F163197
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 135 | 105 | 270 | 403 |
Family's Representative Sequence
| Representative Sequence | 3300010375|Ga0105239_10006045|Ga0105239_100060455 |
| Length | 458 |
| Sequence | MERVTLFSELGLSPELLRAIGEANYVAPTPIQEAAIPAILRSRDLRACAQTGSGKTAAFALPMLQLERDRNAVEEIPRSANGATWGNGRNPEKRQGRDVGEVIGLVLVPTRELAAQVGESFRIFGRYLPRPIKILTVFGGVSINPQMMALRGGADIVVATPGRLLDLVHHNALRLSAVRTLVLDEADRLLDDDFADELARVLALLPDYRQNLLFSATFPPAVQSLAERLLREPVRIDVAGTAETTPDIQQRSIAVDPERRTHLLRHLIQTHAWERTLVFVATKYATEHIALKLQRLGIAAGALHGELSQGARTQALADLKAGRLQVLIATDVAARGIDISELHAVVNFDLPRSTRDYVHRAATEAHFRLIENRNHFRLARERLPGFEPTVTTPGVKGKRKSKKDNRRAAEGIPRSANGATWDKLREAAARGAHAEPAGPASAAKSVWPGRPPGRRRDD |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 2 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 4 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 5 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 6 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 7 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 8 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 9 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 11 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 12 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 13 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 14 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 15 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 16 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 17 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 18 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 19 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 23 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 24 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 25 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 26 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 27 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 28 | 3300029957 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG | Metagenome | Rhizosphere |
| 29 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 30 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 31 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 32 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 33 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 34 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 35 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 36 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 37 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 38 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 39 | 3300041501 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG | Metagenome | Unclassified |
| 40 | 3300042004 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 | Metagenome | Rhizosphere |
| 41 | 3300042007 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 | Metagenome | Rhizosphere |
| 42 | 3300042115 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 | Metagenome | Rhizosphere |
| 43 | 3300042156 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 | Metagenome | Rhizosphere |
| 44 | 3300042436 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 | Metagenome | Rhizosphere |
| 45 | 3300042439 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 | Metagenome | Rhizosphere |
| 46 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 47 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 48 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 49 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 50 | 3300046452 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere | Metagenome | Rhizosphere |
