F157521
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 133 | 108 | 266 | 471 |
Family's Representative Sequence
| Representative Sequence | 3300046543|Ga0495645_0057217|Ga0495645_0057217_11_1594 |
| Length | 522 |
| Sequence | MRVPGIICASRSLLPGPGGDRSLEQVVNVATLPGIVEASYAMPDMHGGYGFPIGGVAATDPAHGGVVSPGGVGFDISCGVRLLAADVDRRDLSPVLEQIMNRLAAAIPRGAGRGGIWRLRGAGQLRHVLTGGARYAVGQGHGVERDLLRCEGGGAVADADPAQVSSRAIDRGLQQVGSLGSGNHFLEIQAVDEIYDREAARAFGLRPKQVCVMIHCGSRGLGHQICGDHVRAMEKVMDRYGITVPDRQLACAPVGSPEGQGYLRAMAAAANYGRVNRQVLANTARHVFAETPGGDLNLVYDVSHNLAKIETHVVNGRPTQLCVHRKGATPALPPGHPDLPPDLRKTGQPVLIPGSMGTCSYVLAGVPGGGAFASTCHGAGRLMSRHEALRRVNGSRLQRWLEARGIAVRGLAEEAPDAYKDVTAVVTAAEGADLCRKVARLVPLGVVKGLGPAACGPSHQCAAVGRGRSPAPWQNRQRWSRNRGRPGRSPAGTGACRTRPTCASRRGLRPGKSASLRRSARW |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 2 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 4 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 6 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 7 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 10 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 11 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 14 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 15 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 16 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 17 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 18 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 19 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 23 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 24 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 25 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 26 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 27 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 28 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 29 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 30 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 31 | 3300038726 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 | Metagenome | Unclassified |
| 32 | 3300038727 | Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 | Metagenome | Unclassified |
| 33 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 34 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 35 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 36 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 37 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 38 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 39 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 40 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 41 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 42 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 43 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 44 | 3300046492 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere | Metagenome | Rhizosphere |
| 45 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 46 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 47 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 48 | 3300046690 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere | Metagenome | Rhizosphere |
| 49 | 3300046794 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere | Metagenome | Rhizosphere |
| 50 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 51 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 52 | 3300047322 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere | Metagenome | Rhizosphere |
| 53 | 3300047447 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere | Metagenome | Rhizosphere |
