F157826
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 133 | 100 | 266 | 292 |
Family's Representative Sequence
| Representative Sequence | 3300049581|Ga0501047_0047158|Ga0501047_0047158_3001_4011 |
| Length | 336 |
| Sequence | LLFLAGVPILRRLSSSSFFALQAGSDFPEVFLSTQTTSTRPGASAARPDSTADFKIWINGTLYAKQDAKISVYDHGLLYGDGVFEGLRSYGGRVFRLEGHLDRLWDSAKAILLEIPLTRQALTEAIDATLKANGLNDGYIRLVVTRGAGTLGLDPNRTSNPQVIIITDYIAVYPEELYSTGLNIITASSLRNHPGALSPRIKSLNYLNNILAKIEGQQAGCLEALMLNHKGEVAECTADNIFLVRDGVILTPPTDAGILEGITRDAVIELARTAGYEVREVSLTRHDVYIADEVFLTGTAVEVIGVVKVDNRKIGTGAPGPITKELKEKFYKLARS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 2 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 3 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 4 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 5 | 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) | Metagenome | Rhizosphere |
| 6 | 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) | Metagenome | Rhizosphere |
| 7 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 9 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 13 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 14 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 16 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 17 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 18 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 19 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 20 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 27 | 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 33 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 35 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 36 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 37 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 38 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 39 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 40 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 41 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 42 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 43 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 44 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 45 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 46 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 47 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 48 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 49 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 50 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 51 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 52 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 53 | 3300039110 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 | Metagenome | Unclassified |
| 54 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 55 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 56 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 57 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 58 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 59 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 60 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 61 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 63 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 64 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 65 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 66 