| 51 | 3300046457 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere | Metagenome | Rhizosphere |
| 52 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 53 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 54 | 3300046491 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere | Metagenome | Rhizosphere |
| 55 | 3300046492 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere | Metagenome | Rhizosphere |
| 56 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 57 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 58 | 3300046513 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere | Metagenome | Rhizosphere |
| 59 | 3300046523 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere | Metagenome | Rhizosphere |
| 60 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 61 | 3300046528 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300046530 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere | Metagenome | Rhizosphere |
| 63 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 64 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 65 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 66 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 67 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 68 | 3300046664 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300046810 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300047323 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300047447 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300047469 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 80 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 81 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 82 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 83 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 84 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 85 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 86 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 87 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 88 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300049460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300053092 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere | Metagenome | Endosphere |
| 91 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 92 | 2547132103 | Chromobacterium sp. C-61 | Isolate | Rhizosphere |
| 93 | 2643221645 | Massilia sp. Root351 | Isolate | Unclassified |
| 94 | 2643221664 | Massilia sp. Root418 | Isolate | Unclassified |
| 95 | 2738541280 | Massilia sp. GV090 | Isolate | Unclassified |
| 96 | 2738541300 | Massilia sp. GV016 | Isolate | Unclassified |
| 97 | 2738543018 | Massilia sp. GV045 | Isolate | Unclassified |
| 98 | 2738543030 | Massilia sp. GV097 | Isolate | Unclassified |
| 99 | 2831864461 | Roseateles noduli HZ7 | Isolate | Nodule |
| 100 | 2843690924 | Chromobacterium rhizoryzae JP2-74 | Isolate | Rhizosphere |
| 101 | 2846033681 | Chromobacterium sinusclupearum MWU13-2610 | Isolate | Rhizosphere |
| 102 | 2846037992 | Chromobacterium alticapitis MWU14-2602 | Isolate | Rhizosphere |
| 103 | 2894023352 | Diaphorobacter ruginosibacter DSM 27467 | Isolate | Nodule |
| 104 | 2932422444 | Comamonas sp. 4034 | Isolate | Rhizosphere |
| 105 | 2987605356 | Stenotrophomonas sp. ATCM1_4 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.63 |
| Metatranscriptomes | 0 |
| Isolates | 10.37 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 4.44 |
