F160003

General Info

Members Datasets Scaffolds Average Seq Length
134 111 264 367

Family's Representative Sequence

Representative Sequence 3300025913|Ga0207695_10126903|Ga0207695_101269032
Length 393
Sequence MGPSCGGVGRGSETGGVQTRSTWFQRIILPGFAFKAVVIGGGYATGRELATYFLPSGPWGGLLAMVLSMAIWSVVCTATFLFALQTGSTDYKAFFRHLLGPFWPAFEVAYFCALIVILAVFAAAAGAIGQSLLGWPLIVGSLILMSGIILVATWGNEAVERLFKYVTIFLYGTYAVFVLLSVTHLGDRMLAAFSQHPPMTGWAVGGLTYAGYNIIGAVAVLPVTRHMIGRRDAIAAGLLAGPLAMIPAILFFLCMVAYFPEIAGQTLPSDFLLQKLDIPAFRIVFQLMIFAALLESGTGSVHAINERIAHAYQARRDRQFSKPARLAVTIAMVTGSVVVAARFGLVDLIASGYTWLSYAVLAIFVLPLMTLGVLRLVRQRREPITPDPAAEAA

Samples

Sample ID Description Type Environment
1 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
23 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
28 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
29 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
30 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
31 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
32 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
42 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
43 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
46 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
47 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
48 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
49 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
50 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
51 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
52 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
53 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
54 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
55 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
56 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
57 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
58 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
59 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
60 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
61 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
62 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
63 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
64 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
65 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
66 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
67 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
68 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
80 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
81 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
82 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
83 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
84 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
85 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
86 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
87 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
88 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
89 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
90 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
94 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
95 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
96 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
97 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
98 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
99 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
100 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
101 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
102 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
105 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
106 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
107 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
108 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
109 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
110 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
111 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.78
Metatranscriptomes 0
Isolates 5.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.43
Nodule 0
Rhizoplane 1.49
Rhizosphere 73.13
Stem 0
Stem Tuber 0
Unclassified 2.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207695_10126903 3300025913 Bacteria 2512
2 JGI25406J46586_10003744 3300003203 Bacteria 7115
3 JGI25165J46597_1000010 3300003214 Bacteria 442113
4 rootH1_10169044 3300003323 Unclassified 1689
