F161525

General Info

Members Datasets Scaffolds Average Seq Length
134 118 118 664

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221585|2643934492
Length 759
Sequence ESLKQQGDVIWNIANLLRGPYRPPQYRRVMIPLTVLRRLDCVLEATKKNVLTYHGQLKASGKHDDETIEKMVNHKFKLSFHNTSAFTFKSLLADADKLNPNLRAYIAGFSANARKILEKFKFEEEIEKLDEANRLFEVVQSVAKVDLHPDRIPNIEMGYLFEDLVRRFNEQANEEAGDHFTPREVIKLMVKLLFTHDDLVYVDGKRITIYDPTCGTGGMLSESDKLIADPETGLNPGANLELFGQEYNPESYAICGSDLMIKDEAVKNIVYGNTLGTGKPKEGFVDGDGHPDERFHYMLANPPFGVEWKPEKDHVTKEHEQFGFKGRFGPGLPRINDGALLFLLHMISKMRPADRKGEGSRIAVVFNGSPLFTGDAGGGESNIRRWIIENDMLEAVIGLPDQLFYNTGISTYIWLVTNRKRPERRGKVQLINAADFARRMKKSLGDKRKRLGDGTNGESDQPDGSPDQIGFITRLYGNFGHEVRMPWADIGNNIDNSDRDADETLCVSKVFRNQDFGYLKITVERPLRLNFTVTNERLRRAQRTGALANLLLSRKRKNKAAAEAEIVAGRQAQASLLKVLRGMRMAFLDGRLVKDRAEFDQMLNQAFKAAGYELEAGLKTALLAPGSLGEKDPKAEVCWNKKGESEPDPDLRDTENVPLPEGIQLPLPLDYEGKKNKGKVSLEPLLELVQQHCEDYLAREVLPYRDDAWIDHSKTKVGYEIPFNRHFYEYKPPRDLTAIEKDIEDLERDIVAMLKEITA

Samples

Sample ID Description Type Environment
1 2517572101 Frankia sp. DC12 Isolate Nodule
2 2643221585 Pelomonas sp. Root662 Isolate Unclassified
3 2643221656 Pelomonas sp. Root405 Isolate Unclassified
4 2869234852 Mesorhizobium sp. M7A.T.Ca.US.000.02.2.1 Isolate Nodule
5 2874109183 Mesorhizobium sp. M7A.T.Ca.TU.009.02.1.1 Isolate Nodule
6 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
7 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
8 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
9 2903513507 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.2 Isolate Nodule
10 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
11 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
12 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
13 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
14 3004232784 Mesorhizobium sp. M7A.T.Ca.US.000.02.1.1 Isolate Nodule
15 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
16 3300002070 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 Metagenome Rhizosphere
17 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
18 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
21 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
22 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
28 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
29 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
30 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
36 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
48 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
67 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
68 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
69 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
70 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
71 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
78 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
79 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
80 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
81 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
82 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
83 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
84 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
85 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
88 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
89 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
90 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
95 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
96 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
97 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
98 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
99 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
100 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
108 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
113 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
116 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
117 8004633249 Mesorhizobium sp. M6A.T.Ce.TU.002.03.1.1 Isolate Nodule
118 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 87.31
Metatranscriptomes 0.75
Isolates 11.94