| Nodule | 1.48 |
| Rhizoplane | 1.48 |
| Rhizosphere | 71.85 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0105239_10006045 | 3300010375 | Bacteria | 14092 |
| 2 | Ga0070665_100040267 | 3300005548 | Bacteria | 4697 |
| 3 | Ga0070665_100215461 | 3300005548 | Bacteria | 1921 |
| 4 | Ga0068855_100000016 | 3300005563 | Bacteria | 222591 |
| 5 | Ga0068857_100364938 | 3300005577 | Bacteria | 1339 |
| 6 | Ga0068861_100004211 | 3300005719 | Bacteria | 9652 |
| 7 | Ga0068863_100000545 | 3300005841 | Bacteria | 38315 |
| 8 | Ga0068860_100000296 | 3300005843 | Bacteria | 69084 |
| 9 | Ga0068862_100095233 | 3300005844 | Bacteria | 2597 |
| 10 | Ga0070717_10010266 | 3300006028 | Bacteria | 7057 |
| 11 | Ga0105240_10049387 | 3300009093 | Bacteria | 5310 |
| 12 | Ga0105247_10010523 | 3300009101 | Bacteria | 5590 |
| 13 | Ga0157380_10001594 | 3300014326 | Bacteria | 14967 |
| 14 | Ga0157380_10066059 | 3300014326 | Bacteria | 2909 |
| 15 | Ga0182006_1006847 | 3300015261 | Bacteria | 5260 |
| 16 | Ga0213872_10005604 | 3300021361 | Bacteria | 6413 |
| 17 | Ga0209673_1011955 | 3300025273 | Bacteria | 3536 |
| 18 | Ga0209564_1000021 | 3300025295 | Bacteria | 571316 |
| 19 | Ga0207680_10069717 | 3300025903 | Bacteria | 2173 |
| 20 | Ga0207695_10155361 | 3300025913 | Bacteria | 2223 |
| 21 | Ga0207671_10033504 | 3300025914 | Bacteria | 3820 |
| 22 | Ga0207700_10175277 | 3300025928 | Bacteria | 1792 |
| 23 | Ga0207661_10114462 | 3300025944 | Bacteria | 2287 |
| 24 | Ga0207667_10000206 | 3300025949 | Bacteria | 83657 |
| 25 | Ga0207667_10183617 | 3300025949 | Bacteria | 2147 |
| 26 | Ga0207703_10000415 | 3300026035 | Bacteria | 45514 |
| 27 | Ga0207675_100008504 | 3300026118 | Bacteria | 9658 |
| 28 | Ga0268266_10032513 | 3300028379 | Bacteria | 4432 |
| 29 | Ga0268266_10209627 | 3300028379 | Bacteria | 1786 |
| 30 | Ga0307515_10021059 | 3300028794 | Bacteria | 11583 |
| 31 | Ga0265338_10019653 | 3300028800 | Bacteria | 7150 |
| 32 | Ga0265324_10000087 | 3300029957 | Bacteria | 71707 |
| 33 | Ga0307511_10000959 | 3300030521 | Bacteria | 30573 |
| 34 | Ga0265339_10000159 | 3300031249 | Bacteria | 56148 |
| 35 | Ga0265316_10126211 | 3300031344 | Bacteria | 1929 |
| 36 | Ga0307513_10031540 | 3300031456 | Bacteria | 5999 |
| 37 | Ga0307509_10000087 | 3300031507 | Bacteria | 126631 |
| 38 | Ga0307509_10000142 | 3300031507 | Bacteria | 108077 |
| 39 | Ga0265313_10040428 | 3300031595 | Bacteria | 2305 |
| 40 | Ga0265342_10008503 | 3300031712 | Bacteria | 7351 |
| 41 | Ga0307510_10028701 | 3300033180 | Bacteria | 6350 |
| 42 | Ga0395905_0000086 | 3300037471 | Bacteria | 153641 |
| 43 | Ga0395905_0190329 | 3300037471 | Bacteria | 1925 |
| 44 | Ga0436361_0242086 | 3300039447 | Bacteria | 11150 |
| 45 | Ga0436361_0771622 | 3300039447 | Bacteria | 11611 |
| 46 | Ga0451845_0575652 | 3300041501 | Bacteria | 2742 |
| 47 | Ga0439445_0001658 | 3300042004 | Bacteria | 4866 |
| 48 | Ga0439449_0003729 | 3300042007 | Bacteria | 5905 |
| 49 | Ga0450911_000116 | 3300042115 | Bacteria | 31956 |
| 50 | Ga0439446_0032682 | 3300042156 | Bacteria | 1510 |
| 51 | Ga0439435_0022040 | 3300042436 | Bacteria | 1660 |
| 52 | Ga0439464_0004227 | 3300042439 | Bacteria | 3662 |
| 53 | Ga0451577_0012964 | 3300042876 | Bacteria | 7820 |
| 54 | Ga0453683_0001302 | 3300044673 | Bacteria | 22014 |
| 55 | Ga0453684_0073185 | 3300044712 | Bacteria | 4322 |
| 56 | Ga0451576_0007943 | 3300045051 | Bacteria | 12552 |
| 57 | Ga0451576_0028764 | 3300045051 | Bacteria | 5952 |
| 58 | Ga0495617_004097 | 3300046452 | Bacteria | 5351 |