5 Ga0070680_100007460 3300005336 Bacteria 8348
6 Ga0068868_100200582 3300005338 Bacteria 1663
7 Ga0070669_100040705 3300005353 Bacteria 3378
8 Ga0070713_100020911 3300005436 Bacteria 5024
9 Ga0070681_10019718 3300005458 Bacteria 6754
10 Ga0068853_100346287 3300005539 Bacteria 1381
11 Ga0070672_100196416 3300005543 Bacteria 1686
12 Ga0070665_100003206 3300005548 Bacteria 17594
13 Ga0068855_100171990 3300005563 Bacteria 2453
14 Ga0068856_100228761 3300005614 Bacteria 1875
15 Ga0068861_100170098 3300005719 Bacteria 1805
16 Ga0081539_10000004 3300005985 Bacteria 555600
17 Ga0075434_100269876 3300006871 Bacteria 1721
18 Ga0105240_10017522 3300009093 Bacteria 9650
19 Ga0105240_10158258 3300009093 Bacteria 2692
20 Ga0111539_10193930 3300009094 Bacteria 2370
21 Ga0105245_10345652 3300009098 Bacteria 1472
22 Ga0105248_10368725 3300009177 Bacteria 1617
23 Ga0105237_10005186 3300009545 Bacteria 14738
24 Ga0105249_10014255 3300009553 Bacteria 7028
25 Ga0105249_10152883 3300009553 Unclassified 2223
26 Ga0105239_10012942 3300010375 Bacteria 9282
27 Ga0105246_10303077 3300011119 Bacteria 1291
28 Ga0157370_10001217 3300013104 Bacteria 32246
29 Ga0157372_10103778 3300013307 Bacteria 3249
30 Ga0157380_10001331 3300014326 Bacteria 16060
31 Ga0207425_1002200 3300025245 Bacteria 7095
32 Ga0209233_1000044 3300025261 Bacteria 489783
33 Ga0209025_1000036 3300025294 Bacteria 404113
34 Ga0207695_10039411 3300025913 Bacteria 5079
35 Ga0207660_10002108 3300025917 Bacteria 13196
36 Ga0207681_10172925 3300025923 Bacteria 1639
37 Ga0207694_10115916 3300025924 Bacteria 2135
38 Ga0207691_10211196 3300025940 Bacteria 1686
39 Ga0207667_10054664 3300025949 Bacteria 4199
40 Ga0207667_10135756 3300025949 Bacteria 2533
41 Ga0207712_10105449 3300025961 Bacteria 2103
42 Ga0207712_10152559 3300025961 Unclassified 1786
43 Ga0207639_10321395 3300026041 Bacteria 1374
44 Ga0207675_100217565 3300026118 Bacteria 1840
45 Ga0268266_10019803 3300028379 Bacteria 5734
46 Ga0307513_10088908 3300031456 Bacteria 3156
47 Ga0307509_10000021 3300031507 Bacteria 250589
48 Ga0307509_10000036 3300031507 Bacteria 190164
49 Ga0307405_10091595 3300031731 Bacteria 2015
50 Ga0307416_100290769 3300032002 Bacteria 1617
51 Ga0307411_10311483 3300032005 Bacteria 1267
52 Ga0373937_0052848 3300036401 Bacteria 3726
53 Ga0237819_00337 3300038705 Bacteria 17132
54 Ga0436360_1161362 3300039438 Bacteria 1581
55 Ga0436360_1217292 3300039438 Bacteria 5647
56 Ga0436361_0551351 3300039447 Bacteria 4676
57 Ga0436361_0873561 3300039447 Bacteria 15199
58 Ga0451576_0661683 3300045051 Bacteria 1097
59 Ga0495583_0000027 3300046506 Bacteria 256299
60 Ga0495663_0007778 3300046525 Bacteria 2966
61 Ga0495587_0006445 3300046536 Bacteria 7652
62 Ga0495621_0008031 3300046539 Bacteria 3146
63 Ga0495633_0054545 3300046558 Bacteria 1880
64 Ga0495625_0016608 3300046660 Bacteria 5785
65 Ga0495659_0010734 3300046664 Bacteria 2946
66 Ga0495670_0041040 3300046691 Bacteria 2308
67 Ga0495673_0016017 3300047469 Bacteria 3845
68 Ga0495686_0000057 3300047472 Bacteria 250088
69 Ga0495602_0043773 3300048088 Bacteria 4066
70 Ga0496114_0000777 3300048917 Bacteria 23832
71 Ga0496115_0000127 3300048918 Bacteria 68926
72 Ga0496117_0086618 3300048920 Bacteria 2034
73 Ga0496118_0023606 3300048921 Bacteria 5337
74 Ga0496124_0192429 3300048927 Bacteria 1559
75 Ga0496126_0002682 3300048929 Bacteria 23515
76 Ga0496126_0006616 3300048929 Bacteria 12900
77 Ga0501031_0114854 3300049568 Bacteria 1759
78 Ga0501034_0269803 3300049571 Bacteria 1643
79 Ga0501036_0047385 3300049572 Bacteria 3640
80 Ga0501038_0001343 3300049574 Bacteria 22394
81 Ga0501039_0335279 3300049575 Bacteria 1188
82 Ga0501040_0000503 3300049576 Bacteria 23331
83 Ga0501041_0004198 3300049577 Bacteria 8335
84 Ga0501042_0244323 3300049578 Bacteria 1295
85 Ga0501043_0205479 3300049579 Bacteria 1527
86 Ga0501046_0002320 3300049580 Bacteria 17933
87 Ga0501046_0020255 3300049580 Bacteria 5504
88 Ga0501048_0011375 3300049582 Bacteria 6637
89 Ga0501068_0070919 3300049584 Bacteria 2126
90 Ga0501071_0000219 3300049587 Bacteria 26277
91 Ga0501071_0013694 3300049587 Bacteria 5532
92 Ga0501072_0034409 3300049588 Bacteria 3971
93 Ga0501074_0018687 3300049590 Bacteria 5037
94 Ga0501075_0126802 3300049591 Bacteria 1943
95 Ga0501076_0000202 3300049592 Bacteria 35812
96 Ga0501077_0004491 3300049593 Bacteria 8472
97 Ga0501077_0009515 3300049593 Bacteria 6042
98 Ga0501079_0003735 3300049741 Bacteria 11231
99 Ga0501080_0001355 3300049742 Bacteria 20471
