75 Ga0373961_0001335 3300035241 Bacteria 7422
76 Ga0373935_0013055 3300035692 Bacteria 5008
77 Ga0373937_0138366 3300036401 Bacteria 2277
78 Ga0316582_0024892 3300036647 Bacteria 3587
79 Ga0316582_0041201 3300036647 Bacteria 2885
80 Ga0316584_0011066 3300036712 Bacteria 6325
81 Ga0373925_0000271 3300037068 Bacteria 54187
82 Ga0373925_0206866 3300037068 Bacteria 1562
83 Ga0395905_0002995 3300037471 Bacteria 18319
84 Ga0395905_0052573 3300037471 Bacteria 3813
85 Ga0395901_0114910 3300038443 Bacteria 2827
86 Ga0451577_0000792 3300042876 Bacteria 47614
87 Ga0451577_0033569 3300042876 Bacteria 4627
88 Ga0451577_0048391 3300042876 Bacteria 3798
89 Ga0451577_0074620 3300042876 Bacteria 3024
90 Ga0453683_0000539 3300044673 Bacteria 42191
91 Ga0453684_0000115 3300044712 Bacteria 355501
92 Ga0453684_0000216 3300044712 Bacteria 250915
93 Ga0453684_0001474 3300044712 Bacteria 66374
94 Ga0453684_0008010 3300044712 Bacteria 19129
95 Ga0453684_0008426 3300044712 Bacteria 18468
96 Ga0453684_0014443 3300044712 Bacteria 12632
97 Ga0453684_0015080 3300044712 Bacteria 12264
98 Ga0453684_0031437 3300044712 Bacteria 7461
99 Ga0453684_0055812 3300044712 Bacteria 5131
100 Ga0453684_0158611 3300044712 Bacteria 2679
101 Ga0466957_0000924 3300044842 Bacteria 15033
102 Ga0451576_0000163 3300045051 Bacteria 170072
103 Ga0451576_0005033 3300045051 Bacteria 16783
104 Ga0451576_0108874 3300045051 Bacteria 2883
105 Ga0495636_0020084 3300047318 Bacteria 2690
106 Ga0496114_0000106 3300048917 Bacteria 60535
107 Ga0501031_0002047 3300049568 Bacteria 12682
108 Ga0501034_0000479 3300049571 Bacteria 65707
109 Ga0501034_0004927 3300049571 Bacteria 14705
110 Ga0501043_0001036 3300049579 Bacteria 24402
111 Ga0501047_0000900 3300049581 Bacteria 30326
112 Ga0501047_0091592 3300049581 Bacteria 2919
113 Ga0501070_0001229 3300049586 Bacteria 22932
114 Ga0501073_0006951 3300049589 Bacteria 8425
115 Ga0501075_0001049 3300049591 Bacteria 17757
116 Ga0501077_0005117 3300049593 Bacteria 7960
117 Ga0501227_000848 3300049665 Bacteria 6660
118 Ga0501080_0016709 3300049742 Bacteria 6775
119 Ga0501080_0044525 3300049742 Bacteria 4131
120 Ga0501080_0110289 3300049742 Bacteria 2550
121 Ga0501035_0000001 3300049822 Bacteria 1037138
122 nmdc:mga05p37_90730_c1 3300050507 Bacteria 3765
123 nmdc:mga05p37_9344_c1 3300050507 Bacteria 4274
124 nmdc:mga09592_114737_c1 3300050508 Bacteria 2312
125 nmdc:mga0qj67_18176_c1 3300050509 Bacteria 5356
126 nmdc:mga08y16_110258_c1 3300050511 Bacteria 2866
127 nmdc:mga0n895_30791_c1 3300050512 Bacteria 5132
128 nmdc:mga0rr50_32488_c1 3300050513 Bacteria 3719
129 nmdc:mga08x19_4103_c1 3300050514 Bacteria 8642
130 nmdc:mga08x19_9003_c1 3300050514 Bacteria 5961
131 nmdc:mga0a205_48343_c1 3300050515 Bacteria 4106
132 Ga0500555_004160 3300053103 Bacteria 4119
133 Ga0501084_0013957 3300054114 Bacteria 6649
134 Ga0501082_0001016 3300060353 Bacteria 24799
135 Ga0530510_0060674 3300061734 Bacteria 2737