Biome Distribution

Category Percentage (%)
Aerial Root 0.75
Bulb 0
Endosphere 5.22
Nodule 5.97
Rhizoplane 5.97
Rhizosphere 67.16
Stem 0
Stem Tuber 0
Unclassified 14.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10000617 3300001989 Bacteria 12764
2 JGI24750J21931_1000066 3300002070 Bacteria 15170
3 rootH1_10004567 3300003323 Bacteria 31197
4 Ga0070690_100000016 3300005330 Bacteria 85515
5 Ga0070670_100023805 3300005331 Bacteria 5269
6 Ga0070666_10000011 3300005335 Bacteria 261736
7 Ga0070668_100022063 3300005347 Bacteria 4813
8 Ga0070671_100000343 3300005355 Bacteria 31975
9 Ga0070659_100005836 3300005366 Bacteria 8870
10 Ga0070667_100001464 3300005367 Bacteria 21144
11 Ga0070667_100010295 3300005367 Bacteria 7726
12 Ga0070708_100057481 3300005445 Bacteria 3464
13 Ga0070681_10076268 3300005458 Bacteria 3311
14 Ga0070707_100014526 3300005468 Bacteria 7381
15 Ga0070699_100002859 3300005518 Bacteria 15395
16 Ga0070684_100117567 3300005535 Bacteria 2389
17 Ga0070686_100000001 3300005544 Bacteria 515830
18 Ga0068859_100011608 3300005617 Bacteria 8860
19 Ga0068864_100000827 3300005618 Bacteria 26094
20 Ga0068864_100015269 3300005618 Bacteria 6387
21 Ga0068858_100017808 3300005842 Bacteria 6652
22 Ga0068860_100000030 3300005843 Bacteria 256364
23 Ga0081540_1027920 3300005983 Bacteria 3184
24 Ga0075364_10009234 3300006051 Bacteria 5910
25 Ga0075370_10000013 3300006353 Bacteria 64052
26 Ga0075431_100060499 3300006847 Bacteria 3908
27 Ga0075436_100000144 3300006914 Bacteria 43318
28 Ga0097620_100011608 3300006931 Bacteria 8860
29 Ga0079104_1001979 3300006946 Bacteria 12031
30 Ga0114129_10005799 3300009147 Bacteria 17481
31 Ga0105242_10029196 3300009176 Bacteria 4396
32 Ga0105248_10000468 3300009177 Bacteria 45955
33 Ga0105249_10000016 3300009553 Bacteria 278643
34 Ga0157378_10002852 3300013297 Bacteria 15417
35 Ga0182006_1001100 3300015261 Bacteria 17305
36 Ga0182007_10002716 3300015262 Bacteria 8658
37 Ga0163161_10000044 3300017792 Bacteria 132739
38 Ga0224712_10000884 3300022467 Bacteria 6423
39 Ga0209050_1003846 3300025298 Bacteria 10697
40 Ga0207426_1000899 3300025302 Bacteria 30000
41 Ga0207680_10000008 3300025903 Bacteria 518177
42 Ga0207707_10023511 3300025912 Bacteria 5390
43 Ga0207646_10020563 3300025922 Bacteria 6115
44 Ga0207650_10018165 3300025925 Bacteria 4932
45 Ga0207650_10034417 3300025925 Bacteria 3674
46 Ga0207650_10073300 3300025925 Bacteria 2579
47 Ga0207644_10000262 3300025931 Bacteria 35454
48 Ga0207690_10003835 3300025932 Bacteria 8897
49 Ga0207686_10012422 3300025934 Bacteria 4684
50 Ga0207712_10000009 3300025961 Bacteria 518177
51 Ga0207658_10000305 3300025986 Bacteria 50588
52 Ga0207658_10003598 3300025986 Bacteria 10951
53 Ga0207703_10011517 3300026035 Bacteria 6880
54 Ga0207639_10049861 3300026041 Bacteria 3177
55 Ga0207676_10000265 3300026095 Bacteria 45580
56 Ga0207676_10013490 3300026095 Bacteria 5870
57 Ga0268264_10000003 3300028381 Bacteria 1141976