| 54 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 55 | 3300048089 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere | Metagenome | Rhizosphere |
| 56 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 57 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 58 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 59 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 60 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 61 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 62 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 63 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 64 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 65 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 66 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 67 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 68 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 69 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 70 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 71 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 72 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 73 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 75 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 76 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 77 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 78 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 79 | 3300053107 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere | Metagenome | Endosphere |
| 80 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 81 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 82 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 83 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 84 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 85 | 2515154137 | Salinispora arenicola CNX482 | Isolate | Rhizosphere |
| 86 | 2515154155 | Actinopolymorpha alba DSM 45243 | Isolate | Rhizosphere |
| 87 | 2515154203 | Salinispora arenicola CNR921 | Isolate | Rhizosphere |
| 88 | 2554235005 | Streptomyces violaceusniger SPC6 | Isolate | Rhizosphere |
| 89 | 2558860280 | Kutzneria sp. 744 | Isolate | Unclassified |
| 90 | 2582581312 | Streptomyces atratus OK008 | Isolate | Rhizosphere |
| 91 | 2675903060 | Nonomuraea wenchangensis CGMCC 4.5598 | Isolate | Rhizosphere |
| 92 | 2775506925 | Saccharopolyspora phatthalungensis NRRL B-24798 | Isolate | Rhizosphere |
| 93 | 2827628540 | Actinopolymorpha cephalotaxi DSM 45117 | Isolate | Rhizosphere |
| 94 | 2858868258 | Micromonospora sp. MH33 | Isolate | Unclassified |
| 95 | 2863067949 | Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) | Isolate | Rhizosphere |
| 96 | 2867302475 | Micromonospora globbae WPS1-2 | Isolate | Unclassified |
| 97 | 2867312974 | Micromonospora musae NGC1-4 | Isolate | Unclassified |
| 98 | 2867319477 | Micromonospora musae MS1-9 | Isolate | Unclassified |
| 99 | 2867507094 | Micromonospora zingiberis PLAI 1-1 | Isolate | Unclassified |
| 100 | 2891395885 | Microbispora catharanthi CR1-09 | Isolate | Unclassified |
| 101 | 2902582711 | Micromonospora sp. AP08 | Isolate | Unclassified |
| 102 | 2996221748 | Micromonospora veneta CAP181 | Isolate | Unclassified |
| 103 | 2997600082 | Streptomyces coffeae CA1R205 | Isolate | Unclassified |
| 104 | 3006493962 | Streptomyces grisecoloratus TRM S81-3 | Isolate | Rhizosphere |
| 105 | 8054160619 | Streptomyces rhizoryzae RS10V-4 | Isolate | Rhizosphere |
