F158009

General Info

Members Datasets Scaffolds Average Seq Length
133 105 130 388

Family's Representative Sequence

Representative Sequence 3300053103|Ga0500555_007284|Ga0500555_007284_275_1504
Length 409
Sequence MSAPPASNRPLTVMLVAAEASGDERGAGLARALKRRLGEGVRFVGVGGDRMAAEGVKSPFDITQLSILGLLEGLLAYPRVVRLADETAALAAREEPDVAVLIDSWGFTLRVAQRLRRADPRLPLIKYVGPQVWASRPGRAKTLARAVDHLLAIHAFDAPYFEAEGLPVTFVGNSALSLDFSGADPDRLRALIGAQAGEPILLVLPGSRPSEIARVLPAFEDAVARLKAARLRAGRPQLHVVIPAAPTVAEMVKARVAGWADRAHVVEGEAAKLDAMKAATVALACSGTVTTQLALAGTPMVVAYRIGVVTYALLKPLIRAPYATLFNIAAGEAVAPELIQDDCNGPALAAEVAKRLDDETLRQAQVRAQFAALDKMGRGGPDPDDAAAEAVLKLLAQDAPPLGELRRRR

Samples

Sample ID Description Type Environment
1 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
2 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
3 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
34 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
35 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
37 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
59 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
60 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
63 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
71 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
72 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
73 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
74 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
75 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
76 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
77 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
80 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
81 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
82 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
91 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
92 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
93 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
94 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
95 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
96 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
97 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
98 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
99 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
100 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
101 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
102 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
103 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
104 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
105 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.74
Metatranscriptomes 0
Isolates 2.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.06
Nodule 0
Rhizoplane 3.76
Rhizosphere 63.16
Stem 0
Stem Tuber 0
Unclassified 9.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10000685 3300003791 Bacteria 28722
2 Ga0055531_10001281 3300003794 Bacteria 18942
3 Ga0055531_10002834 3300003794 Bacteria 11348
4 Ga0065165_1000552 3300005262 Bacteria 56291
5 Ga0065165_1031531 3300005262 Bacteria 1674
6 Ga0070658_10223638 3300005327 Bacteria 1593
7 Ga0070680_100028229 3300005336 Bacteria 4499
8 Ga0070671_100005159 3300005355 Bacteria 10397
9 Ga0070659_100001077 3300005366 Bacteria 19933
10 Ga0070659_100035777 3300005366 Bacteria 3868
11 Ga0070681_10014098 3300005458 Bacteria 7955
12 Ga0070665_100000116 3300005548 Bacteria 150141
13 Ga0068855_100044782 3300005563 Bacteria 5236
14 Ga0068855_100238719 3300005563 Bacteria 2032
15 Ga0070664_100106483 3300005564 Bacteria 2443
16 Ga0068856_100168364 3300005614 Bacteria 2202
17 Ga0068864_100005899 3300005618 Bacteria 10040
18 Ga0068863_100072072 3300005841 Bacteria 3269
19 Ga0070717_10239677 3300006028 Bacteria 1599
20 Ga0075368_10002787 3300006042 Bacteria 5768
21 Ga0075363_100125445 3300006048 Bacteria 1437
22 Ga0075362_10045700 3300006177 Bacteria 1945
23 Ga0075367_10000827 3300006178 Bacteria 12261
24 Ga0075370_10048048 3300006353 Bacteria 2417
25 Ga0068871_100241908 3300006358 Bacteria 1569
26 Ga0105240_10013651 3300009093 Bacteria 11140
27 Ga0105240_10018864 3300009093 Bacteria 9236
28 Ga0105240_10201337 3300009093 Bacteria 2333
29 Ga0105240_10238376 3300009093 Bacteria 2110
30 Ga0105242_10073199 3300009176 Bacteria 2848
31 Ga0105238_10049737 3300009551 Bacteria 4221
32 Ga0105238_10054654 3300009551 Bacteria 4009
33 Ga0105238_10349121 3300009551 Bacteria 1468
34 Ga0157370_10336448 3300013104 Bacteria 1392
35 Ga0157374_10213783 3300013296 Bacteria 1891