58 Ga0265323_10000595 3300028653 Bacteria 19886
59 Ga0265327_10001025 3300031251 Bacteria 39409
60 Ga0265316_10000624 3300031344 Bacteria 39417
61 Ga0316576_10020448 3300031727 Bacteria 4557
62 Ga0373932_0001845 3300035112 Bacteria 5674
63 Ga0373931_0000003 3300035691 Bacteria 560286
64 Ga0316584_0056828 3300036712 Bacteria 2929
65 Ga0395900_0000321 3300037418 Bacteria 71088
66 Ga0395905_0027110 3300037471 Bacteria 5403
67 Ga0453683_0000199 3300044673 Bacteria 81569
68 Ga0453684_0002755 3300044712 Bacteria 41616
69 Ga0495650_0001337 3300046471 Bacteria 24602
70 Ga0495650_0002394 3300046471 Bacteria 15319
71 Ga0495596_0035831 3300046500 Bacteria 1966
72 Ga0495606_0001029 3300046507 Bacteria 40481
73 Ga0495632_0000026 3300046519 Bacteria 176367
74 Ga0495648_0007731 3300046524 Bacteria 8562
75 Ga0495668_0014769 3300046616 Bacteria 4572
76 Ga0495661_0005676 3300046665 Bacteria 8836
77 Ga0495671_0000991 3300046692 Bacteria 19796
78 Ga0495589_0027421 3300046794 Bacteria 2880
79 Ga0495660_0000773 3300046810 Bacteria 23995
80 Ga0495660_0004004 3300046810 Bacteria 8991
81 Ga0495672_0025176 3300047320 Bacteria 3816
82 Ga0495687_001893 3300047443 Bacteria 18027
83 Ga0495681_0002374 3300047470 Bacteria 13501
84 Ga0495626_0000054 3300048091 Bacteria 154997
85 Ga0495626_0001010 3300048091 Bacteria 24173
86 Ga0495626_0002108 3300048091 Bacteria 14456
87 Ga0496102_0000355 3300048905 Bacteria 55552
88 Ga0496103_0000600 3300048906 Bacteria 28303
89 Ga0496104_0011386 3300048907 Bacteria 7963
90 Ga0496108_0000061 3300048911 Bacteria 122502
91 Ga0496108_0028521 3300048911 Bacteria 4619
92 Ga0496112_0000552 3300048915 Bacteria 25704
93 Ga0496112_0006967 3300048915 Bacteria 9982
94 Ga0496115_0000220 3300048918 Bacteria 52439
95 Ga0496116_0000590 3300048919 Bacteria 48462
96 Ga0496116_0003279 3300048919 Bacteria 16096
97 Ga0496116_0007728 3300048919 Bacteria 9465
98 Ga0496117_0000715 3300048920 Bacteria 52465
99 Ga0496117_0014158 3300048920 Bacteria 6894
100 Ga0496118_0000130 3300048921 Bacteria 133250
101 Ga0496118_0002555 3300048921 Bacteria 24341
102 Ga0496119_0003508 3300048922 Bacteria 16212
103 Ga0496121_0000375 3300048924 Bacteria 91802
104 Ga0496122_0034725 3300048925 Bacteria 4120
105 Ga0496123_0008477 3300048926 Bacteria 9438
106 Ga0496124_0000163 3300048927 Bacteria 135337
107 Ga0496125_0006383 3300048928 Bacteria 12777
108 Ga0496126_0000361 3300048929 Bacteria 94834
109 Ga0495678_000376 3300049459 Bacteria 45260
110 Ga0501034_0134752 3300049571 Bacteria 2451
111 Ga0501048_0068278 3300049582 Bacteria 2512
112 Ga0501069_0003287 3300049585 Bacteria 8297
113 nmdc:mga00v17_2905_c1 3300050491 Bacteria 8786
114 nmdc:mga07m45_1_c1 3300050496 Bacteria 485809
115 nmdc:mga05p37_131_c1 3300050507 Bacteria 68774
116 nmdc:mga06r32_13239_c1 3300050510 Bacteria 7471
117 nmdc:mga08x19_17_c1 3300050514 Bacteria 313678
118 nmdc:mga0sz30_14343_c2 3300050516 Bacteria 2455