| 106 | 8055412473 | Micromonospora phytophila DSM 105363 | Isolate | Nodule |
| 107 | 8056207758 | Saccharopolyspora indica KCTC 29208 | Isolate | Rhizosphere |
| 108 | 8056829672 | Streptomyces barringtoniae JA03 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 81.2 |
| Metatranscriptomes | 0 |
| Isolates | 18.8 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 2.26 |
| Nodule | 0.75 |
| Rhizoplane | 0 |
| Rhizosphere | 86.47 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0495645_0057217 | 3300046543 | Bacteria | 2831 |
| 2 | Ga0070714_100079277 | 3300005435 | Bacteria | 2855 |
| 3 | Ga0070713_100016990 | 3300005436 | Bacteria | 5486 |
| 4 | Ga0070713_100106626 | 3300005436 | Bacteria | 2436 |
| 5 | Ga0070708_100034138 | 3300005445 | Bacteria | 4424 |
| 6 | Ga0070706_100025780 | 3300005467 | Bacteria | 5410 |
| 7 | Ga0070707_100054122 | 3300005468 | Bacteria | 3847 |
| 8 | Ga0070698_100030314 | 3300005471 | Bacteria | 5609 |
| 9 | Ga0070696_100083687 | 3300005546 | Bacteria | 2263 |
| 10 | Ga0081455_10033182 | 3300005937 | Bacteria | 4642 |
| 11 | Ga0081540_1024516 | 3300005983 | Bacteria | 3499 |
| 12 | Ga0070717_10009636 | 3300006028 | Bacteria | 7270 |
| 13 | Ga0070712_100020052 | 3300006175 | Bacteria | 4370 |
| 14 | Ga0075428_100008436 | 3300006844 | Bacteria | 11431 |
| 15 | Ga0213875_10006735 | 3300021388 | Bacteria | 6003 |
| 16 | Ga0209758_1014826 | 3300025297 | Bacteria | 4103 |
| 17 | Ga0207684_10082269 | 3300025910 | Bacteria | 2742 |
| 18 | Ga0207707_10188811 | 3300025912 | Bacteria | 1798 |
| 19 | Ga0207693_10016577 | 3300025915 | Bacteria | 5885 |
| 20 | Ga0207664_10014271 | 3300025929 | Bacteria | 5730 |
| 21 | Ga0207661_10126804 | 3300025944 | Bacteria | 2181 |
| 22 | Ga0207674_10168453 | 3300026116 | Bacteria | 2144 |
| 23 | Ga0316579_10001394 | 3300031691 | Bacteria | 8758 |
| 24 | Ga0307413_10014969 | 3300031824 | Bacteria | 3960 |
| 25 | Ga0307406_10004729 | 3300031901 | Bacteria | 7416 |
| 26 | Ga0316574_0043599 | 3300035398 | Bacteria | 2772 |
| 27 | Ga0316582_0108167 | 3300036647 | Bacteria | 1848 |
| 28 | Ga0373925_0004182 | 3300037068 | Bacteria | 10956 |
| 29 | Ga0395898_0001427 | 3300037466 | Bacteria | 33941 |
| 30 | Ga0395898_0043058 | 3300037466 | Bacteria | 4450 |
| 31 | Ga0395898_0050424 | 3300037466 | Bacteria | 4073 |
| 32 | Ga0436364_0282816 | 3300037853 | Bacteria | 9948 |
| 33 | Ga0395901_0039436 | 3300038443 | Bacteria | 4887 |
| 34 | Ga0400490_39623 | 3300038726 | Bacteria | 13823 |
| 35 | Ga0400491_20526 | 3300038727 | Bacteria | 3128 |
| 36 | Ga0466966_0001408 | 3300044684 | Bacteria | 15482 |
| 37 | Ga0466963_0000287 | 3300044694 | Bacteria | 22688 |
| 38 | Ga0453684_0028748 | 3300044712 | Archaea | 7917 |
| 39 | Ga0466971_0001840 | 3300044719 | Bacteria | 9019 |
| 40 | Ga0466971_0013737 | 3300044719 | Bacteria | 3560 |
| 41 | Ga0466957_0003570 | 3300044842 | Bacteria | 8572 |
| 42 | Ga0466959_0001144 | 3300045049 | Bacteria | 16004 |
| 43 | Ga0466959_0021814 | 3300045049 | Bacteria | 4727 |
| 44 | Ga0451576_0184413 | 3300045051 | Archaea | 2179 |
| 45 | Ga0466958_0000965 | 3300045836 | Bacteria | 13000 |
| 46 | Ga0466958_0007299 | 3300045836 | Bacteria | 6070 |
| 47 | Ga0466967_0001289 | 3300045976 | Bacteria | 14269 |
| 48 | Ga0495603_0002238 | 3300046455 | Bacteria | 11369 |
| 49 | Ga0495603_0028835 | 3300046455 | Bacteria | 3349 |
| 50 | Ga0495629_0000478 | 3300046459 | Bacteria | 33581 |
| 51 | Ga0495629_0004455 | 3300046459 | Bacteria | 10495 |
| 52 | Ga0495585_0054755 | 3300046492 | Bacteria | 2205 |
| 53 | Ga0495594_0001012 | 3300046499 | Bacteria | 14654 |