36 Ga0163162_10072887 3300013306 Bacteria 3489
37 Ga0157375_10057082 3300013308 Bacteria 3858
38 Ga0163163_10128828 3300014325 Bacteria 2570
39 Ga0213876_10186083 3300021384 Bacteria 1104
40 Ga0209026_1000864 3300025250 Bacteria 15837
41 Ga0209148_1003911 3300025254 Bacteria 3857
42 Ga0209758_1001665 3300025297 Bacteria 25124
43 Ga0209050_1000101 3300025298 Bacteria 230076
44 Ga0209257_1000221 3300025304 Bacteria 134870
45 Ga0207705_10001576 3300025909 Bacteria 18123
46 Ga0207707_10018184 3300025912 Bacteria 6126
47 Ga0207707_10084873 3300025912 Bacteria 2766
48 Ga0207695_10001229 3300025913 Bacteria 43850
49 Ga0207695_10007605 3300025913 Bacteria 13731
50 Ga0207660_10003244 3300025917 Bacteria 10652
51 Ga0207657_10006923 3300025919 Bacteria 11688
52 Ga0207652_10007375 3300025921 Bacteria 8865
53 Ga0207650_10058619 3300025925 Bacteria 2867
54 Ga0207644_10002801 3300025931 Bacteria 11240
55 Ga0207690_10000129 3300025932 Bacteria 62350
56 Ga0207690_10067430 3300025932 Bacteria 2454
57 Ga0207704_10006201 3300025938 Bacteria 5557
58 Ga0207679_10030208 3300025945 Bacteria 3782
59 Ga0207667_10189895 3300025949 Bacteria 2108
60 Ga0207677_10066212 3300026023 Bacteria 2525
61 Ga0207702_10109188 3300026078 Bacteria 2456
62 Ga0207641_10074943 3300026088 Bacteria 2921
63 Ga0207641_10096910 3300026088 Bacteria 2591
64 Ga0207648_10160663 3300026089 Bacteria 1984
65 Ga0207676_10002829 3300026095 Bacteria 12349
66 Ga0207674_10169970 3300026116 Bacteria 2134
67 Ga0268266_10000064 3300028379 Bacteria 249533
68 Ga0268266_10018138 3300028379 Bacteria 6000
69 Ga0307517_10000497 3300028786 Bacteria 67390
70 Ga0307511_10033310 3300030521 Bacteria 4552
71 Ga0265327_10000682 3300031251 Bacteria 54560
72 Ga0265327_10001180 3300031251 Bacteria 35383
73 Ga0307513_10000448 3300031456 Bacteria 59427
74 Ga0307513_10002007 3300031456 Bacteria 28699
75 Ga0307513_10004437 3300031456 Bacteria 18736
76 Ga0373927_0001895 3300035695 Bacteria 15450
77 Ga0373925_0000061 3300037068 Bacteria 117783
78 Ga0395899_0000167 3300037312 Bacteria 100973
79 Ga0395899_0031671 3300037312 Bacteria 3974
80 Ga0395900_0000009 3300037418 Bacteria 476249
81 Ga0395898_0083203 3300037466 Bacteria 3084
82 Ga0395905_0002729 3300037471 Bacteria 19333
83 Ga0395905_0074046 3300037471 Bacteria 3191
84 Ga0395905_0181633 3300037471 Bacteria 1975
85 Ga0395901_0000014 3300038443 Bacteria 375100
86 Ga0395901_0009838 3300038443 Bacteria 9696
87 Ga0395901_0180960 3300038443 Bacteria 2211
88 Ga0436365_0894748 3300039437 Bacteria 3812
89 Ga0495583_0024897 3300046506 Bacteria 2999
90 Ga0495583_0059598 3300046506 Bacteria 1710
91 Ga0495643_0063239 3300046522 Bacteria 1958
92 Ga0495642_0001981 3300046528 Bacteria 8590
93 Ga0495609_0016395 3300046538 Bacteria 3452
94 Ga0495597_0001428 3300046542 Bacteria 17175
95 Ga0495611_0012894 3300046648 Bacteria 3553
96 Ga0495625_0004098 3300046660 Bacteria 13905
97 Ga0495625_0086903 3300046660 Bacteria 2168
98 Ga0495669_0010381 3300046684 Bacteria 3934
99 Ga0495613_0007417 3300046689 Bacteria 8174
100 Ga0495581_0016072 3300047315 Bacteria 4351
101 Ga0495677_0014800 3300047445 Bacteria 2838
102 Ga0496102_0145259 3300048905 Bacteria 2226
103 Ga0496107_0014019 3300048910 Bacteria 5611
104 Ga0496108_0063807 3300048911 Bacteria 3102
105 Ga0496109_0002851 3300048912 Bacteria 14465
106 Ga0496115_0007602 3300048918 Bacteria 7983
107 Ga0496125_0088525 3300048928 Bacteria 2333
108 Ga0501033_0187021 3300049570 Bacteria 1483
109 Ga0501037_0085419 3300049573 Bacteria 2285
110 Ga0501047_0020196 3300049581 Bacteria 6396
111 Ga0501047_0275457 3300049581 Bacteria 1528
112 Ga0501044_0020636 3300049823 Bacteria 7035
113 nmdc:mga03683_32984_c1 3300050489 Bacteria 2086
114 nmdc:mga03n38_55254_c1 3300050490 Bacteria 1788
115 nmdc:mga00v17_6751_c1 3300050491 Bacteria 6097
116 nmdc:mga06z11_12781_c1 3300050494 Bacteria 3663
117 nmdc:mga07m45_14110_c1 3300050496 Bacteria 4251
118 Ga0500635_0000228 3300053080 Bacteria 24908
119 Ga0500566_0033097 3300053094 Bacteria 3013
120 Ga0500555_007284 3300053103 Bacteria 3146
121 Ga0500595_002687 3300053119 Bacteria 8632
122 Ga0500595_009927 3300053119 Bacteria 3810
123 Ga0500595_032515 3300053119 Bacteria 1741
124 Ga0500608_007464 3300053122 Bacteria 4528
125 Ga0500559_0000077 3300053136 Bacteria 76287
126 Ga0500559_0005983 3300053136 Bacteria 5526
127 Ga0500639_040380 3300053163 Bacteria 2456
128 Ga0500636_0017058 3300053177 Bacteria 4283
129 Ga0500625_063057 3300053729 Bacteria 1675
130 Ga0500645_002967 3300053730 Bacteria 7199