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025925 Ga0207650_10073300 Ga0207650_100733002 478
2 3300005367 Ga0070667_100010295 Ga0070667_1000102955 497
3 3300025986 Ga0207658_10003598 Ga0207658_100035987 497
4 3300005458 Ga0070681_10076268 Ga0070681_100762682 536
5 3300005535 Ga0070684_100117567 Ga0070684_1001175671 536
6 3300025912 Ga0207707_10023511 Ga0207707_100235114 536
7 3300005983 Ga0081540_1027920 Ga0081540_10279203 537
8 3300005518 Ga0070699_100002859 Ga0070699_1000028598 548
9 3300005618 Ga0068864_100015269 Ga0068864_1000152694 548
10 3300006914 Ga0075436_100000144 Ga0075436_10000014414 548
11 3300025925 Ga0207650_10034417 Ga0207650_100344172 548
12 3300026095 Ga0207676_10013490 Ga0207676_100134902 548
13 3300044673 Ga0453683_0000199 Ga0453683_0000199_50616_52694 548
14 3300050514 nmdc:mga08x19_17_c1 nmdc:mga08x19_17_c1_261329_263416 548
15 3300013297 Ga0157378_10002852 Ga0157378_100028522 550
16 3300009147 Ga0114129_10005799 Ga0114129_1000579911 552
17 3300050507 nmdc:mga05p37_131_c1 nmdc:mga05p37_131_c1_57605_59626 552
18 iso_pu_bacteria 2984601300 2984604249 553
19 3300048907 Ga0496104_0011386 Ga0496104_0011386_85_2163 554
20 3300048915 Ga0496112_0000552 Ga0496112_0000552_16921_19002 554
21 3300035112 Ga0373932_0001845 Ga0373932_0001845_2987_4996 557
22 3300035691 Ga0373931_0000003 Ga0373931_0000003_241373_243382 557
23 3300048919 Ga0496116_0000590 Ga0496116_0000590_9794_11725 561
24 3300048920 Ga0496117_0014158 Ga0496117_0014158_4903_6834 561
25 3300048921 Ga0496118_0002555 Ga0496118_0002555_12600_14531 561
26 3300048922 Ga0496119_0003508 Ga0496119_0003508_9835_11766 561
27 3300005445 Ga0070708_100057481 Ga0070708_1000574812 564
28 iso_pu_bacteria 2915358134 2915360957 564
29 3300006847 Ga0075431_100060499 Ga0075431_1000604992 566
30 3300050510 nmdc:mga06r32_13239_c1 nmdc:mga06r32_13239_c1_4505_6640 566
31 3300044712 Ga0453684_0002755 Ga0453684_0002755_28529_30520 567
32 3300005468 Ga0070707_100014526 Ga0070707_1000145262 568
33 3300025922 Ga0207646_10020563 Ga0207646_100205636 568
34 3300046794 Ga0495589_0027421 Ga0495589_0027421_463_2418 568
35 3300028653 Ga0265323_10000595 Ga0265323_100005959 569
36 3300048911 Ga0496108_0000061 Ga0496108_0000061_8800_10995 569
37 3300031251 Ga0265327_10001025 Ga0265327_1000102528 570
38 3300031344 Ga0265316_10000624 Ga0265316_1000062423 570
39 3300049582 Ga0501048_0068278 Ga0501048_0068278_57_2258 571
40 iso_pu_bacteria 2891395885 2891402433 572
41 3300049571 Ga0501034_0134752 Ga0501034_0134752_376_2367 573
42 iso_pu_bacteria 2517572101 2517763412 573
43 iso_pu_bacteria 2891554331 2891560341 573
44 3300046519 Ga0495632_0000026 Ga0495632_0000026_39901_42222 574
45 3300046616 Ga0495668_0014769 Ga0495668_0014769_1352_3673 574
46 3300046810 Ga0495660_0004004 Ga0495660_0004004_5505_7826 574
47 3300049459 Ga0495678_000376 Ga0495678_000376_16692_19013 574
48 iso_pu_bacteria 2946045630 2946047344 577
49 3300025302 Ga0207426_1000899 Ga0207426_100089910 578
50 iso_pu_bacteria 2869234852 2869236070 582
51 iso_pu_bacteria 2874109183 2874112370 582
52 iso_pu_bacteria 2883577096 2883580823 582
53 iso_pu_bacteria 2903513507 2903515303 582
54 iso_pu_bacteria 3004232784 3004238313 582
55 iso_pu_bacteria 8004633249 8004635385 582
56 3300005366 Ga0070659_100005836 Ga0070659_1000058363 583
57 3300009176 Ga0105242_10029196 Ga0105242_100291963 583
58 3300015262 Ga0182007_10002716 Ga0182007_100027164 583
59 3300025932 Ga0207690_10003835 Ga0207690_100038353 583
60 3300025934 Ga0207686_10012422 Ga0207686_100124223 583
61 3300031727 Ga0316576_10020448 Ga0316576_100204484 583
62 3300036712 Ga0316584_0056828 Ga0316584_0056828_438_2615 583
63 3300049585 Ga0501069_0003287 Ga0501069_0003287_4929_7139 583
64 iso_pu_bacteria 8056681323 8056687320 585
65 3300037471 Ga0395905_0027110 Ga0395905_0027110_1395_3581 586
66 3300046471 Ga0495650_0001337 Ga0495650_0001337_6550_8790 586
67 3300047443 Ga0495687_001893 Ga0495687_001893_2561_4753 586
68 3300048905 Ga0496102_0000355 Ga0496102_0000355_35852_38035 586