| 54 | Ga0495625_0069970 | 3300046660 | Bacteria | 2465 |
| 55 | Ga0495613_0002819 | 3300046689 | Bacteria | 13043 |
| 56 | Ga0495624_0031006 | 3300046690 | Bacteria | 3480 |
| 57 | Ga0495589_0004249 | 3300046794 | Bacteria | 7661 |
| 58 | Ga0495636_0001511 | 3300047318 | Bacteria | 8823 |
| 59 | Ga0495676_0002876 | 3300047321 | Bacteria | 15528 |
| 60 | Ga0495676_0041689 | 3300047321 | Bacteria | 3775 |
| 61 | Ga0495680_0140594 | 3300047322 | Bacteria | 1767 |
| 62 | Ga0495685_002349 | 3300047447 | Bacteria | 5914 |
| 63 | Ga0495685_004613 | 3300047447 | Bacteria | 4464 |
| 64 | Ga0495593_0093088 | 3300047673 | Bacteria | 1551 |
| 65 | Ga0495614_0000807 | 3300048089 | Bacteria | 13258 |
| 66 | Ga0501031_0042311 | 3300049568 | Bacteria | 2974 |
| 67 | Ga0501033_0001395 | 3300049570 | Bacteria | 21458 |
| 68 | Ga0501033_0011470 | 3300049570 | Bacteria | 6782 |
| 69 | Ga0501034_0005585 | 3300049571 | Bacteria | 13698 |
| 70 | Ga0501034_0028636 | 3300049571 | Bacteria | 5669 |
| 71 | Ga0501036_0000708 | 3300049572 | Bacteria | 24642 |
| 72 | Ga0501036_0041522 | 3300049572 | Bacteria | 3891 |
| 73 | Ga0501039_0003589 | 3300049575 | Bacteria | 11632 |
| 74 | Ga0501040_0030789 | 3300049576 | Bacteria | 3625 |
| 75 | Ga0501042_0007504 | 3300049578 | Bacteria | 7149 |
| 76 | Ga0501042_0013062 | 3300049578 | Bacteria | 5646 |
| 77 | Ga0501042_0024943 | 3300049578 | Bacteria | 4196 |
| 78 | Ga0501042_0038611 | 3300049578 | Bacteria | 3390 |
| 79 | Ga0501042_0056070 | 3300049578 | Bacteria | 2812 |
| 80 | Ga0501043_0002101 | 3300049579 | Bacteria | 17012 |
| 81 | Ga0501047_0104106 | 3300049581 | Bacteria | 2718 |
| 82 | Ga0501047_0123523 | 3300049581 | Bacteria | 2469 |
| 83 | Ga0501048_0035471 | 3300049582 | Bacteria | 3591 |
| 84 | Ga0501068_0063324 | 3300049584 | Bacteria | 2250 |
| 85 | Ga0501070_0002708 | 3300049586 | Bacteria | 15474 |
| 86 | Ga0501070_0175085 | 3300049586 | Bacteria | 1767 |
| 87 | Ga0501072_0024018 | 3300049588 | Bacteria | 4739 |
| 88 | Ga0501072_0067718 | 3300049588 | Archaea | 2817 |
| 89 | Ga0501074_0000866 | 3300049590 | Bacteria | 19298 |
| 90 | Ga0501075_0039666 | 3300049591 | Bacteria | 3524 |
| 91 | Ga0501076_0007299 | 3300049592 | Bacteria | 8043 |
| 92 | Ga0501076_0022123 | 3300049592 | Bacteria | 4885 |
| 93 | Ga0501079_0033632 | 3300049741 | Bacteria | 3944 |
| 94 | Ga0501079_0037860 | 3300049741 | Bacteria | 3719 |
| 95 | Ga0501080_0117811 | 3300049742 | Bacteria | 2462 |
| 96 | Ga0501081_0023580 | 3300049743 | Bacteria | 4125 |
| 97 | Ga0501035_0004440 | 3300049822 | Bacteria | 13308 |
| 98 | Ga0501035_0040872 | 3300049822 | Bacteria | 4189 |
| 99 | Ga0501035_0086943 | 3300049822 | Bacteria | 2755 |
| 100 | Ga0501045_0053636 | 3300049824 | Bacteria | 2946 |
| 101 | nmdc:mga06r32_98222_c1 | 3300050510 | Bacteria | 2870 |
| 102 | nmdc:mga0n895_97221_c1 | 3300050512 | Bacteria | 2950 |
| 103 | Ga0500560_009873 | 3300053107 | Bacteria | 2365 |
| 104 | Ga0500573_0006163 | 3300053140 | Bacteria | 6465 |
| 105 | Ga0501084_0006635 | 3300054114 | Bacteria | 9520 |
| 106 | Ga0501082_0024187 | 3300060353 | Bacteria | 5239 |
| 107 | Ga0466962_0002718 | 3300061719 | Bacteria | 8406 |
| 108 | Ga0530510_0018265 | 3300061734 | Bacteria | 4972 |
| 109 | 2515758694 | 2515154137 | Bacteria | 5711575 |
| 110 | 2515855537 | 2515154155 | Bacteria | 7985436 |
| 111 | 2516092004 | 2515154203 | Bacteria | 5458536 |
| 112 | 2554257654 | 2554235005 | Bacteria | 6457341 |
| 113 | 2559432645 | 2558860280 | Bacteria | 11429938 |
