F164023

General Info

Members Datasets Scaffolds Average Seq Length
135 92 270 317

Family's Representative Sequence

Representative Sequence 3300039110|Ga0400487_45297|Ga0400487_45297_346_1503
Length 385
Sequence MYHIFDISECFDPGHPGPATNRYPDICQYVGILAVPQKFHHNINIIPERTSCMLNRKLSVAPMLDWTDRYCRYFLRLISKHVVLYTEMVTTGALLHGDRARFLDFDPAEHPVALQLGGSDPHELAECAQFGSQWGYDEINLNVGCPSDRVQSGRFGACLMITPELVADCVKAMRDRITIDVTVKHRIGVDDHDSYQALCDFVGTVSEAGCRTFIVHARKAWLQGLSPKQNREIPPLSYETVHNLKSDFPDLEVIINGGITNLDQVSEQLDHVDGVMIGREAYHNPWILAEADQLIFGQSEPALTRHQVVELLIPFVEVELTQGTPINRISRHILGLFQGQPGARKWRRVLSEGSHLAGADSGLLRRAVTQIVEAADRCGEPHPTS

Samples

Sample ID Description Type Environment
1 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
27 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
28 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
33 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
34 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
49 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
51 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
52 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
53 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
54 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
55 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
56 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
57 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
58 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
59 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
62 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
63 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
64 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
65 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
66 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
67 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
68 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
71 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
72 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
75 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
76 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
77 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
78 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
81 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
82 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
83 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
84 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
85 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
86 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
87 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
88 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
89 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
90 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
91 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
92 8056177738 Pseudomonas azerbaijanoccidentalis SWRI74 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.04
Metatranscriptomes 0
Isolates 2.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 68.15
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400487_45297 3300039110 Bacteria 1859
2 Ga0070690_100023320 3300005330 Bacteria 3795
3 Ga0068869_100036663 3300005334 Bacteria 3482
4 Ga0070680_100024456 3300005336 Bacteria 4825
5 Ga0070692_10005500 3300005345 Bacteria 5411
6 Ga0070668_100035360 3300005347 Bacteria 3810
7 Ga0070669_100001351 3300005353 Bacteria 17665
8 Ga0070674_100025851 3300005356 Bacteria 3827
9 Ga0070673_100140898 3300005364 Bacteria 2034
10 Ga0070705_100232480 3300005440 Bacteria 1284
11 Ga0070700_100000224 3300005441 Bacteria 31445
12 Ga0070681_10002103 3300005458 Bacteria 18084
13 Ga0068867_100000270 3300005459 Bacteria 34109
14 Ga0070679_100071159 3300005530 Bacteria 3469
15 Ga0070697_100001628 3300005536 Bacteria 17102
16 Ga0070695_100008017 3300005545 Bacteria 6259
17 Ga0070696_100020012 3300005546 Bacteria 4537
18 Ga0070696_100040164 3300005546 Bacteria 3230
19 Ga0070704_100013063 3300005549 Bacteria 5143
20 Ga0070704_100028108 3300005549 Bacteria 3738
21 Ga0068861_100000220 3300005719 Bacteria 30851
22 Ga0068863_100161515 3300005841 Bacteria 2147