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300021384 Ga0213876_10186083 Ga0213876_101860831 322
2 3300025925 Ga0207650_10058619 Ga0207650_100586193 342
3 3300048928 Ga0496125_0088525 Ga0496125_0088525_873_2009 376
4 3300005355 Ga0070671_100005159 Ga0070671_1000051594 379
5 3300005366 Ga0070659_100001077 Ga0070659_1000010777 379
6 3300009093 Ga0105240_10018864 Ga0105240_100188643 379
7 3300013296 Ga0157374_10213783 Ga0157374_102137832 379
8 3300013306 Ga0163162_10072887 Ga0163162_100728873 379
9 3300013308 Ga0157375_10057082 Ga0157375_100570825 379
10 3300014325 Ga0163163_10128828 Ga0163163_101288282 379
11 3300037471 Ga0395905_0074046 Ga0395905_0074046_68_1219 379
12 3300039437 Ga0436365_0894748 Ga0436365_0894748_2458_3609 379
13 3300046506 Ga0495583_0024897 Ga0495583_0024897_804_1946 379
14 3300046528 Ga0495642_0001981 Ga0495642_0001981_3935_5095 379
15 3300046660 Ga0495625_0086903 Ga0495625_0086903_365_1507 379
16 3300047445 Ga0495677_0014800 Ga0495677_0014800_1226_2437 379
17 3300048905 Ga0496102_0145259 Ga0496102_0145259_923_2074 379
18 3300048910 Ga0496107_0014019 Ga0496107_0014019_2569_3720 379
19 3300048911 Ga0496108_0063807 Ga0496108_0063807_1037_2188 379
20 3300048912 Ga0496109_0002851 Ga0496109_0002851_5663_6814 379
21 3300049570 Ga0501033_0187021 Ga0501033_0187021_325_1467 379
22 3300049573 Ga0501037_0085419 Ga0501037_0085419_462_1604 379
23 3300049581 Ga0501047_0275457 Ga0501047_0275457_27_1178 379
24 3300049823 Ga0501044_0020636 Ga0501044_0020636_5606_6748 379
25 3300050490 nmdc:mga03n38_55254_c1 nmdc:mga03n38_55254_c1_111_1268 379
26 3300050491 nmdc:mga00v17_6751_c1 nmdc:mga00v17_6751_c1_2061_3218 379
27 3300050494 nmdc:mga06z11_12781_c1 nmdc:mga06z11_12781_c1_2108_3265 379
28 3300050496 nmdc:mga07m45_14110_c1 nmdc:mga07m45_14110_c1_2967_4124 379
29 3300053119 Ga0500595_009927 Ga0500595_009927_153_1301 379
30 3300053136 Ga0500559_0000077 Ga0500559_0000077_54882_56033 379
31 3300053163 Ga0500639_040380 Ga0500639_040380_619_1770 379
32 iso_pu_bacteria 2643221614 2644084986 379
33 iso_pu_bacteria 2643221661 2644342538 379
34 iso_pu_bacteria 2643221666 2644365838 379
35 3300026116 Ga0207674_10169970 Ga0207674_101699701 382
36 3300046648 Ga0495611_0012894 Ga0495611_0012894_309_1469 383
37 3300046506 Ga0495583_0059598 Ga0495583_0059598_296_1459 384
38 3300046522 Ga0495643_0063239 Ga0495643_0063239_149_1312 384
39 3300046538 Ga0495609_0016395 Ga0495609_0016395_2018_3181 384
40 3300046542 Ga0495597_0001428 Ga0495597_0001428_14050_15213 384
41 3300049581 Ga0501047_0020196 Ga0501047_0020196_4320_5474 384
42 3300053080 Ga0500635_0000228 Ga0500635_0000228_6129_7292 384
43 3300053094 Ga0500566_0033097 Ga0500566_0033097_1512_2675 384