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 67 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 68 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 69 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 70 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 71 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 72 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 73 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 75 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 76 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 77 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 78 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 79 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 80 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 81 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 82 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 83 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 84 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 85 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 86 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 87 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 88 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 89 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 90 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 91 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 92 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 95 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 96 | 2684623219 | Planctomyces sp. SH-PL14 | Isolate | Unclassified |
| 97 | 2687453257 | Planctomyces sp. SH-PL62 | Isolate | Unclassified |
| 98 | 2687453341 | Pirellula sp. SH-Sr6A | Isolate | Unclassified |
| 99 | 2889415604 | Paludisphaera rhizosphaerae JC665 | Isolate | Rhizosphere |
| 100 | 2920107658 | Aquisphaera insulae JC669 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.24 |
| Metatranscriptomes | 0 |
| Isolates | 3.76 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0 |
| Nodule | 0 |
| Rhizoplane | 3.01 |
| Rhizosphere | 89.47 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 3.76 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0501047_0047158 | 3300049581 | Bacteria | 4163 |
| 2 | rootH2_10276529 | 3300003320 | Bacteria | 1925 |
| 3 | rootH1_10033981 | 3300003323 | Bacteria | 2638 |
| 4 | Ga0065704_10108364 | 3300005289 | Bacteria | 2031 |
| 5 | Ga0065712_10070506 | 3300005290 | Bacteria | 5948 |
| 6 | Ga0065707_10085014 | 3300005295 | Bacteria | 6540 |
| 7 | Ga0070714_100049593 | 3300005435 | Bacteria | 3573 |
| 8 | Ga0070700_100269414 | 3300005441 | Bacteria | 1230 |
| 9 | Ga0070700_100428437 | 3300005441 | Bacteria | 1001 |
| 10 | Ga0070698_100446158 | 3300005471 | Unclassified | 1229 |
| 11 | Ga0070699_100274959 | 3300005518 | Bacteria | 1508 |
| 12 | Ga0070665_100001118 | 3300005548 | Bacteria | 32963 |
| 13 | Ga0068863_100521084 | 3300005841 | Bacteria | 1172 |
| 14 | Ga0081455_10043551 | 3300005937 | Bacteria | 3924 |
| 15 | Ga0070717_10019842 | 3300006028 | Bacteria | 5278 |
| 16 | Ga0075428_100006903 | 3300006844 | Bacteria | 12612 |
| 17 | Ga0075428_100103182 | 3300006844 | Bacteria | 3110 |
| 18 | Ga0075428_100166859 | 3300006844 | Bacteria | 2388 |
| 19 | Ga0075429_100238290 | 3300006880 | Bacteria | 1594 |
| 20 | Ga0111539_10007078 | 3300009094 | Bacteria | 14375 |