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044842 Ga0466957_0000924 Ga0466957_0000924_10607_12016 432
2 3300049581 Ga0501047_0091592 Ga0501047_0091592_68_1486 436
3 3300047318 Ga0495636_0020084 Ga0495636_0020084_662_2005 437
4 3300036647 Ga0316582_0024892 Ga0316582_0024892_963_2432 445
5 3300005467 Ga0070706_100053880 Ga0070706_1000538801 452
6 3300044712 Ga0453684_0031437 Ga0453684_0031437_5105_6583 459
7 3300042876 Ga0451577_0048391 Ga0451577_0048391_331_1809 460
8 3300044712 Ga0453684_0008010 Ga0453684_0008010_10327_11805 460
9 3300044712 Ga0453684_0014443 Ga0453684_0014443_7897_9375 460
10 3300044712 Ga0453684_0055812 Ga0453684_0055812_2861_4339 460
11 3300009093 Ga0105240_10000023 Ga0105240_1000002392 461
12 3300009093 Ga0105240_10000366 Ga0105240_1000036613 461
13 3300010375 Ga0105239_10000532 Ga0105239_1000053227 461
14 3300025913 Ga0207695_10000184 Ga0207695_1000018488 461
15 3300045051 Ga0451576_0005033 Ga0451576_0005033_4603_6114 461
16 3300045051 Ga0451576_0000163 Ga0451576_0000163_47403_48920 463
17 3300005563 Ga0068855_100006356 Ga0068855_10000635612 464
18 3300025949 Ga0207667_10006433 Ga0207667_100064335 464
19 3300037068 Ga0373925_0206866 Ga0373925_0206866_43_1464 464
20 3300053103 Ga0500555_004160 Ga0500555_004160_2155_3798 464
21 3300054114 Ga0501084_0013957 Ga0501084_0013957_4286_5695 464
22 3300005365 Ga0070688_100034929 Ga0070688_1000349291 465
23 3300035692 Ga0373935_0013055 Ga0373935_0013055_2527_4020 465
24 3300038443 Ga0395901_0114910 Ga0395901_0114910_333_1853 465
25 3300013100 Ga0157373_10000471 Ga0157373_100004716 467
26 3300031251 Ga0265327_10001491 Ga0265327_1000149112 469
27 3300031733 Ga0316577_10002855 Ga0316577_100028552 469
28 3300036712 Ga0316584_0011066 Ga0316584_0011066_2263_3732 469
29 3300049665 Ga0501227_000848 Ga0501227_000848_1637_3085 469
30 3300031235 Ga0265330_10000339 Ga0265330_1000033918 470
31 3300031344 Ga0265316_10021576 Ga0265316_100215765 470
32 3300031712 Ga0265342_10052271 Ga0265342_100522712 470
33 3300005340 Ga0070689_100005843 Ga0070689_1000058432 471
34 3300005445 Ga0070708_100050554 Ga0070708_1000505542 471
35 3300005467 Ga0070706_100093617 Ga0070706_1000936172 471
36 3300005468 Ga0070707_100127346 Ga0070707_1001273462 471
37 3300005536 Ga0070697_100075392 Ga0070697_1000753922 471
38 3300025922 Ga0207646_10061946 Ga0207646_100619462 471
39 3300035085 Ga0373929_0000002 Ga0373929_0000002_618971_620467 471
40 3300044712 Ga0453684_0158611 Ga0453684_0158611_1083_2525 475
41 3300005289 Ga0065704_10071818 Ga0065704_100718184 476
42 3300005539 Ga0068853_100000001 Ga0068853_10000000195 476
43 3300006028 Ga0070717_10029871 Ga0070717_100298715 476
44 3300025298 Ga0209050_1001387 Ga0209050_100138716 476
45 3300025936 Ga0207670_10085403 Ga0207670_100854032 476
46 3300025960 Ga0207651_10076500 Ga0207651_100765002 476
47 3300037471 Ga0395905_0052573 Ga0395905_0052573_1023_2504 476
48 3300042876 Ga0451577_0074620 Ga0451577_0074620_1185_2657 476
49 3300044712 Ga0453684_0001474 Ga0453684_0001474_8291_9733 476
50 3300044712 Ga0453684_0008426 Ga0453684_0008426_16487_17959 476
51 3300049571 Ga0501034_0000479 Ga0501034_0000479_46339_47808 476
52 3300049589 Ga0501073_0006951 Ga0501073_0006951_3681_5123 476
53 3300049742 Ga0501080_0016709 Ga0501080_0016709_5250_6701 476
54 3300049742 Ga0501080_0110289 Ga0501080_0110289_151_1593 476
55 3300003320 rootH2_10116143 rootH2_101161432 477
56 3300003323 rootH1_10033787 rootH1_100337876 477
57 3300003323 rootH1_10034129 rootH1_100341295 477
58 3300005290 Ga0065712_10069369 Ga0065712_100693695 477
59 3300005327 Ga0070658_10029386 Ga0070658_100293865 477
60 3300005335 Ga0070666_10003615 Ga0070666_100036157 477
61 3300005354 Ga0070675_100038430 Ga0070675_1000384305 477
62 3300005354 Ga0070675_100040875 Ga0070675_1000408751 477
63 3300005367 Ga0070667_100056359 Ga0070667_1000563592 477
64 3300005563 Ga0068855_100079060 Ga0068855_1000790602 477
65 3300005577 Ga0068857_100014817 Ga0068857_1000148172 477
66 3300005844 Ga0068862_100003961 Ga0068862_1000039613 477
67 3300005844 Ga0068862_100062926 Ga0068862_1000629262 477
68 3300005981 Ga0081538_10041073 Ga0081538_100410732 477
69 3300006846 Ga0075430_100019643 Ga0075430_1000196434 477