44 3300053119 Ga0500595_002687 Ga0500595_002687_2156_3319 384
45 3300053122 Ga0500608_007464 Ga0500608_007464_1062_2225 384
46 3300053136 Ga0500559_0005983 Ga0500559_0005983_3819_4982 384
47 3300053177 Ga0500636_0017058 Ga0500636_0017058_841_2004 384
48 3300053729 Ga0500625_063057 Ga0500625_063057_489_1652 384
49 3300028786 Ga0307517_10000497 Ga0307517_1000049742 385
50 3300031456 Ga0307513_10002007 Ga0307513_1000200722 385
51 3300005336 Ga0070680_100028229 Ga0070680_1000282293 386
52 3300005366 Ga0070659_100035777 Ga0070659_1000357774 386
53 3300005458 Ga0070681_10014098 Ga0070681_100140982 386
54 3300005548 Ga0070665_100000116 Ga0070665_10000011691 386
55 3300005563 Ga0068855_100044782 Ga0068855_1000447822 386
56 3300005563 Ga0068855_100238719 Ga0068855_1002387192 386
57 3300006028 Ga0070717_10239677 Ga0070717_102396772 386
58 3300009093 Ga0105240_10201337 Ga0105240_102013372 386
59 3300009093 Ga0105240_10238376 Ga0105240_102383762 386
60 3300009176 Ga0105242_10073199 Ga0105242_100731992 386
61 3300009551 Ga0105238_10049737 Ga0105238_100497373 386
62 3300009551 Ga0105238_10054654 Ga0105238_100546545 386
63 3300009551 Ga0105238_10349121 Ga0105238_103491212 386
64 3300025254 Ga0209148_1003911 Ga0209148_10039112 386
65 3300025909 Ga0207705_10001576 Ga0207705_100015765 386
66 3300025912 Ga0207707_10018184 Ga0207707_100181845 386
67 3300025912 Ga0207707_10084873 Ga0207707_100848732 386
68 3300025913 Ga0207695_10001229 Ga0207695_1000122925 386
69 3300025917 Ga0207660_10003244 Ga0207660_100032448 386
70 3300025919 Ga0207657_10006923 Ga0207657_100069232 386
71 3300025921 Ga0207652_10007375 Ga0207652_100073752 386
72 3300025932 Ga0207690_10000129 Ga0207690_100001295 386
73 3300025932 Ga0207690_10067430 Ga0207690_100674302 386
74 3300025949 Ga0207667_10189895 Ga0207667_101898951 386
75 3300028379 Ga0268266_10000064 Ga0268266_10000064197 386
76 3300028379 Ga0268266_10018138 Ga0268266_100181382 386
77 3300031251 Ga0265327_10000682 Ga0265327_1000068243 386
78 3300031251 Ga0265327_10001180 Ga0265327_100011809 386
79 3300031456 Ga0307513_10000448 Ga0307513_1000044839 386
80 3300035695 Ga0373927_0001895 Ga0373927_0001895_13156_14328 386
81 3300037068 Ga0373925_0000061 Ga0373925_0000061_25830_27002 386
82 3300037312 Ga0395899_0000167 Ga0395899_0000167_89644_90831 386
83 3300037312 Ga0395899_0031671 Ga0395899_0031671_1954_3126 386
84 3300037418 Ga0395900_0000009 Ga0395900_0000009_315547_316734 386
85 3300037466 Ga0395898_0083203 Ga0395898_0083203_938_2125 386
86 3300037471 Ga0395905_0002729 Ga0395905_0002729_18136_19323 386
87 3300038443 Ga0395901_0000014 Ga0395901_0000014_266752_267939 386
88 3300038443 Ga0395901_0009838 Ga0395901_0009838_6875_8047 386