| 59 | Ga0495590_0002821 | 3300046457 | Bacteria | 7168 |
| 60 | Ga0495638_0005256 | 3300046460 | Bacteria | 9669 |
| 61 | Ga0495638_0108135 | 3300046460 | Bacteria | 1654 |
| 62 | Ga0495638_0187327 | 3300046460 | Bacteria | 1176 |
| 63 | Ga0495605_0001097 | 3300046474 | Bacteria | 18046 |
| 64 | Ga0495584_0001533 | 3300046491 | Bacteria | 13745 |
| 65 | Ga0495585_0031231 | 3300046492 | Bacteria | 3024 |
| 66 | Ga0495585_0096748 | 3300046492 | Bacteria | 1584 |
| 67 | Ga0495607_0053528 | 3300046501 | Bacteria | 2331 |
| 68 | Ga0495583_0000035 | 3300046506 | Bacteria | 246849 |
| 69 | Ga0495616_0003698 | 3300046513 | Bacteria | 9768 |
| 70 | Ga0495644_0020458 | 3300046523 | Bacteria | 2525 |
| 71 | Ga0495648_0001030 | 3300046524 | Bacteria | 28338 |
| 72 | Ga0495642_0012360 | 3300046528 | Bacteria | 3291 |
| 73 | Ga0495654_0022902 | 3300046530 | Bacteria | 3239 |
| 74 | Ga0495597_0035210 | 3300046542 | Bacteria | 2259 |
| 75 | Ga0495633_0002148 | 3300046558 | Bacteria | 14135 |
| 76 | Ga0495633_0006045 | 3300046558 | Bacteria | 7260 |
| 77 | Ga0495611_0025204 | 3300046648 | Bacteria | 2590 |
| 78 | Ga0495611_0034441 | 3300046648 | Bacteria | 2238 |
| 79 | Ga0495625_0045424 | 3300046660 | Bacteria | 3175 |
| 80 | Ga0495625_0052572 | 3300046660 | Bacteria | 2916 |
| 81 | Ga0495635_0069168 | 3300046663 | Bacteria | 2421 |
| 82 | Ga0495659_0000065 | 3300046664 | Bacteria | 47327 |
| 83 | Ga0495659_0000715 | 3300046664 | Bacteria | 11939 |
| 84 | Ga0495670_0002139 | 3300046691 | Bacteria | 9769 |
| 85 | Ga0495671_0000463 | 3300046692 | Bacteria | 31813 |
| 86 | Ga0495671_0051276 | 3300046692 | Bacteria | 2052 |
| 87 | Ga0495660_0000706 | 3300046810 | Bacteria | 25627 |
| 88 | Ga0495660_0007454 | 3300046810 | Bacteria | 6423 |
| 89 | Ga0495636_0001002 | 3300047318 | Bacteria | 10572 |
| 90 | Ga0495672_0002895 | 3300047320 | Bacteria | 15184 |
| 91 | Ga0495672_0014582 | 3300047320 | Bacteria | 5375 |
| 92 | Ga0495672_0022687 | 3300047320 | Bacteria | 4075 |
| 93 | Ga0495672_0049536 | 3300047320 | Bacteria | 2486 |
| 94 | Ga0495683_0005863 | 3300047323 | Bacteria | 6752 |
| 95 | Ga0495687_000148 | 3300047443 | Bacteria | 106947 |
| 96 | Ga0495685_000018 | 3300047447 | Bacteria | 74016 |
| 97 | Ga0495673_0050620 | 3300047469 | Bacteria | 1822 |
| 98 | Ga0495686_0043954 | 3300047472 | Bacteria | 2829 |
| 99 | Ga0496108_0096044 | 3300048911 | Bacteria | 2524 |
| 100 | Ga0496110_0029268 | 3300048913 | Bacteria | 4739 |
| 101 | Ga0496117_0102334 | 3300048920 | Bacteria | 1808 |
| 102 | Ga0496118_0120840 | 3300048921 | Bacteria | 1708 |
| 103 | Ga0496120_0000098 | 3300048923 | Bacteria | 145165 |
| 104 | Ga0496122_0000416 | 3300048925 | Bacteria | 90497 |
| 105 | Ga0496122_0143924 | 3300048925 | Bacteria | 1485 |
| 106 | Ga0496123_0000104 | 3300048926 | Bacteria | 168230 |
| 107 | Ga0496125_0000416 | 3300048928 | Bacteria | 79287 |
| 108 | Ga0496125_0002719 | 3300048928 | Bacteria | 22469 |
| 109 | Ga0496125_0004561 | 3300048928 | Bacteria | 15887 |
| 110 | Ga0496125_0060756 | 3300048928 | Bacteria | 3035 |
| 111 | Ga0496125_0075238 | 3300048928 | Bacteria | 2614 |
| 112 | Ga0496125_0148372 | 3300048928 | Bacteria | 1616 |
| 113 | Ga0496126_0060197 | 3300048929 | Bacteria | 3417 |
| 114 | Ga0496126_0183362 | 3300048929 | Bacteria | 1777 |
| 115 | Ga0495678_003290 | 3300049459 | Bacteria | 10095 |
| 116 | Ga0495682_0000703 | 3300049460 | Bacteria | 21915 |
| 117 | Ga0495682_0000890 | 3300049460 | Bacteria | 18519 |
| 118 | Ga0500583_0009586 | 3300053092 | Bacteria | 3549 |
| 119 | Ga0500583_0016340 | 3300053092 | Bacteria | 2961 |