100 Ga0501081_0170856 3300049743 Bacteria 1569
101 Ga0501083_0027994 3300049744 Bacteria 3886
102 Ga0501045_0000097 3300049824 Bacteria 42924
103 Ga0501045_0088754 3300049824 Bacteria 2284
104 Ga0501045_0161652 3300049824 Bacteria 1667
105 nmdc:mga08y16_265159_c1 3300050511 Bacteria 1773
106 nmdc:mga0n895_72277_c1 3300050512 Bacteria 3421
107 nmdc:mga0rr50_88360_c1 3300050513 Bacteria 2407
108 Ga0500643_043982 3300053087 Bacteria 1300
109 Ga0500555_000034 3300053103 Bacteria 82796
110 Ga0500562_019353 3300053108 Bacteria 1761
111 Ga0500608_000170 3300053122 Bacteria 26811
112 Ga0500568_0024180 3300053139 Bacteria 2575
113 Ga0500568_0041629 3300053139 Bacteria 1845
114 Ga0500568_0114776 3300053139 Bacteria 1005
115 Ga0500616_0000053 3300053153 Bacteria 291841
116 Ga0500622_0001457 3300053156 Bacteria 18912
117 Ga0500622_0025727 3300053156 Bacteria 3109
118 Ga0500596_000060 3300053735 Bacteria 15216
119 Ga0500596_002537 3300053735 Bacteria 3594
120 Ga0501084_0000802 3300054114 Bacteria 24061
121 Ga0501084_0011391 3300054114 Bacteria 7365
122 Ga0501082_0010452 3300060353 Bacteria 7986
123 Ga0501082_0030761 3300060353 Bacteria 4627
124 Ga0501082_0218336 3300060353 Bacteria 1659
125 Ga0530510_0001801 3300061734 Bacteria 14613
126 2643728806 2643221541 Bacteria 5498788
127 2643913851 2643221581 Bacteria 3893603
128 2644038723 2643221605 Bacteria 4772303
129 2644044821 2643221606 Bacteria 5588032
130 2644390994 2643221671 Bacteria 5496681
131 2995952640 2995948881 Bacteria 6358104
132 8057104899 8057101203 Bacteria 5034064
133 Ga0207695_10126903
134 JGI25406J46586_10003744
135 JGI25165J46597_1000010
136 rootH1_10169044
137 Ga0070680_100007460
138 Ga0068868_100200582
139 Ga0070669_100040705
140 Ga0070713_100020911
141 Ga0070681_10019718
142 Ga0068853_100346287
143 Ga0070672_100196416
144 Ga0070665_100003206
145 Ga0068855_100171990
146 Ga0068856_100228761
147 Ga0068861_100170098
148 Ga0081539_10000004
149 Ga0075434_100269876
150 Ga0105240_10017522
151 Ga0105240_10158258
152 Ga0111539_10193930
153 Ga0105245_10345652
154 Ga0105248_10368725
155 Ga0105237_10005186
156 Ga0105249_10014255
157 Ga0105249_10152883
158 Ga0105239_10012942
159 Ga0105246_10303077
160 Ga0157370_10001217
161 Ga0157372_10103778
162 Ga0157380_10001331
163 Ga0207425_1002200
164 Ga0209233_1000044
165 Ga0209025_1000036
166 Ga0207695_10039411
167 Ga0207660_10002108
168 Ga0207681_10172925
169 Ga0207694_10115916
170 Ga0207691_10211196
171 Ga0207667_10054664
172 Ga0207667_10135756
173 Ga0207712_10105449
174 Ga0207712_10152559
175 Ga0207639_10321395
176 Ga0207675_100217565
177 Ga0268266_10019803
178 Ga0307513_10088908
179 Ga0307509_10000021
180 Ga0307509_10000036
181 Ga0307405_10091595
182 Ga0307416_100290769
183 Ga0307411_10311483
184 Ga0373937_0052848
185 Ga0237819_00337
186 Ga0436360_1161362
187 Ga0436360_1217292
188 Ga0436361_0551351
189 Ga0436361_0873561
190 Ga0451576_0661683
191 Ga0495583_0000027
192 Ga0495663_0007778
193 Ga0495587_0006445
194 Ga0495621_0008031
195 Ga0495633_0054545
196 Ga0495625_0016608
197 Ga0495659_0010734
198 Ga0495670_0041040
199 Ga0495673_0016017
200 Ga0495686_0000057
201 Ga0495602_0043773
202 Ga0496114_0000777
203 Ga0496115_0000127
204 Ga0496117_0086618
205 Ga0496118_0023606
206 Ga0496124_0192429
207 Ga0496126_0002682
208 Ga0496126_0006616
209 Ga0501031_0114854
210 Ga0501034_0269803
211 Ga0501036_0047385
212 Ga0501038_0001343
213 Ga0501039_0335279
214 Ga0501040_0000503
215 Ga0501041_0004198
216 Ga0501042_0244323
217 Ga0501043_0205479
218 Ga0501046_0002320
219 Ga0501046_0020255
220 Ga0501048_0011375
221 Ga0501068_0070919
222 Ga0501071_0000219
223 Ga0501071_0013694
224 Ga0501072_0034409
225 Ga0501074_0018687
226 Ga0501075_0126802
227 Ga0501076_0000202
228 Ga0501077_0004491
229 Ga0501077_0009515
230 Ga0501079_0003735
231 Ga0501080_0001355
232 Ga0501081_0170856
233 Ga0501083_0027994
234 Ga0501045_0000097
235 Ga0501045_0088754
236 Ga0501045_0161652
237 nmdc:mga08y16_265159_c1
238 nmdc:mga0n895_72277_c1
239 nmdc:mga0rr50_88360_c1
240 Ga0500643_043982
241 Ga0500555_000034
242 Ga0500562_019353
243 Ga0500608_000170
244 Ga0500568_0024180
245 Ga0500568_0041629
246 Ga0500568_0114776
247 Ga0500616_0000053
248 Ga0500622_0001457
249 Ga0500622_0025727
250 Ga0500596_000060
251 Ga0500596_002537
252 Ga0501084_0000802
253 Ga0501084_0011391
254 Ga0501082_0010452
255 Ga0501082_0030761
256 Ga0501082_0218336
257 Ga0530510_0001801
258 2643728806
259 2643913851
260 2644038723
261 2644044821
262 2644390994
263 2995952640
264 8057104899