23 Ga0068862_100000812 3300005844 Bacteria 31007
24 Ga0081539_10000468 3300005985 Bacteria 85386
25 Ga0070712_100041458 3300006175 Bacteria 3161
26 Ga0075433_10354386 3300006852 Bacteria 1297
27 Ga0075434_100211697 3300006871 Bacteria 1958
28 Ga0075434_100300571 3300006871 Bacteria 1625
29 Ga0068865_100016091 3300006881 Bacteria 4777
30 Ga0075436_100010042 3300006914 Bacteria 6478
31 Ga0075435_100146754 3300007076 Bacteria 1982
32 Ga0111539_10205451 3300009094 Bacteria 2296
33 Ga0111539_10299765 3300009094 Bacteria 1871
34 Ga0114129_10512936 3300009147 Bacteria 1564
35 Ga0105243_10022757 3300009148 Bacteria 4765
36 Ga0105243_10105594 3300009148 Bacteria 2346
37 Ga0157380_10002104 3300014326 Bacteria 13348
38 Ga0209026_1002549 3300025250 Bacteria 6732
39 Ga0207655_1000094 3300025728 Bacteria 196748
40 Ga0207713_1004826 3300025735 Bacteria 8649
41 Ga0207645_10148930 3300025907 Bacteria 1527
42 Ga0207707_10003773 3300025912 Bacteria 13429
43 Ga0207693_10026655 3300025915 Bacteria 4573
44 Ga0207681_10000804 3300025923 Bacteria 20670
45 Ga0207664_10091024 3300025929 Bacteria 2500
46 Ga0207709_10072067 3300025935 Bacteria 2196
47 Ga0207704_10084843 3300025938 Bacteria 2060
48 Ga0207712_10003033 3300025961 Bacteria 10720
49 Ga0207668_10014627 3300025972 Bacteria 4859
50 Ga0207708_10000876 3300026075 Bacteria 22666
51 Ga0207648_10000639 3300026089 Bacteria 39306
52 Ga0207675_100004706 3300026118 Bacteria 13136
53 Ga0207675_100136163 3300026118 Bacteria 2331
54 Ga0207428_10015093 3300027907 Bacteria 6689
55 Ga0268265_10001259 3300028380 Bacteria 21863
56 Ga0307513_10027523 3300031456 Bacteria 6527
57 Ga0316579_10023078 3300031691 Bacteria 2789
58 Ga0316576_10135186 3300031727 Bacteria 1855
59 Ga0307411_10086241 3300032005 Bacteria 2178
60 Ga0316583_10007558 3300032133 Bacteria 3914
61 Ga0316585_10003100 3300032137 Bacteria 4537
62 Ga0373960_0037708 3300035121 Bacteria 1382
63 Ga0373961_0024537 3300035241 Bacteria 1632
64 Ga0373931_0010346 3300035691 Bacteria 4483
65 Ga0316582_0044639 3300036647 Bacteria 2787
66 Ga0316582_0063313 3300036647 Bacteria 2376
67 Ga0395900_0001505 3300037418 Bacteria 27687
68 Ga0400484_15405 3300038725 Bacteria 3177
69 Ga0400484_16593 3300038725 Bacteria 13762
70 Ga0400484_24354 3300038725 Bacteria 12656
71 Ga0400484_28997 3300038725 Bacteria 3046
72 Ga0400484_41882 3300038725 Bacteria 15247
73 Ga0400490_01327 3300038726 Bacteria 5465
74 Ga0400490_03820 3300038726 Bacteria 47864
75 Ga0400490_13045 3300038726 Bacteria 10461
76 Ga0400490_17222 3300038726 Bacteria 34532
77 Ga0400491_21195 3300038727 Bacteria 6472
78 Ga0400491_28156 3300038727 Bacteria 4669
79 Ga0400485_07875 3300038735 Bacteria 17244
80 Ga0400488_19440 3300038741 Bacteria 9240
81 Ga0400488_25340 3300038741 Bacteria 6765
82 Ga0400488_37581 3300038741 Bacteria 5310
83 Ga0400488_50743 3300038741 Bacteria 3887
84 Ga0400486_10928 3300038742 Bacteria 17299
85 Ga0400483_014581 3300039062 Bacteria 1390
86 Ga0400483_031120 3300039062 Bacteria 3526
87 Ga0400483_032133 3300039062 Bacteria 4022
88 Ga0400483_082458 3300039062 Bacteria 8811
89 Ga0400483_105581 3300039062 Bacteria 6411
90 Ga0400483_188387 3300039062 Bacteria 1580
91 Ga0400483_190338 3300039062 Bacteria 36405
92 Ga0400483_211744 3300039062 Bacteria 8385
93 Ga0400483_255057 3300039062 Bacteria 16218
94 Ga0400483_283814 3300039062 Bacteria 4667
95 Ga0400489_71891 3300039093 Bacteria 3477
96 Ga0400487_02166 3300039110 Bacteria 1346
97 Ga0400487_16818 3300039110 Bacteria 2419
98 Ga0400487_27800 3300039110 Bacteria 73851
99 Ga0400487_42501 3300039110 Bacteria 4540
100 Ga0400487_44314 3300039110 Bacteria 6401
101 Ga0400487_54544 3300039110 Bacteria 6338
102 Ga0400487_55369 3300039110 Bacteria 86531
103 Ga0400487_55626 3300039110 Bacteria 5445
104 Ga0400487_61068 3300039110 Bacteria 4124
105 Ga0436361_0419044 3300039447 Bacteria 5982
106 Ga0436363_0730861 3300039450 Bacteria 2901
107 Ga0450920_008622 3300042122 Bacteria 1867
108 Ga0450908_004340 3300042184 Bacteria 2734
109 Ga0451576_0435527 3300045051 Bacteria 1376
110 Ga0495585_0003496 3300046492 Bacteria 10596
111 Ga0495607_0000177 3300046501 Bacteria 67452
112 Ga0495610_0000820 3300046512 Bacteria 29146