89 3300048918 Ga0496115_0007602 Ga0496115_0007602_5404_6573 386
90 3300053119 Ga0500595_032515 Ga0500595_032515_502_1665 386
91 3300003791 Ga0055530_10000685 Ga0055530_100006857 387
92 3300003794 Ga0055531_10001281 Ga0055531_1000128114 387
93 3300003794 Ga0055531_10002834 Ga0055531_100028344 387
94 3300005262 Ga0065165_1000552 Ga0065165_100055220 387
95 3300005262 Ga0065165_1031531 Ga0065165_10315312 387
96 3300005327 Ga0070658_10223638 Ga0070658_102236381 387
97 3300005564 Ga0070664_100106483 Ga0070664_1001064832 387
98 3300005614 Ga0068856_100168364 Ga0068856_1001683641 387
99 3300005618 Ga0068864_100005899 Ga0068864_1000058996 387
100 3300005841 Ga0068863_100072072 Ga0068863_1000720723 387
101 3300006042 Ga0075368_10002787 Ga0075368_100027873 387
102 3300006048 Ga0075363_100125445 Ga0075363_1001254451 387
103 3300006177 Ga0075362_10045700 Ga0075362_100457002 387
104 3300006178 Ga0075367_10000827 Ga0075367_100008274 387
105 3300006353 Ga0075370_10048048 Ga0075370_100480482 387
106 3300006358 Ga0068871_100241908 Ga0068871_1002419082 387
107 3300009093 Ga0105240_10013651 Ga0105240_1001365110 387
108 3300013104 Ga0157370_10336448 Ga0157370_103364482 387
109 3300025250 Ga0209026_1000864 Ga0209026_10008643 387
110 3300025297 Ga0209758_1001665 Ga0209758_100166526 387
111 3300025298 Ga0209050_1000101 Ga0209050_1000101201 387
112 3300025304 Ga0209257_1000221 Ga0209257_10002217 387
113 3300025913 Ga0207695_10007605 Ga0207695_1000760510 387
114 3300025931 Ga0207644_10002801 Ga0207644_100028014 387
115 3300025938 Ga0207704_10006201 Ga0207704_100062012 387
116 3300025945 Ga0207679_10030208 Ga0207679_100302084 387
117 3300026023 Ga0207677_10066212 Ga0207677_100662123 387
118 3300026078 Ga0207702_10109188 Ga0207702_101091883 387
119 3300026088 Ga0207641_10074943 Ga0207641_100749432 387
120 3300026088 Ga0207641_10096910 Ga0207641_100969103 387
121 3300026089 Ga0207648_10160663 Ga0207648_101606632 387
122 3300026095 Ga0207676_10002829 Ga0207676_1000282910 387
123 3300030521 Ga0307511_10033310 Ga0307511_100333104 387
124 3300031456 Ga0307513_10004437 Ga0307513_1000443716 387
125 3300037471 Ga0395905_0181633 Ga0395905_0181633_327_1502 387
126 3300038443 Ga0395901_0180960 Ga0395901_0180960_946_2145 387
127 3300046660 Ga0495625_0004098 Ga0495625_0004098_6506_7705 387
128 3300046684 Ga0495669_0010381 Ga0495669_0010381_111_1316 387
129 3300046689 Ga0495613_0007417 Ga0495613_0007417_5194_6390 387
130 3300047315 Ga0495581_0016072 Ga0495581_0016072_614_1819 387
131 3300050489 nmdc:mga03683_32984_c1 nmdc:mga03683_32984_c1_662_1828 387
132 3300053103 Ga0500555_007284 Ga0500555_007284_275_1504 387
133 3300053730 Ga0500645_002967 Ga0500645_002967_1516_2706 387