| 120 | Ga0500622_0006416 | 3300053156 | Bacteria | 6821 |
| 121 | Ga0500622_0008997 | 3300053156 | Bacteria | 5548 |
| 122 | 2547371916 | 2547132103 | Bacteria | 5115736 |
| 123 | 2644254334 | 2643221645 | Bacteria | 7207331 |
| 124 | 2644357998 | 2643221664 | Bacteria | 7272945 |
| 125 | 2738741152 | 2738541280 | Bacteria | 6630198 |
| 126 | 2738845618 | 2738541300 | Bacteria | 6675882 |
| 127 | 2739276675 | 2738543018 | Bacteria | 6718814 |
| 128 | 2739345719 | 2738543030 | Bacteria | 6719714 |
| 129 | 2831867779 | 2831864461 | Bacteria | 6502356 |
| 130 | 2843693829 | 2843690924 | Bacteria | 5169057 |
| 131 | 2846036518 | 2846033681 | Bacteria | 4377894 |
| 132 | 2846039779 | 2846037992 | Bacteria | 4526407 |
| 133 | 2894025215 | 2894023352 | Bacteria | 5167372 |
| 134 | 2932423969 | 2932422444 | Bacteria | 4678430 |
| 135 | 2987608729 | 2987605356 | Bacteria | 4187822 |
| 136 | Ga0105239_10006045 | |||
| 137 | Ga0070665_100040267 | |||
| 138 | Ga0070665_100215461 | |||
| 139 | Ga0068855_100000016 | |||
| 140 | Ga0068857_100364938 | |||
| 141 | Ga0068861_100004211 | |||
| 142 | Ga0068863_100000545 | |||
| 143 | Ga0068860_100000296 | |||
| 144 | Ga0068862_100095233 | |||
| 145 | Ga0070717_10010266 | |||
| 146 | Ga0105240_10049387 | |||
| 147 | Ga0105247_10010523 | |||
| 148 | Ga0157380_10001594 | |||
| 149 | Ga0157380_10066059 | |||
| 150 | Ga0182006_1006847 | |||
| 151 | Ga0213872_10005604 | |||
| 152 | Ga0209673_1011955 | |||
| 153 | Ga0209564_1000021 | |||
| 154 | Ga0207680_10069717 | |||
| 155 | Ga0207695_10155361 | |||
| 156 | Ga0207671_10033504 | |||
| 157 | Ga0207700_10175277 | |||
| 158 | Ga0207661_10114462 | |||
| 159 | Ga0207667_10000206 | |||
| 160 | Ga0207667_10183617 | |||
| 161 | Ga0207703_10000415 | |||
| 162 | Ga0207675_100008504 | |||
| 163 | Ga0268266_10032513 | |||
| 164 | Ga0268266_10209627 | |||
| 165 | Ga0307515_10021059 | |||
| 166 | Ga0265338_10019653 | |||
| 167 | Ga0265324_10000087 | |||
| 168 | Ga0307511_10000959 | |||
| 169 | Ga0265339_10000159 | |||
| 170 | Ga0265316_10126211 | |||
| 171 | Ga0307513_10031540 | |||
| 172 | Ga0307509_10000087 | |||
| 173 | Ga0307509_10000142 | |||
| 174 | Ga0265313_10040428 | |||
| 175 | Ga0265342_10008503 | |||
| 176 | Ga0307510_10028701 | |||
| 177 | Ga0395905_0000086 | |||
| 178 | Ga0395905_0190329 | |||
| 179 | Ga0436361_0242086 | |||
| 180 | Ga0436361_0771622 | |||
| 181 | Ga0451845_0575652 | |||
| 182 | Ga0439445_0001658 | |||
| 183 | Ga0439449_0003729 | |||
| 184 | Ga0450911_000116 | |||
| 185 | Ga0439446_0032682 | |||
| 186 | Ga0439435_0022040 | |||
| 187 | Ga0439464_0004227 | |||
| 188 | Ga0451577_0012964 | |||
| 189 | Ga0453683_0001302 | |||
| 190 | Ga0453684_0073185 | |||
| 191 | Ga0451576_0007943 | |||
| 192 | Ga0451576_0028764 | |||
| 193 | Ga0495617_004097 | |||
| 194 | Ga0495590_0002821 | |||
| 195 | Ga0495638_0005256 | |||
| 196 | Ga0495638_0108135 | |||
| 197 | Ga0495638_0187327 | |||
| 198 | Ga0495605_0001097 | |||
| 199 | Ga0495584_0001533 | |||
| 200 | Ga0495585_0031231 | |||
| 201 | Ga0495585_0096748 | |||
| 202 | Ga0495607_0053528 | |||
| 203 | Ga0495583_0000035 | |||
| 204 | Ga0495616_0003698 | |||
| 205 | Ga0495644_0020458 | |||
| 206 | Ga0495648_0001030 | |||
| 207 | Ga0495642_0012360 | |||
| 208 | Ga0495654_0022902 | |||
| 209 | Ga0495597_0035210 | |||
| 210 | Ga0495633_0002148 | |||
| 211 | Ga0495633_0006045 | |||
| 212 | Ga0495611_0025204 | |||
| 213 | Ga0495611_0034441 | |||
| 214 | Ga0495625_0045424 | |||
| 215 | Ga0495625_0052572 | |||
| 216 | Ga0495635_0069168 | |||
| 217 | Ga0495659_0000065 | |||