| 21 | Ga0105245_10515041 | 3300009098 | Bacteria | 1214 |
| 22 | Ga0105247_10019971 | 3300009101 | Bacteria | 4026 |
| 23 | Ga0114129_10006622 | 3300009147 | Bacteria | 16448 |
| 24 | Ga0105248_10113911 | 3300009177 | Bacteria | 3050 |
| 25 | Ga0105238_10000071 | 3300009551 | Bacteria | 115018 |
| 26 | Ga0105249_10193212 | 3300009553 | Bacteria | 1988 |
| 27 | Ga0157379_10219201 | 3300014968 | Bacteria | 1724 |
| 28 | Ga0157376_10105855 | 3300014969 | Bacteria | 2467 |
| 29 | Ga0213872_10020520 | 3300021361 | Bacteria | 3046 |
| 30 | Ga0207692_10181391 | 3300025898 | Bacteria | 1227 |
| 31 | Ga0207646_10025450 | 3300025922 | Bacteria | 5413 |
| 32 | Ga0207694_10002836 | 3300025924 | Bacteria | 13982 |
| 33 | Ga0207712_10346089 | 3300025961 | Bacteria | 1234 |
| 34 | Ga0207641_10473499 | 3300026088 | Bacteria | 1213 |
| 35 | Ga0207428_10055844 | 3300027907 | Bacteria | 3138 |
| 36 | Ga0268266_10001141 | 3300028379 | Bacteria | 32972 |
| 37 | Ga0265338_10006210 | 3300028800 | Bacteria | 15307 |
| 38 | Ga0265320_10009876 | 3300031240 | Bacteria | 5719 |
| 39 | Ga0265325_10000746 | 3300031241 | Bacteria | 23521 |
| 40 | Ga0265325_10029584 | 3300031241 | Bacteria | 2943 |
| 41 | Ga0265339_10000487 | 3300031249 | Bacteria | 31006 |
| 42 | Ga0265331_10000330 | 3300031250 | Bacteria | 50816 |
| 43 | Ga0265331_10012551 | 3300031250 | Bacteria | 4583 |
| 44 | Ga0265327_10000096 | 3300031251 | Bacteria | 193827 |
| 45 | Ga0265327_10004195 | 3300031251 | Bacteria | 12977 |
| 46 | Ga0265313_10000317 | 3300031595 | Bacteria | 52472 |
| 47 | Ga0307508_10425043 | 3300031616 | Bacteria | 920 |
| 48 | Ga0265314_10001509 | 3300031711 | Bacteria | 25775 |
| 49 | Ga0265314_10146243 | 3300031711 | Bacteria | 1455 |
| 50 | Ga0265342_10005020 | 3300031712 | Bacteria | 10210 |
| 51 | Ga0316576_10062468 | 3300031727 | Bacteria | 2732 |
| 52 | Ga0307405_10050490 | 3300031731 | Bacteria | 2576 |
| 53 | Ga0307410_10009094 | 3300031852 | Bacteria | 5552 |
| 54 | Ga0307409_100000976 | 3300031995 | Bacteria | 13349 |
| 55 | Ga0307415_100067515 | 3300032126 | Bacteria | 2499 |
| 56 | Ga0316574_0201937 | 3300035398 | Bacteria | 1277 |
| 57 | Ga0373935_0001466 | 3300035692 | Bacteria | 13086 |
| 58 | Ga0373925_0024503 | 3300037068 | Bacteria | 4406 |
| 59 | Ga0395898_0201745 | 3300037466 | Bacteria | 1899 |
| 60 | Ga0400487_13587 | 3300039110 | Bacteria | 5951 |
| 61 | Ga0436365_1786014 | 3300039437 | Bacteria | 1521 |
| 62 | Ga0436361_0015134 | 3300039447 | Bacteria | 8256 |
| 63 | Ga0466966_0019230 | 3300044684 | Bacteria | 4495 |
| 64 | Ga0466958_0147400 | 3300045836 | Bacteria | 1484 |
| 65 | Ga0495580_0000402 | 3300046472 | Bacteria | 35488 |
| 66 | Ga0495608_0015052 | 3300046511 | Bacteria | 5366 |
| 67 | Ga0495667_0301310 | 3300046559 | Bacteria | 1015 |
| 68 | Ga0495658_0025682 | 3300046683 | Bacteria | 3151 |
| 69 | Ga0495604_0295445 | 3300047317 | Bacteria | 1090 |
| 70 | Ga0495672_0019234 | 3300047320 | Bacteria | 4510 |
| 71 | Ga0496104_0049479 | 3300048907 | Bacteria | 3964 |
| 72 | Ga0496108_0195718 | 3300048911 | Bacteria | 1753 |
| 73 | Ga0496114_0612527 | 3300048917 | Bacteria | 960 |
| 74 | Ga0496115_0246225 | 3300048918 | Bacteria | 1473 |
| 75 | Ga0496124_0277100 | 3300048927 | Bacteria | 1225 |
| 76 | Ga0496126_0333580 | 3300048929 | Bacteria | 1244 |
| 77 | Ga0501033_0017708 | 3300049570 | Bacteria | 5381 |