69 3300048906 Ga0496103_0000600 Ga0496103_0000600_14073_16256 586
70 3300048911 Ga0496108_0028521 Ga0496108_0028521_53_2245 586
71 3300048918 Ga0496115_0000220 Ga0496115_0000220_14528_16711 586
72 3300048919 Ga0496116_0003279 Ga0496116_0003279_7758_9941 586
73 3300048920 Ga0496117_0000715 Ga0496117_0000715_14449_16632 586
74 3300048921 Ga0496118_0000130 Ga0496118_0000130_116561_118744 586
75 3300048924 Ga0496121_0000375 Ga0496121_0000375_4329_6512 586
76 3300048925 Ga0496122_0034725 Ga0496122_0034725_442_2625 586
77 3300048926 Ga0496123_0008477 Ga0496123_0008477_6464_8647 586
78 3300048927 Ga0496124_0000163 Ga0496124_0000163_14342_16525 586
79 3300048928 Ga0496125_0006383 Ga0496125_0006383_4046_6229 586
80 3300048929 Ga0496126_0000361 Ga0496126_0000361_4075_6258 586
81 3300046471 Ga0495650_0002394 Ga0495650_0002394_2813_4648 591
82 3300046524 Ga0495648_0007731 Ga0495648_0007731_5398_7665 591
83 3300047470 Ga0495681_0002374 Ga0495681_0002374_8931_10766 591
84 iso_pu_bacteria 2643221585 2643934492 593
85 iso_pu_bacteria 2643221656 2644315979 593
86 iso_pu_bacteria 2919138771 2919142727 601
87 3300002070 JGI24750J21931_1000066 JGI24750J21931_10000669 605
88 3300005330 Ga0070690_100000016 Ga0070690_10000001657 605
89 3300005331 Ga0070670_100023805 Ga0070670_1000238052 605
90 3300005335 Ga0070666_10000011 Ga0070666_1000001115 605
91 3300005347 Ga0070668_100022063 Ga0070668_1000220632 605
92 3300005355 Ga0070671_100000343 Ga0070671_1000003438 605
93 3300005367 Ga0070667_100001464 Ga0070667_10000146418 605
94 3300005544 Ga0070686_100000001 Ga0070686_100000001504 605
95 3300005617 Ga0068859_100011608 Ga0068859_1000116083 605
96 3300005618 Ga0068864_100000827 Ga0068864_10000082715 605
97 3300005842 Ga0068858_100017808 Ga0068858_1000178083 605
98 3300005843 Ga0068860_100000030 Ga0068860_100000030243 605
99 3300006051 Ga0075364_10009234 Ga0075364_100092343 605
100 3300006353 Ga0075370_10000013 Ga0075370_1000001323 605
101 3300006931 Ga0097620_100011608 Ga0097620_1000116083 605
102 3300009553 Ga0105249_10000016 Ga0105249_10000016244 605
103 3300017792 Ga0163161_10000044 Ga0163161_1000004492 605
104 3300025903 Ga0207680_10000008 Ga0207680_10000008496 605
105 3300025925 Ga0207650_10018165 Ga0207650_100181652 605
106 3300025931 Ga0207644_10000262 Ga0207644_1000026235 605
107 3300025961 Ga0207712_10000009 Ga0207712_10000009496 605
108 3300025986 Ga0207658_10000305 Ga0207658_1000030526 605
109 3300026035 Ga0207703_10011517 Ga0207703_100115172 605
110 3300026095 Ga0207676_10000265 Ga0207676_100002656 605
111 3300028381 Ga0268264_10000003 Ga0268264_100000031118 605
112 3300046500 Ga0495596_0035831 Ga0495596_0035831_71_1891 605
113 3300050491 nmdc:mga00v17_2905_c1 nmdc:mga00v17_2905_c1_5366_7216 605
114 3300050496 nmdc:mga07m45_1_c1 nmdc:mga07m45_1_c1_95450_97270 605
115 3300050516 nmdc:mga0sz30_14343_c2 nmdc:mga0sz30_14343_c2_240_2090 605
116 3300015261 Ga0182006_1001100 Ga0182006_10011009 610
117 3300047320 Ga0495672_0025176 Ga0495672_0025176_1900_3735 610
118 3300001989 JGI24739J22299_10000617 JGI24739J22299_100006174 612
119 3300003323 rootH1_10004567 rootH1_100045673 612
120 3300006946 Ga0079104_1001979 Ga0079104_10019793 612
121 3300009177 Ga0105248_10000468 Ga0105248_1000046824 612
122 3300022467 Ga0224712_10000884 Ga0224712_100008843 612
123 3300025298 Ga0209050_1003846 Ga0209050_10038466 612
124 3300026041 Ga0207639_10049861 Ga0207639_100498612 612
125 3300037418 Ga0395900_0000321 Ga0395900_0000321_38461_40308 612
126 3300046507 Ga0495606_0001029 Ga0495606_0001029_5909_7759 612
127 3300046665 Ga0495661_0005676 Ga0495661_0005676_6713_8563 612
128 3300046692 Ga0495671_0000991 Ga0495671_0000991_10211_12061 612
129 3300046810 Ga0495660_0000773 Ga0495660_0000773_10536_12374 612
130 3300048091 Ga0495626_0000054 Ga0495626_0000054_7459_9309 612
131 3300048091 Ga0495626_0001010 Ga0495626_0001010_17473_19323 612
132 3300048091 Ga0495626_0002108 Ga0495626_0002108_7403_9253 612
133 3300048915 Ga0496112_0006967 Ga0496112_0006967_6721_8559 612
134 3300048919 Ga0496116_0007728 Ga0496116_0007728_1005_2843 612

