F157232
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 133 | 110 | 266 | 296 |
Family's Representative Sequence
| Representative Sequence | 3300042145|Ga0450906_016284|Ga0450906_016284_292_1284 |
| Length | 330 |
| Sequence | MVSTHCCTKATPAEACAQKKQNNRLPDCAFGHDMAMTAQLSKIEQVFSGTPPRVSFEFFPPKTAEMEEKLWQTITTLAPLDPTFVSVTYGAGGSTRERTHQTVVRMAQETSLKPAAHLTCVGATRAEVDDIAQAYWQAGIRHIVALRGDPQDGNTSYIPHPGGYAWASELVAGLKRIADFEISVAAFPEGHPETRTVEADLDNLARKVEAGATRAITQYFFDVDLYLDYVRKARERGITIPILPGLLPVTNFQQVQKFSAMCGASVPRWLEKLFTGLDSNPAHRNHVAVIVAAEQCRILREAGVDDFHFYTLNRADLTLALCHILGVRAK |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300042145 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 | Metagenome | Rhizosphere |
| 2 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 3 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 5 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 6 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 8 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 9 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 11 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 13 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 14 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 15 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 17 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 18 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 19 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 20 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 28 | 3300021441 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 | Metagenome | Rhizosphere |
| 29 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 30 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300028017 | Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 | Metagenome | Rhizosphere |
| 46 | 3300028653 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG | Metagenome | Rhizosphere |
| 47 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 48 | 3300030763 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 49 | 3300030878 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 50 | 3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 51 | 3300031239 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG | Metagenome | Rhizosphere |
| 52 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 53 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 54 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 55 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 56 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 57 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 58 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 59 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 60 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 61 | 3300032120 | Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 62 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 63 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 64 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 65 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 66 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 67 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 68 | 3300037588 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA | Metagenome | Rhizosphere |
| 69 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 70 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 71 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 72 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 73 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 74 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 75 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 76 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 77 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 78 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046681 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 84 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 