| 218 | Ga0495659_0000715 | |||
| 219 | Ga0495670_0002139 | |||
| 220 | Ga0495671_0000463 | |||
| 221 | Ga0495671_0051276 | |||
| 222 | Ga0495660_0000706 | |||
| 223 | Ga0495660_0007454 | |||
| 224 | Ga0495636_0001002 | |||
| 225 | Ga0495672_0002895 | |||
| 226 | Ga0495672_0014582 | |||
| 227 | Ga0495672_0022687 | |||
| 228 | Ga0495672_0049536 | |||
| 229 | Ga0495683_0005863 | |||
| 230 | Ga0495687_000148 | |||
| 231 | Ga0495685_000018 | |||
| 232 | Ga0495673_0050620 | |||
| 233 | Ga0495686_0043954 | |||
| 234 | Ga0496108_0096044 | |||
| 235 | Ga0496110_0029268 | |||
| 236 | Ga0496117_0102334 | |||
| 237 | Ga0496118_0120840 | |||
| 238 | Ga0496120_0000098 | |||
| 239 | Ga0496122_0000416 | |||
| 240 | Ga0496122_0143924 | |||
| 241 | Ga0496123_0000104 | |||
| 242 | Ga0496125_0000416 | |||
| 243 | Ga0496125_0002719 | |||
| 244 | Ga0496125_0004561 | |||
| 245 | Ga0496125_0060756 | |||
| 246 | Ga0496125_0075238 | |||
| 247 | Ga0496125_0148372 | |||
| 248 | Ga0496126_0060197 | |||
| 249 | Ga0496126_0183362 | |||
| 250 | Ga0495678_003290 | |||
| 251 | Ga0495682_0000703 | |||
| 252 | Ga0495682_0000890 | |||
| 253 | Ga0500583_0009586 | |||
| 254 | Ga0500583_0016340 | |||
| 255 | Ga0500622_0006416 | |||
| 256 | Ga0500622_0008997 | |||
| 257 | 2547371916 | |||
| 258 | 2644254334 | |||
| 259 | 2644357998 | |||
| 260 | 2738741152 | |||
| 261 | 2738845618 | |||
| 262 | 2739276675 | |||
| 263 | 2739345719 | |||
| 264 | 2831867779 | |||
| 265 | 2843693829 | |||
| 266 | 2846036518 | |||
| 267 | 2846039779 | |||
| 268 | 2894025215 | |||
| 269 | 2932423969 | |||
| 270 | 2987608729 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3ber-assembly1.cif.gz_A | human dead-box rna-helicase ddx47, conserved domain i in complex with amp | 0.9666 | 1 | 213 |
| 3fe2-assembly2.cif.gz_B | human dead-box rna helicase ddx5 (p68), conserved domain i in complex with adp | 0.9654 | 2 | 211 |
| 4kbg-assembly1.cif.gz_A | almost closed conformation of the helicase core of the rna helicase hera | 0.9587 | 1 | 213 |
| 4kbg-assembly1.cif.gz_A | almost closed conformation of the helicase core of the rna helicase hera | 0.9542 | 1 | 213 |
| 5gvr-assembly1.cif.gz_A | crystal structure of the ddx41 dead domain in an apo closed form | 0.9514 | 2 | 214 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P25888_1_211_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.98 | 1 | 212 | 3.40.50.300 |
| af_A0A0P0VQJ4_229_320_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.977 | 234 | 303 | 3.40.50.300 |
| af_P25888_1_211_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.9754 | 1 | 212 | 3.40.50.300 |
| af_A0A1D6MHG8_113_357_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.9699 | 9 | 209 | 3.40.50.300 |
| af_Q5ACU6_57_323_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.9699 | 2 | 212 | 3.40.50.300 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A838REB0-F1-model_v4 | DEAD/DEAH box helicase | 0.9753 | 3 | 212 |
GO:0003676
GO:0003724 GO:0005524 GO:0005829 GO:0016787 |
| AF-A0A671FEA3-F1-model_v4 | RNA helicase (EC 3.6.4.13) | 0.9683 | 1 | 199 |
GO:0003676
GO:0003724 GO:0005524 GO:0005634 GO:0005829 GO:0016787 |
| AF-A0A1B6F6P5-F1-model_v4 | RNA helicase (EC 3.6.4.13) | 0.9664 | 2 | 213 |
GO:0003676
GO:0003724 GO:0005524 GO:0010468 GO:0016787 |
| AF-A0A520MS39-F1-model_v4 | DEAD/DEAH box helicase | 0.965 | 1 | 154 |
GO:0003676
GO:0003724 GO:0005524 GO:0005829 GO:0016787 |
| AF-A0A7C8U3V7-F1-model_v4 | RNA helicase (EC 3.6.4.13) | 0.9639 | 2 | 204 |
GO:0003676
GO:0003724 GO:0005524 GO:0005634 GO:0005829 GO:0016787 |