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02684

LpxB

Lipid-A-disaccharide synthetase

13

389

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
8gym-assembly1.cif.gz_t1 cryo-em structure of tetrahymena thermophila respiratory mega-complex mc iv2+(i+iii2+ii)2 0.7722 3 366
8gym-assembly1.cif.gz_t1 cryo-em structure of tetrahymena thermophila respiratory mega-complex mc iv2+(i+iii2+ii)2 0.7295 3 366
4ueg-assembly1.cif.gz_B-2 crystal structure of human glycogenin-2 catalytic domain 0.7081 192 259
7vz6-assembly1.cif.gz_B the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp-glucose 0.7049 2 383
7vza-assembly1.cif.gz_H-4 the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp 0.6978 5 383
ID Description Score Start End Superfamily
af_P10441_9_377_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8493 8 380 3.40.50.2000
af_F4IF99_42_436_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8485 7 371 3.40.50.2000
af_P10441_9_377_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8431 8 380 3.40.50.2000
af_F4IF99_42_436_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8021 7 371 3.40.50.2000
af_K7KRG7_210_378_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7635 188 362 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A522D0X3-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9672 1 385 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A522D0X3-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9599 1 385 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A2X1AZF4-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9558 1 150 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A328APD2-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9532 4 386 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A7Y7DR98-F1-model_v4 deleted 0.952 7 139

Feature Viewer

pLDDT pTM Quality
89.93 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map