85 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 86 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 87 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 88 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 89 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 90 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 91 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 92 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 93 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 94 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 95 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 96 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 97 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 98 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 99 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 100 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 101 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 102 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 104 | 3300053131 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere | Metagenome | Endosphere |
| 105 | 3300053146 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere | Metagenome | Endosphere |
| 106 | 3300053731 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere | Metagenome | Endosphere |
| 107 | 2738541281 | Methylobacterium sp. GV094 | Isolate | Unclassified |
| 108 | 2738543032 | Methylobacterium sp. GV104 | Isolate | Unclassified |
| 109 | 2842698319 | Methylobacterium sp. R-72139 | Isolate | Unclassified |
| 110 | 2883354860 | Hypericibacter adhaerens R5959 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 93.98 |
| Metatranscriptomes | 3.01 |
| Isolates | 3.01 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 9.02 |
| Nodule | 0 |
| Rhizoplane | 10.53 |
| Rhizosphere | 72.93 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 6.02 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0450906_016284 | 3300042145 | Bacteria | 1347 |
| 2 | Ga0055536_1006285 | 3300003781 | Bacteria | 5588 |
| 3 | Ga0070676_10032572 | 3300005328 | Unclassified | 2987 |
| 4 | Ga0070690_100373098 | 3300005330 | Bacteria | 1041 |
| 5 | Ga0068868_100193572 | 3300005338 | Bacteria | 1692 |
| 6 | Ga0070667_100159633 | 3300005367 | Unclassified | 1985 |
| 7 | Ga0070700_100463696 | 3300005441 | Bacteria | 967 |
| 8 | Ga0070707_100385589 | 3300005468 | Bacteria | 1361 |
| 9 | Ga0070698_100017047 | 3300005471 | Bacteria | 7659 |
| 10 | Ga0070697_100041582 | 3300005536 | Bacteria | 3721 |
| 11 | Ga0070702_100028810 | 3300005615 | Bacteria | 3013 |
| 12 | Ga0068866_10008528 | 3300005718 | Bacteria | 4324 |
| 13 | Ga0068861_100345933 | 3300005719 | Unclassified | 1302 |
| 14 | Ga0081455_10000540 | 3300005937 | Bacteria | 49195 |
| 15 | Ga0070717_10003188 | 3300006028 | Bacteria | 11714 |
| 16 | Ga0075365_10097360 | 3300006038 | Bacteria | 2011 |
| 17 | Ga0075364_10033068 | 3300006051 | Bacteria | 3327 |
| 18 | Ga0075364_10042056 | 3300006051 | Bacteria | 2968 |
| 19 | Ga0097621_100125301 | 3300006237 | Bacteria | 2182 |
| 20 | Ga0068871_100144124 | 3300006358 | Bacteria | 2027 |
| 21 | Ga0105240_10178335 | 3300009093 | Bacteria | 2510 |
| 22 | Ga0105245_10271395 | 3300009098 | Bacteria | 1655 |
| 23 | Ga0105242_10048302 | 3300009176 | Bacteria | 3459 |
| 24 | Ga0105248_10127242 | 3300009177 | Bacteria | 2874 |
| 25 | Ga0157372_10344979 | 3300013307 | Bacteria | 1735 |
| 26 | Ga0157375_10430215 | 3300013308 | Bacteria | 1486 |
| 27 | Ga0157380_10110163 | 3300014326 | Bacteria | 2312 |
| 28 | Ga0213875_10000124 | 3300021388 | Bacteria | 86711 |
| 29 | Ga0213871_10039534 | 3300021441 | Bacteria | 1263 |
| 30 | Ga0209676_1000026 | 3300025292 | Bacteria | 574599 |
| 31 | Ga0207695_10059517 | 3300025913 | Bacteria | 3960 |
| 32 | Ga0207693_10062033 | 3300025915 | Bacteria | 2928 |
| 33 | Ga0207663_10190788 | 3300025916 | Bacteria | 1471 |
| 34 | Ga0207662_10010555 | 3300025918 | Bacteria | 5105 |