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12161

HsdM_N

HsdM N-terminal domain

7

142

0.87

PF02384

N6_Mtase

N-6 DNA Methylase

154

454

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7vru-assembly1.cif.gz_B crystal structure of pacii_m1m2s-dna-sah complex 0.8376 3 445
7vs4-assembly1.cif.gz_B crystal structure of pacii_m1m2s-dna(m6a)-sah complex 0.8317 3 445
1aqi-assembly2.cif.gz_B structure of adenine-n6-dna-methyltransferase taqi 0.8245 176 423
2adm-assembly2.cif.gz_B adenine-n6-dna-methyltransferase taqi 0.7998 177 423
7vru-assembly1.cif.gz_A crystal structure of pacii_m1m2s-dna-sah complex 0.7843 1 445
ID Description Score Start End Superfamily
af_Q2G0X6_171_446_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8939 173 448 3.40.50.150
af_Q60297_203_504_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.863 153 447 3.40.50.150
af_Q2FXL4_73_312_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.804 174 414 3.40.50.150
2admB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7998 177 423 3.40.50.150
af_Q2G0X6_171_446_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7953 173 448 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A3C0AMP6-F1-model_v4 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) 0.9931 310 448 GO:0003677
GO:0004519
GO:0008170
GO:0009307
GO:0032259
AF-A0A5C6BAI6-F1-model_v4 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) 0.9915 282 446 GO:0003677
GO:0008170
GO:0009007
GO:0009307
GO:0032259
AF-A0A4V3KWN4-F1-model_v4 SAM-dependent DNA methyltransferase 0.9771 43 132 GO:0008168
GO:0032259
AF-A0A6B3CRB1-F1-model_v4 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) 0.9721 371 448 GO:0003677
GO:0008170
GO:0009307
GO:0032259
AF-A0A3D1U1E5-F1-model_v4 site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72) 0.9679 188 373 GO:0003677
GO:0004519
GO:0008170
GO:0009007
GO:0009307
GO:0032259

Feature Viewer

pLDDT pTM Quality
89.39 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map