70 3300006852 Ga0075433_10006223 Ga0075433_100062233 477
71 3300006871 Ga0075434_100065095 Ga0075434_1000650952 477
72 3300006871 Ga0075434_100217032 Ga0075434_1002170322 477
73 3300006914 Ga0075436_100009504 Ga0075436_1000095044 477
74 3300006914 Ga0075436_100036124 Ga0075436_1000361243 477
75 3300009098 Ga0105245_10119054 Ga0105245_101190542 477
76 3300009147 Ga0114129_10000568 Ga0114129_1000056844 477
77 3300009147 Ga0114129_10175597 Ga0114129_101755972 477
78 3300009147 Ga0114129_10224061 Ga0114129_102240612 477
79 3300009174 Ga0105241_10047964 Ga0105241_100479642 477
80 3300009545 Ga0105237_10124605 Ga0105237_101246052 477
81 3300010375 Ga0105239_10090823 Ga0105239_100908233 477
82 3300013105 Ga0157369_10148460 Ga0157369_101484602 477
83 3300013296 Ga0157374_10109527 Ga0157374_101095271 477
84 3300025926 Ga0207659_10023128 Ga0207659_100231284 477
85 3300025986 Ga0207658_10014574 Ga0207658_100145743 477
86 3300026116 Ga0207674_10007481 Ga0207674_100074813 477
87 3300027907 Ga0207428_10008021 Ga0207428_100080213 477
88 3300028380 Ga0268265_10001230 Ga0268265_1000123017 477
89 3300028380 Ga0268265_10062660 Ga0268265_100626602 477
90 3300028800 Ga0265338_10003939 Ga0265338_100039397 477
91 3300029957 Ga0265324_10005046 Ga0265324_100050463 477
92 3300031249 Ga0265339_10038039 Ga0265339_100380392 477
93 3300031344 Ga0265316_10000272 Ga0265316_1000027235 477
94 3300031616 Ga0307508_10008604 Ga0307508_100086046 477
95 3300031711 Ga0265314_10001045 Ga0265314_1000104522 477
96 3300031711 Ga0265314_10005780 Ga0265314_100057806 477
97 3300031711 Ga0265314_10037993 Ga0265314_100379932 477
98 3300031733 Ga0316577_10006387 Ga0316577_100063872 477
99 3300031852 Ga0307410_10026824 Ga0307410_100268242 477
100 3300031852 Ga0307410_10186158 Ga0307410_101861581 477
101 3300031995 Ga0307409_100032783 Ga0307409_1000327837 477
102 3300035241 Ga0373961_0001335 Ga0373961_0001335_5748_7265 477
103 3300036401 Ga0373937_0138366 Ga0373937_0138366_355_1806 477
104 3300036647 Ga0316582_0041201 Ga0316582_0041201_691_2238 477
105 3300037068 Ga0373925_0000271 Ga0373925_0000271_24189_25658 477
106 3300037471 Ga0395905_0002995 Ga0395905_0002995_12726_14207 477
107 3300042876 Ga0451577_0000792 Ga0451577_0000792_40515_42002 477
108 3300042876 Ga0451577_0033569 Ga0451577_0033569_577_2073 477
109 3300044673 Ga0453683_0000539 Ga0453683_0000539_727_2226 477
110 3300044712 Ga0453684_0000115 Ga0453684_0000115_250000_251496 477
111 3300044712 Ga0453684_0000216 Ga0453684_0000216_163140_164627 477
112 3300044712 Ga0453684_0015080 Ga0453684_0015080_7262_8740 477
113 3300045051 Ga0451576_0108874 Ga0451576_0108874_1351_2850 477
114 3300048917 Ga0496114_0000106 Ga0496114_0000106_12024_13508 477
115 3300049568 Ga0501031_0002047 Ga0501031_0002047_5169_6656 477
116 3300049571 Ga0501034_0004927 Ga0501034_0004927_2121_3611 477
117 3300049579 Ga0501043_0001036 Ga0501043_0001036_5657_7144 477
118 3300049581 Ga0501047_0000900 Ga0501047_0000900_9644_11131 477
119 3300049586 Ga0501070_0001229 Ga0501070_0001229_1650_3137 477
120 3300049591 Ga0501075_0001049 Ga0501075_0001049_10866_12341 477
121 3300049593 Ga0501077_0005117 Ga0501077_0005117_5425_6900 477
122 3300049742 Ga0501080_0044525 Ga0501080_0044525_1685_3160 477
123 3300049822 Ga0501035_0000001 Ga0501035_0000001_607600_609087 477
124 3300050507 nmdc:mga05p37_90730_c1 nmdc:mga05p37_90730_c1_199_1671 477
125 3300050507 nmdc:mga05p37_9344_c1 nmdc:mga05p37_9344_c1_311_1792 477
126 3300050508 nmdc:mga09592_114737_c1 nmdc:mga09592_114737_c1_564_2036 477
127 3300050509 nmdc:mga0qj67_18176_c1 nmdc:mga0qj67_18176_c1_1447_2982 477
128 3300050511 nmdc:mga08y16_110258_c1 nmdc:mga08y16_110258_c1_1350_2822 477
129 3300050512 nmdc:mga0n895_30791_c1 nmdc:mga0n895_30791_c1_357_1841 477
130 3300050513 nmdc:mga0rr50_32488_c1 nmdc:mga0rr50_32488_c1_871_2352 477
131 3300050514 nmdc:mga08x19_4103_c1 nmdc:mga08x19_4103_c1_6172_7689 477
132 3300050514 nmdc:mga08x19_9003_c1 nmdc:mga08x19_9003_c1_477_1961 477
133 3300050515 nmdc:mga0a205_48343_c1 nmdc:mga0a205_48343_c1_2539_4020 477
134 3300060353 Ga0501082_0001016 Ga0501082_0001016_2727_4202 477
135 3300061734 Ga0530510_0060674 Ga0530510_0060674_107_1597 477
136 iso_pu_bacteria 2786546940 2788433885 477