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.7916 12 339
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.7489 12 353
7nf6-assembly1.cif.gz_B ovine b0,+at-rbat heterodimer 0.7423 12 333
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.7307 12 339
6jmq-assembly1.cif.gz_A lat1-cd98hc complex bound to mem-108 fab 0.7267 9 335
ID Description Score Start End Superfamily
af_Q2G0E6_5_354_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8301 11 339 1.20.1740.10
af_Q2FVI1_4_463_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8117 11 351 1.20.1740.10
af_Q2FVB0_2_275_1.20.1730.10 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.7893 63 326 1.20.1730.10
af_Q2G0E6_5_354_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.782 11 339 1.20.1740.10
af_Q5PP33_104_499_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7793 11 333 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A2G2J536-F1-model_v4 Xaa-Pro dipeptidyl-peptidase C-terminal domain-containing protein 0.9788 1 348 GO:0008239
GO:0016020
AF-A0A136WFM4-F1-model_v4 Spore germination protein 0.9715 4 346 GO:0016020
AF-A0A849H2Z9-F1-model_v4 GerAB/ArcD/ProY family transporter 0.9649 5 351 GO:0016020
AF-A0A2A8HZB8-F1-model_v4 Membrane protein YkvI 0.9607 5 349 GO:0016020
AF-A0A3D5DG97-F1-model_v4 Membrane protein YkvI 0.9577 5 348 GO:0016020

Map