| 78 | Ga0501033_0113274 | 3300049570 | Bacteria | 1973 |
| 79 | Ga0501033_0251925 | 3300049570 | Unclassified | 1251 |
| 80 | Ga0501033_0367203 | 3300049570 | Bacteria | 1007 |
| 81 | Ga0501034_0001146 | 3300049571 | Bacteria | 36828 |
| 82 | Ga0501034_0005132 | 3300049571 | Bacteria | 14366 |
| 83 | Ga0501034_0017668 | 3300049571 | Bacteria | 7314 |
| 84 | Ga0501034_0065669 | 3300049571 | Bacteria | 3641 |
| 85 | Ga0501034_0187505 | 3300049571 | Unclassified | 2031 |
| 86 | Ga0501034_0436754 | 3300049571 | Bacteria | 1228 |
| 87 | Ga0501034_0627991 | 3300049571 | Bacteria | 978 |
| 88 | Ga0501036_0359438 | 3300049572 | Bacteria | 1216 |
| 89 | Ga0501038_0325316 | 3300049574 | Bacteria | 1202 |
| 90 | Ga0501042_0382480 | 3300049578 | Bacteria | 1019 |
| 91 | Ga0501046_0002811 | 3300049580 | Bacteria | 16208 |
| 92 | Ga0501046_0032029 | 3300049580 | Bacteria | 4259 |
| 93 | Ga0501047_0078079 | 3300049581 | Bacteria | 3184 |
| 94 | Ga0501067_0004187 | 3300049583 | Bacteria | 7961 |
| 95 | Ga0501067_0015138 | 3300049583 | Unclassified | 4269 |
| 96 | Ga0501068_0001539 | 3300049584 | Bacteria | 12257 |
| 97 | Ga0501068_0003809 | 3300049584 | Bacteria | 8175 |
| 98 | Ga0501069_0000540 | 3300049585 | Bacteria | 17305 |
| 99 | Ga0501069_0000557 | 3300049585 | Bacteria | 17161 |
| 100 | Ga0501070_0000505 | 3300049586 | Bacteria | 35625 |
| 101 | Ga0501070_0002066 | 3300049586 | Bacteria | 17648 |
| 102 | Ga0501070_0003704 | 3300049586 | Bacteria | 13205 |
| 103 | Ga0501070_0011564 | 3300049586 | Bacteria | 7451 |
| 104 | Ga0501070_0339823 | 3300049586 | Bacteria | 1220 |
| 105 | Ga0501071_0001111 | 3300049587 | Bacteria | 14997 |
| 106 | Ga0501071_0006817 | 3300049587 | Bacteria | 7439 |
| 107 | Ga0501071_0313286 | 3300049587 | Bacteria | 1191 |
| 108 | Ga0501072_0003466 | 3300049588 | Bacteria | 11888 |
| 109 | Ga0501073_0001590 | 3300049589 | Bacteria | 16852 |
| 110 | Ga0501074_0006061 | 3300049590 | Bacteria | 8724 |
| 111 | Ga0501074_0006643 | 3300049590 | Bacteria | 8360 |
| 112 | Ga0501076_0054340 | 3300049592 | Unclassified | 3174 |
| 113 | Ga0501079_0040180 | 3300049741 | Bacteria | 3608 |
| 114 | Ga0501080_0017883 | 3300049742 | Bacteria | 6561 |
| 115 | Ga0501080_0058306 | 3300049742 | Bacteria | 3594 |
| 116 | Ga0501083_0000920 | 3300049744 | Bacteria | 19522 |
| 117 | Ga0501083_0001354 | 3300049744 | Bacteria | 16645 |
| 118 | Ga0501035_0058867 | 3300049822 | Bacteria | 3422 |
| 119 | Ga0501044_0443816 | 3300049823 | Bacteria | 1205 |
| 120 | nmdc:mga05p37_11131_c1 | 3300050507 | Bacteria | 10690 |
| 121 | nmdc:mga08y16_8435_c1 | 3300050511 | Bacteria | 10787 |
| 122 | Ga0495601_0089935 | 3300053077 | Bacteria | 1974 |
| 123 | Ga0495619_0048278 | 3300053085 | Bacteria | 2805 |
| 124 | Ga0495619_0124546 | 3300053085 | Bacteria | 1768 |
| 125 | Ga0501084_0001629 | 3300054114 | Bacteria | 17806 |
| 126 | Ga0501084_0002640 | 3300054114 | Bacteria | 14450 |
| 127 | Ga0501082_0004213 | 3300060353 | Bacteria | 12566 |
| 128 | Ga0501082_0004620 | 3300060353 | Bacteria | 12019 |
| 129 | 2687238480 | 2684623219 | Bacteria | 8442773 |
| 130 | 2688069416 | 2687453257 | Bacteria | 6784659 |
| 131 | 2688394737 | 2687453341 | Bacteria | 6534136 |
| 132 | 2889417143 | 2889415604 | Bacteria | 8048700 |
| 133 | 2920108159 | 2920107658 | Bacteria | 10042636 |
| 134 | Ga0501047_0047158 | |||
| 135 | rootH2_10276529 | |||