113 Ga0495681_0049205 3300047470 Bacteria 1993
114 Ga0501040_0000178 3300049576 Bacteria 36163
115 Ga0501042_0002439 3300049578 Bacteria 11408
116 Ga0501042_0019176 3300049578 Bacteria 4746
117 Ga0501068_0174742 3300049584 Bacteria 1357
118 Ga0501071_0125389 3300049587 Bacteria 1905
119 Ga0501072_0176756 3300049588 Bacteria 1703
120 Ga0501045_0228741 3300049824 Bacteria 1384
121 Ga0501045_0285380 3300049824 Bacteria 1229
122 nmdc:mga05p37_558672_c1 3300050507 Bacteria 1301
123 nmdc:mga0n895_678694_c1 3300050512 Bacteria 1027
124 nmdc:mga0n895_83837_c1 3300050512 Bacteria 3180
125 nmdc:mga0rr50_45420_c1 3300050513 Bacteria 3228
126 nmdc:mga0rr50_479156_c1 3300050513 Bacteria 1057
127 nmdc:mga08x19_3089_c1 3300050514 Bacteria 10004
128 nmdc:mga08x19_53488_c1 3300050514 Bacteria 2598
129 nmdc:mga08x19_7360_c1 3300050514 Bacteria 6539
130 nmdc:mga0a205_230693_c1 3300050515 Bacteria 1734
131 nmdc:mga0a205_25005_c1 3300050515 Bacteria 5685
132 2812367556 2811994881 Bacteria 6298475
133 2857581010 2857576091 Bacteria 5465855
134 2923521606 2923519811 Bacteria 6298479
135 8056183585 8056177738 Bacteria 6748268
136 Ga0400487_45297
137 Ga0070690_100023320
138 Ga0068869_100036663
139 Ga0070680_100024456
140 Ga0070692_10005500
141 Ga0070668_100035360
142 Ga0070669_100001351
143 Ga0070674_100025851
144 Ga0070673_100140898
145 Ga0070705_100232480
146 Ga0070700_100000224
147 Ga0070681_10002103
148 Ga0068867_100000270
149 Ga0070679_100071159
150 Ga0070697_100001628
151 Ga0070695_100008017
152 Ga0070696_100020012
153 Ga0070696_100040164
154 Ga0070704_100013063
155 Ga0070704_100028108
156 Ga0068861_100000220
157 Ga0068863_100161515
158 Ga0068862_100000812
159 Ga0081539_10000468
160 Ga0070712_100041458
161 Ga0075433_10354386
162 Ga0075434_100211697
163 Ga0075434_100300571
164 Ga0068865_100016091
165 Ga0075436_100010042
166 Ga0075435_100146754
167 Ga0111539_10205451
168 Ga0111539_10299765
169 Ga0114129_10512936
170 Ga0105243_10022757
171 Ga0105243_10105594
172 Ga0157380_10002104
173 Ga0209026_1002549
174 Ga0207655_1000094
175 Ga0207713_1004826
176 Ga0207645_10148930
177 Ga0207707_10003773
178 Ga0207693_10026655
179 Ga0207681_10000804
180 Ga0207664_10091024
181 Ga0207709_10072067
182 Ga0207704_10084843
183 Ga0207712_10003033
184 Ga0207668_10014627
185 Ga0207708_10000876
186 Ga0207648_10000639
187 Ga0207675_100004706
188 Ga0207675_100136163
189 Ga0207428_10015093
190 Ga0268265_10001259
191 Ga0307513_10027523
192 Ga0316579_10023078
193 Ga0316576_10135186
194 Ga0307411_10086241
195 Ga0316583_10007558
196 Ga0316585_10003100
197 Ga0373960_0037708
198 Ga0373961_0024537
199 Ga0373931_0010346
200 Ga0316582_0044639
201 Ga0316582_0063313
202 Ga0395900_0001505
203 Ga0400484_15405
204 Ga0400484_16593
205 Ga0400484_24354
206 Ga0400484_28997
207 Ga0400484_41882
208 Ga0400490_01327
209 Ga0400490_03820
210 Ga0400490_13045
211 Ga0400490_17222
212 Ga0400491_21195
213 Ga0400491_28156
214 Ga0400485_07875
215 Ga0400488_19440
216 Ga0400488_25340
217 Ga0400488_37581
218 Ga0400488_50743
219 Ga0400486_10928
220 Ga0400483_014581
221 Ga0400483_031120
222 Ga0400483_032133
223 Ga0400483_082458
224 Ga0400483_105581
225 Ga0400483_188387
226 Ga0400483_190338
227 Ga0400483_211744
228 Ga0400483_255057
229 Ga0400483_283814
230 Ga0400489_71891
231 Ga0400487_02166
232 Ga0400487_16818
233 Ga0400487_27800
234 Ga0400487_42501
235 Ga0400487_44314
236 Ga0400487_54544
237 Ga0400487_55369
238 Ga0400487_55626
239 Ga0400487_61068
240 Ga0436361_0419044
241 Ga0436363_0730861
242 Ga0450920_008622
243 Ga0450908_004340
244 Ga0451576_0435527
245 Ga0495585_0003496
246 Ga0495607_0000177
247 Ga0495610_0000820
248 Ga0495681_0049205
249 Ga0501040_0000178
250 Ga0501042_0002439
251 Ga0501042_0019176
252 Ga0501068_0174742
253 Ga0501071_0125389
254 Ga0501072_0176756
255 Ga0501045_0228741
256 Ga0501045_0285380
257 nmdc:mga05p37_558672_c1
258 nmdc:mga0n895_678694_c1
259 nmdc:mga0n895_83837_c1
260 nmdc:mga0rr50_45420_c1
261 nmdc:mga0rr50_479156_c1
262 nmdc:mga08x19_3089_c1
263 nmdc:mga08x19_53488_c1
264 nmdc:mga08x19_7360_c1
265 nmdc:mga0a205_230693_c1
266 nmdc:mga0a205_25005_c1
267 2812367556
268 2857581010
269 2923521606
270 8056183585