| 114 | 2585300069 | 2582581312 | Bacteria | 7308206 |
| 115 | 2676496021 | 2675903060 | Bacteria | 10051191 |
| 116 | 2776374712 | 2775506925 | Bacteria | 7237746 |
| 117 | 2827629063 | 2827628540 | Bacteria | 6858585 |
| 118 | 2858872568 | 2858868258 | Bacteria | 7683772 |
| 119 | 2863071593 | 2863067949 | Bacteria | 8541735 |
| 120 | 2863073556 | 2863067949 | Bacteria | 8541735 |
| 121 | 2867307850 | 2867302475 | Bacteria | 7087181 |
| 122 | 2867315227 | 2867312974 | Bacteria | 7058875 |
| 123 | 2867319776 | 2867319477 | Bacteria | 7069771 |
| 124 | 2867507185 | 2867507094 | Bacteria | 6506033 |
| 125 | 2891401011 | 2891395885 | Bacteria | 9251614 |
| 126 | 2902586072 | 2902582711 | Bacteria | 6187705 |
| 127 | 2996224253 | 2996221748 | Bacteria | 6799777 |
| 128 | 2997608497 | 2997600082 | Bacteria | 9896405 |
| 129 | 3006498211 | 3006493962 | Bacteria | 8825450 |
| 130 | 8054164598 | 8054160619 | Bacteria | 7783213 |
| 131 | 8055414701 | 8055412473 | Bacteria | 6257500 |
| 132 | 8056214284 | 8056207758 | Bacteria | 8639239 |
| 133 | 8056830842 | 8056829672 | Bacteria | 9045328 |
| 134 | Ga0495645_0057217 | |||
| 135 | Ga0070714_100079277 | |||
| 136 | Ga0070713_100016990 | |||
| 137 | Ga0070713_100106626 | |||
| 138 | Ga0070708_100034138 | |||
| 139 | Ga0070706_100025780 | |||
| 140 | Ga0070707_100054122 | |||
| 141 | Ga0070698_100030314 | |||
| 142 | Ga0070696_100083687 | |||
| 143 | Ga0081455_10033182 | |||
| 144 | Ga0081540_1024516 | |||
| 145 | Ga0070717_10009636 | |||
| 146 | Ga0070712_100020052 | |||
| 147 | Ga0075428_100008436 | |||
| 148 | Ga0213875_10006735 | |||
| 149 | Ga0209758_1014826 | |||
| 150 | Ga0207684_10082269 | |||
| 151 | Ga0207707_10188811 | |||
| 152 | Ga0207693_10016577 | |||
| 153 | Ga0207664_10014271 | |||
| 154 | Ga0207661_10126804 | |||
| 155 | Ga0207674_10168453 | |||
| 156 | Ga0316579_10001394 | |||
| 157 | Ga0307413_10014969 | |||
| 158 | Ga0307406_10004729 | |||
| 159 | Ga0316574_0043599 | |||
| 160 | Ga0316582_0108167 | |||
| 161 | Ga0373925_0004182 | |||
| 162 | Ga0395898_0001427 | |||
| 163 | Ga0395898_0043058 | |||
| 164 | Ga0395898_0050424 | |||
| 165 | Ga0436364_0282816 | |||
| 166 | Ga0395901_0039436 | |||
| 167 | Ga0400490_39623 | |||
| 168 | Ga0400491_20526 | |||
| 169 | Ga0466966_0001408 | |||
| 170 | Ga0466963_0000287 | |||
| 171 | Ga0453684_0028748 | |||
| 172 | Ga0466971_0001840 | |||
| 173 | Ga0466971_0013737 | |||
| 174 | Ga0466957_0003570 | |||
| 175 | Ga0466959_0001144 | |||
| 176 | Ga0466959_0021814 | |||
| 177 | Ga0451576_0184413 | |||
| 178 | Ga0466958_0000965 | |||
| 179 | Ga0466958_0007299 | |||
| 180 | Ga0466967_0001289 | |||
| 181 | Ga0495603_0002238 | |||
| 182 | Ga0495603_0028835 | |||
| 183 | Ga0495629_0000478 | |||
| 184 | Ga0495629_0004455 | |||
| 185 | Ga0495585_0054755 | |||
| 186 | Ga0495594_0001012 | |||
| 187 | Ga0495625_0069970 | |||
| 188 | Ga0495613_0002819 | |||
| 189 | Ga0495624_0031006 | |||
| 190 | Ga0495589_0004249 | |||
| 191 | Ga0495636_0001511 | |||
| 192 | Ga0495676_0002876 | |||
| 193 | Ga0495676_0041689 | |||
| 194 | Ga0495680_0140594 | |||
| 195 | Ga0495685_002349 | |||
| 196 | Ga0495685_004613 | |||
| 197 | Ga0495593_0093088 | |||
| 198 | Ga0495614_0000807 | |||
| 199 | Ga0501031_0042311 | |||
| 200 | Ga0501033_0001395 | |||
| 201 | Ga0501033_0011470 | |||
| 202 | Ga0501034_0005585 | |||
| 203 | Ga0501034_0028636 | |||
| 204 | Ga0501036_0000708 | |||
| 205 | Ga0501036_0041522 | |||
| 206 | Ga0501039_0003589 | |||
| 207 | Ga0501040_0030789 | |||
| 208 | Ga0501042_0007504 | |||
| 209 | Ga0501042_0013062 | |||