| 136 | rootH1_10033981 | |||
| 137 | Ga0065704_10108364 | |||
| 138 | Ga0065712_10070506 | |||
| 139 | Ga0065707_10085014 | |||
| 140 | Ga0070714_100049593 | |||
| 141 | Ga0070700_100269414 | |||
| 142 | Ga0070700_100428437 | |||
| 143 | Ga0070698_100446158 | |||
| 144 | Ga0070699_100274959 | |||
| 145 | Ga0070665_100001118 | |||
| 146 | Ga0068863_100521084 | |||
| 147 | Ga0081455_10043551 | |||
| 148 | Ga0070717_10019842 | |||
| 149 | Ga0075428_100006903 | |||
| 150 | Ga0075428_100103182 | |||
| 151 | Ga0075428_100166859 | |||
| 152 | Ga0075429_100238290 | |||
| 153 | Ga0111539_10007078 | |||
| 154 | Ga0105245_10515041 | |||
| 155 | Ga0105247_10019971 | |||
| 156 | Ga0114129_10006622 | |||
| 157 | Ga0105248_10113911 | |||
| 158 | Ga0105238_10000071 | |||
| 159 | Ga0105249_10193212 | |||
| 160 | Ga0157379_10219201 | |||
| 161 | Ga0157376_10105855 | |||
| 162 | Ga0213872_10020520 | |||
| 163 | Ga0207692_10181391 | |||
| 164 | Ga0207646_10025450 | |||
| 165 | Ga0207694_10002836 | |||
| 166 | Ga0207712_10346089 | |||
| 167 | Ga0207641_10473499 | |||
| 168 | Ga0207428_10055844 | |||
| 169 | Ga0268266_10001141 | |||
| 170 | Ga0265338_10006210 | |||
| 171 | Ga0265320_10009876 | |||
| 172 | Ga0265325_10000746 | |||
| 173 | Ga0265325_10029584 | |||
| 174 | Ga0265339_10000487 | |||
| 175 | Ga0265331_10000330 | |||
| 176 | Ga0265331_10012551 | |||
| 177 | Ga0265327_10000096 | |||
| 178 | Ga0265327_10004195 | |||
| 179 | Ga0265313_10000317 | |||
| 180 | Ga0307508_10425043 | |||
| 181 | Ga0265314_10001509 | |||
| 182 | Ga0265314_10146243 | |||
| 183 | Ga0265342_10005020 | |||
| 184 | Ga0316576_10062468 | |||
| 185 | Ga0307405_10050490 | |||
| 186 | Ga0307410_10009094 | |||
| 187 | Ga0307409_100000976 | |||
| 188 | Ga0307415_100067515 | |||
| 189 | Ga0316574_0201937 | |||
| 190 | Ga0373935_0001466 | |||
| 191 | Ga0373925_0024503 | |||
| 192 | Ga0395898_0201745 | |||
| 193 | Ga0400487_13587 | |||
| 194 | Ga0436365_1786014 | |||
| 195 | Ga0436361_0015134 | |||
| 196 | Ga0466966_0019230 | |||
| 197 | Ga0466958_0147400 | |||
| 198 | Ga0495580_0000402 | |||
| 199 | Ga0495608_0015052 | |||
| 200 | Ga0495667_0301310 | |||
| 201 | Ga0495658_0025682 | |||
| 202 | Ga0495604_0295445 | |||
| 203 | Ga0495672_0019234 | |||
| 204 | Ga0496104_0049479 | |||
| 205 | Ga0496108_0195718 | |||
| 206 | Ga0496114_0612527 | |||
| 207 | Ga0496115_0246225 | |||
| 208 | Ga0496124_0277100 | |||
| 209 | Ga0496126_0333580 | |||
| 210 | Ga0501033_0017708 | |||
| 211 | Ga0501033_0113274 | |||
| 212 | Ga0501033_0251925 | |||
| 213 | Ga0501033_0367203 | |||
| 214 | Ga0501034_0001146 | |||
| 215 | Ga0501034_0005132 | |||
| 216 | Ga0501034_0017668 | |||
| 217 | Ga0501034_0065669 | |||
| 218 | Ga0501034_0187505 | |||
| 219 | Ga0501034_0436754 | |||
| 220 | Ga0501034_0627991 | |||
| 221 | Ga0501036_0359438 | |||
| 222 | Ga0501038_0325316 | |||
| 223 | Ga0501042_0382480 | |||
| 224 | Ga0501046_0002811 | |||
| 225 | Ga0501046_0032029 | |||
| 226 | Ga0501047_0078079 | |||
| 227 | Ga0501067_0004187 | |||
| 228 | Ga0501067_0015138 | |||
| 229 | Ga0501068_0001539 | |||
| 230 | Ga0501068_0003809 | |||
| 231 | Ga0501069_0000540 | |||
| 232 | Ga0501069_0000557 | |||
| 233 | Ga0501070_0000505 | |||
| 234 | Ga0501070_0002066 | |||
| 235 | Ga0501070_0003704 | |||
| 236 | Ga0501070_0011564 | |||
| 237 | Ga0501070_0339823 | |||
| 238 | Ga0501071_0001111 | |||