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01207

Dus

Dihydrouridine synthase (Dus)

59

374

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3b0u-assembly2.cif.gz_Y trna-dihydrouridine synthase from thermus thermophilus in complex with trna fragment 0.9443 1 296
3b0p-assembly1.cif.gz_A trna-dihydrouridine synthase from thermus thermophilus 0.9187 1 296
3b0u-assembly2.cif.gz_Y trna-dihydrouridine synthase from thermus thermophilus in complex with trna fragment 0.8939 1 296
3b0p-assembly1.cif.gz_A trna-dihydrouridine synthase from thermus thermophilus 0.8748 1 296
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.7559 1 296
ID Description Score Start End Superfamily
3b0uX01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9846 1 226 3.20.20.70
af_A0A1D6EEF2_139_379_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9732 1 226 3.20.20.70
af_Q8I2W5_196_470_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9533 1 226 3.20.20.70
3b0uX01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9123 1 226 3.20.20.70
af_A0A1D6EEF2_139_379_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9098 1 226 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A4Q3J1G1-F1-model_v4 deleted 0.9936 1 214
AF-A0A7S3I1J8-F1-model_v4 DUS-like FMN-binding domain-containing protein 0.9928 63 180 GO:0000049
GO:0017150
GO:0050660
AF-A2WAH2-F1-model_v4 deleted 0.9923 1 226
AF-E5ARV9-F1-model_v4 NIFR3-like protein 0.9916 1 202 GO:0000049
GO:0017150
GO:0050660
AF-W9T5G9-F1-model_v4 tRNA-dihydrouridine synthase A 0.9914 1 227 GO:0000049
GO:0017150
GO:0050660

Map