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17767

NAPRTase_N

Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain

45

179

0.94

PF17956

NAPRTase_C

Nicotinate phosphoribosyltransferase C-terminal domain

407

515

0.91

PF04095

NAPRTase

Nicotinate phosphoribosyltransferase (NAPRTase) family

199

428

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mzy-assembly1.cif.gz_A crystal structure of enterococcus faecalis nicotinate phosphoribosyltransferase with malonate and phosphate bound 0.9528 5 477
4mzy-assembly1.cif.gz_A crystal structure of enterococcus faecalis nicotinate phosphoribosyltransferase with malonate and phosphate bound 0.9353 5 477
2i14-assembly1.cif.gz_A crystal structure of nicotinate-nucleotide pyrophosphorylase from pyrococcus furiosus 0.8931 7 443
2i1o-assembly1.cif.gz_A crystal structure of a nicotinate phosphoribosyltransferase from thermoplasma acidophilum 0.8669 4 443
4yub-assembly1.cif.gz_A crystal structure of human nicotinic acid phosphoribosyltransferase 0.8601 7 472
ID Description Score Start End Superfamily
af_Q851M0_172_232_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9819 155 210 3.20.140.10
af_C0PHJ7_17_175_3.90.1170.20 Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Quinolinate phosphoribosyl transferase, N-terminal domain 0.9691 1 146 3.90.1170.20
af_P9WJI7_150_316_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9658 153 319 3.20.140.10
af_Q95XX1_282_400_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9599 211 317 3.20.140.10
af_A0A1D6EAS2_7_107_3.20.140.10 Alpha Beta;Alpha-Beta Barrel;nicotinate phosphoribosyltransferase;nicotinate phosphoribosyltransferase 0.9555 235 317 3.20.140.10
ID Description Score Start End GO Terms
AF-A0A355GE80-F1-model_v4 Nicotinate phosphoribosyltransferase 0.996 4 155 GO:0004516
GO:0005829
GO:0016757
GO:0034355
AF-A0A7J5WE25-F1-model_v4 Nicotinate 0.9951 2 134 GO:0004516
GO:0005829
GO:0034355
AF-A0A3A0G4T0-F1-model_v4 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) 0.9939 120 336 GO:0004516
GO:0005829
GO:0016757
GO:0034355
AF-A0A7V3NAP9-F1-model_v4 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) 0.9923 14 263 GO:0004516
GO:0005829
GO:0016757
GO:0034355
AF-K2AUR3-F1-model_v4 nicotinate phosphoribosyltransferase (EC 6.3.4.21) 0.9896 3 186 GO:0004516
GO:0005829
GO:0016757
GO:0034355

Feature Viewer

pLDDT pTM Quality
95 0.94 High
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Predicted Structure (AlphaFold2)

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