| 239 | Ga0501071_0006817 | |||
| 240 | Ga0501071_0313286 | |||
| 241 | Ga0501072_0003466 | |||
| 242 | Ga0501073_0001590 | |||
| 243 | Ga0501074_0006061 | |||
| 244 | Ga0501074_0006643 | |||
| 245 | Ga0501076_0054340 | |||
| 246 | Ga0501079_0040180 | |||
| 247 | Ga0501080_0017883 | |||
| 248 | Ga0501080_0058306 | |||
| 249 | Ga0501083_0000920 | |||
| 250 | Ga0501083_0001354 | |||
| 251 | Ga0501035_0058867 | |||
| 252 | Ga0501044_0443816 | |||
| 253 | nmdc:mga05p37_11131_c1 | |||
| 254 | nmdc:mga08y16_8435_c1 | |||
| 255 | Ga0495601_0089935 | |||
| 256 | Ga0495619_0048278 | |||
| 257 | Ga0495619_0124546 | |||
| 258 | Ga0501084_0001629 | |||
| 259 | Ga0501084_0002640 | |||
| 260 | Ga0501082_0004213 | |||
| 261 | Ga0501082_0004620 | |||
| 262 | 2687238480 | |||
| 263 | 2688069416 | |||
| 264 | 2688394737 | |||
| 265 | 2889417143 | |||
| 266 | 2920108159 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5cm0-assembly1.cif.gz_C-2 | crystal structure of branched-chain aminotransferase from thermophilic archaea geoglobus acetivorans | 0.9708 | 4 | 283 |
| 5mqz-assembly1.cif.gz_A | archaeal branched-chain amino acid aminotransferase from archaeoglobus fulgidus; holoform | 0.9679 | 4 | 283 |
| 5e25-assembly1.cif.gz_C | crystal structure of branched-chain aminotransferase from thermophilic archaea geoglobus acetivorans complexed with alpha-ketoglutarate | 0.9675 | 4 | 283 |
| 5cm0-assembly1.cif.gz_B-2 | crystal structure of branched-chain aminotransferase from thermophilic archaea geoglobus acetivorans | 0.9654 | 4 | 283 |
| 5mqz-assembly1.cif.gz_B | archaeal branched-chain amino acid aminotransferase from archaeoglobus fulgidus; holoform | 0.9653 | 4 | 283 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_I1JRF2_385_551_3.20.10.10 | Alpha Beta;Alpha-Beta Barrel;D-amino Acid Aminotransferase; Chain A, domain 2;D-amino Acid Aminotransferase, subunit A, domain 2 | 0.9818 | 128 | 283 | 3.20.10.10 |
| 6gkrB02 | Alpha Beta;Alpha-Beta Barrel;D-amino Acid Aminotransferase; Chain A, domain 2;D-amino Acid Aminotransferase, subunit A, domain 2 | 0.9736 | 129 | 284 | 3.20.10.10 |
| 3u0gF02 | Alpha Beta;Alpha-Beta Barrel;D-amino Acid Aminotransferase; Chain A, domain 2;D-amino Acid Aminotransferase, subunit A, domain 2 | 0.9673 | 130 | 284 | 3.20.10.10 |
| 5mr0A02 | Alpha Beta;Alpha-Beta Barrel;D-amino Acid Aminotransferase; Chain A, domain 2;D-amino Acid Aminotransferase, subunit A, domain 2 | 0.9654 | 129 | 286 | 3.20.10.10 |
| af_P0AB80_137_302_3.30.470.10 | Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.9627 | 128 | 286 | 3.30.470.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A2R6AU00-F1-model_v4 | Branched-chain amino acid aminotransferase | 0.9911 | 153 | 262 |
GO:0008483
GO:0008652 GO:0009082 |
| AF-A0A3D1B0G0-F1-model_v4 | Branched chain amino acid aminotransferase | 0.9864 | 170 | 243 |
GO:0008483
GO:0008652 GO:0009082 |
| AF-A0A2E0LFS4-F1-model_v4 | branched-chain-amino-acid transaminase (EC 2.6.1.42) | 0.9862 | 66 | 285 |
GO:0008652
GO:0009082 GO:0052655 GO:0052656 |
| AF-A0A4U9D3I1-F1-model_v4 | branched-chain-amino-acid transaminase (EC 2.6.1.42) | 0.9849 | 134 | 245 |
GO:0005829
GO:0006532 GO:0009098 GO:0009099 GO:0052655 GO:0052656 |
| AF-A0A3D2SHC0-F1-model_v4 | branched-chain-amino-acid transaminase (EC 2.6.1.42) | 0.9848 | 153 | 254 |
GO:0004084
GO:0005829 GO:0006532 GO:0009098 GO:0009099 |