| 210 | Ga0501042_0024943 | |||
| 211 | Ga0501042_0038611 | |||
| 212 | Ga0501042_0056070 | |||
| 213 | Ga0501043_0002101 | |||
| 214 | Ga0501047_0104106 | |||
| 215 | Ga0501047_0123523 | |||
| 216 | Ga0501048_0035471 | |||
| 217 | Ga0501068_0063324 | |||
| 218 | Ga0501070_0002708 | |||
| 219 | Ga0501070_0175085 | |||
| 220 | Ga0501072_0024018 | |||
| 221 | Ga0501072_0067718 | |||
| 222 | Ga0501074_0000866 | |||
| 223 | Ga0501075_0039666 | |||
| 224 | Ga0501076_0007299 | |||
| 225 | Ga0501076_0022123 | |||
| 226 | Ga0501079_0033632 | |||
| 227 | Ga0501079_0037860 | |||
| 228 | Ga0501080_0117811 | |||
| 229 | Ga0501081_0023580 | |||
| 230 | Ga0501035_0004440 | |||
| 231 | Ga0501035_0040872 | |||
| 232 | Ga0501035_0086943 | |||
| 233 | Ga0501045_0053636 | |||
| 234 | nmdc:mga06r32_98222_c1 | |||
| 235 | nmdc:mga0n895_97221_c1 | |||
| 236 | Ga0500560_009873 | |||
| 237 | Ga0500573_0006163 | |||
| 238 | Ga0501084_0006635 | |||
| 239 | Ga0501082_0024187 | |||
| 240 | Ga0466962_0002718 | |||
| 241 | Ga0530510_0018265 | |||
| 242 | 2515758694 | |||
| 243 | 2515855537 | |||
| 244 | 2516092004 | |||
| 245 | 2554257654 | |||
| 246 | 2559432645 | |||
| 247 | 2585300069 | |||
| 248 | 2676496021 | |||
| 249 | 2776374712 | |||
| 250 | 2827629063 | |||
| 251 | 2858872568 | |||
| 252 | 2863071593 | |||
| 253 | 2863073556 | |||
| 254 | 2867307850 | |||
| 255 | 2867315227 | |||
| 256 | 2867319776 | |||
| 257 | 2867507185 | |||
| 258 | 2891401011 | |||
| 259 | 2902586072 | |||
| 260 | 2996224253 | |||
| 261 | 2997608497 | |||
| 262 | 3006498211 | |||
| 263 | 8054164598 | |||
| 264 | 8055414701 | |||
| 265 | 8056214284 | |||
| 266 | 8056830842 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8dcb-assembly2.cif.gz_B | rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp | 0.9835 | 2 | 471 |
| 8dcb-assembly2.cif.gz_B | rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp | 0.9794 | 2 | 471 |
| 4dwr-assembly3.cif.gz_C | rna ligase rtcb/mn2+ complex | 0.9714 | 2 | 471 |
| 4dwr-assembly3.cif.gz_C | rna ligase rtcb/mn2+ complex | 0.9674 | 2 | 471 |
| 7p3b-assembly2.cif.gz_B | human rna ligase rtcb in complex with gmp and co(ii) | 0.9603 | 3 | 471 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1uc2A00 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.984 | 2 | 471 | 3.90.1860.10 |
| 1uc2A00 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.9799 | 2 | 471 | 3.90.1860.10 |
| af_Q58095_565_968_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.9784 | 95 | 471 | 3.90.1860.10 |
| af_Q99LF4_9_505_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.9739 | 3 | 471 | 3.90.1860.10 |
| af_Q99LF4_9_505_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.9678 | 3 | 471 | 3.90.1860.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A160NVV1-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9963 | 91 | 471 |
GO:0003972
GO:0005525 GO:0006396 GO:0042245 GO:0046872 GO:0170057 |
| AF-A0A3D5DPA2-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9962 | 69 | 444 |
GO:0003972
GO:0005525 GO:0006396 GO:0042245 GO:0046872 GO:0170057 |
| AF-A0A7X0U0W4-F1-model_v4 | tRNA-splicing ligase RtcB (EC 6.5.1.-) | 0.9958 | 2 | 471 |
GO:0003972
GO:0005525 GO:0006396 GO:0042245 GO:0046872 |
| AF-A0A7I7MT23-F1-model_v4 | tRNA-splicing ligase RtcB (EC 6.5.1.-) | 0.9956 | 1 | 471 |
GO:0003972
GO:0005525 GO:0006396 GO:0042245 GO:0046872 GO:0170057 |
| AF-A0A2A7MP50-F1-model_v4 | tRNA-splicing ligase RtcB (EC 6.5.1.-) | 0.9955 | 1 | 471 |
GO:0003972
GO:0005525 GO:0006396 GO:0042245 GO:0046872 GO:0170057 |