| 35 | Ga0207700_10025367 | 3300025928 | Bacteria | 4115 |
| 36 | Ga0207706_10322174 | 3300025933 | Bacteria | 1345 |
| 37 | Ga0207686_10035213 | 3300025934 | Bacteria | 3003 |
| 38 | Ga0207709_10022773 | 3300025935 | Bacteria | 3557 |
| 39 | Ga0207669_10016687 | 3300025937 | Bacteria | 3740 |
| 40 | Ga0207704_10068717 | 3300025938 | Bacteria | 2235 |
| 41 | Ga0207711_10126243 | 3300025941 | Bacteria | 2289 |
| 42 | Ga0207702_10258812 | 3300026078 | Bacteria | 1637 |
| 43 | Ga0207648_10018929 | 3300026089 | Bacteria | 6220 |
| 44 | Ga0207675_100153540 | 3300026118 | Unclassified | 2193 |
| 45 | Ga0207698_10674264 | 3300026142 | Bacteria | 1026 |
| 46 | Ga0265356_1000645 | 3300028017 | Bacteria | 6071 |
| 47 | Ga0265323_10005257 | 3300028653 | Bacteria | 5501 |
| 48 | Ga0265338_10006963 | 3300028800 | Bacteria | 14211 |
| 49 | Ga0265338_10250215 | 3300028800 | Bacteria | 1308 |
| 50 | Ga0265338_10262387 | 3300028800 | Bacteria | 1269 |
| 51 | Ga0265763_1002361 | 3300030763 | Unclassified | 1444 |
| 52 | Ga0265770_1001290 | 3300030878 | Bacteria | 3462 |
| 53 | Ga0265760_10008639 | 3300031090 | Bacteria | 2910 |
| 54 | Ga0265328_10000064 | 3300031239 | Bacteria | 61391 |
| 55 | Ga0265331_10009451 | 3300031250 | Bacteria | 5473 |
| 56 | Ga0265327_10000071 | 3300031251 | Bacteria | 215502 |
| 57 | Ga0265327_10036513 | 3300031251 | Bacteria | 2700 |
| 58 | Ga0265316_10060020 | 3300031344 | Bacteria | 2956 |
| 59 | Ga0265313_10022974 | 3300031595 | Bacteria | 3369 |
| 60 | Ga0316575_10008818 | 3300031665 | Bacteria | 3681 |
| 61 | Ga0265342_10027444 | 3300031712 | Bacteria | 3558 |
| 62 | Ga0316576_10016124 | 3300031727 | Bacteria | 5038 |
| 63 | Ga0316576_10173324 | 3300031727 | Bacteria | 1628 |
| 64 | Ga0307516_10000067 | 3300031730 | Bacteria | 111575 |
| 65 | Ga0307410_10166972 | 3300031852 | Bacteria | 1655 |
| 66 | Ga0316053_101007 | 3300032120 | Bacteria | 1419 |
| 67 | Ga0316583_10004703 | 3300032133 | Bacteria | 4872 |
| 68 | Ga0373955_0082715 | 3300035172 | Bacteria | 1817 |
| 69 | Ga0316574_0034510 | 3300035398 | Bacteria | 3085 |
| 70 | Ga0373935_0108220 | 3300035692 | Bacteria | 1842 |
| 71 | Ga0373937_0020873 | 3300036401 | Bacteria | 5874 |
| 72 | Ga0373937_0160475 | 3300036401 | Bacteria | 2108 |
| 73 | Ga0373937_0920408 | 3300036401 | Bacteria | 823 |
| 74 | Ga0373925_0456755 | 3300037068 | Bacteria | 1046 |
| 75 | Ga0316581_0002747 | 3300037588 | Bacteria | 4270 |
| 76 | Ga0436364_1018218 | 3300037853 | Bacteria | 1251 |
| 77 | Ga0436364_1171513 | 3300037853 | Bacteria | 122046 |
| 78 | Ga0395901_0152761 | 3300038443 | Bacteria | 2425 |
| 79 | Ga0436365_1599232 | 3300039437 | Bacteria | 1137 |
| 80 | Ga0436360_0008827 | 3300039438 | Bacteria | 1471 |
| 81 | Ga0436360_0392874 | 3300039438 | Bacteria | 2773 |
| 82 | Ga0436360_0469320 | 3300039438 | Bacteria | 2653 |
| 83 | Ga0436360_0621779 | 3300039438 | Bacteria | 3322 |
| 84 | Ga0436360_0793118 | 3300039438 | Bacteria | 1889 |
| 85 | Ga0436360_1185321 | 3300039438 | Unclassified | 940 |
| 86 | Ga0436362_0094849 | 3300039453 | Bacteria | 2216 |
| 87 | Ga0436362_0096849 | 3300039453 | Bacteria | 3604 |
| 88 | Ga0451577_0000001 | 3300042876 | Bacteria | 2461803 |
| 89 | Ga0451577_0026866 | 3300042876 | Bacteria | 5211 |
| 90 | Ga0453684_0000015 | 3300044712 | Bacteria | 969198 |
| 91 | Ga0453684_0000020 | 3300044712 | Bacteria | 879938 |
| 92 | Ga0453684_0442529 | 3300044712 | Bacteria | 1448 |
| 93 | Ga0466968_0033602 | 3300044735 | Bacteria | 2137 |
| 94 | Ga0451576_0006026 | 3300045051 | Bacteria | 14976 |
| 95 | Ga0451576_0021915 | 3300045051 | Bacteria | 6936 |
| 96 | Ga0451576_0069413 | 3300045051 | Bacteria | 3667 |
| 97 | Ga0495667_0149072 | 3300046559 | Bacteria | 1506 |
| 98 | Ga0495647_0090411 | 3300046681 | Bacteria | 1255 |
| 99 | Ga0495658_0212381 | 3300046683 | Bacteria | 1210 |
| 100 | Ga0495674_0210260 | 3300047319 | Bacteria | 1612 |
| 101 | Ga0495602_0125249 | 3300048088 | Bacteria | 2060 |
| 102 | Ga0496100_0310686 | 3300048903 | Bacteria | 1182 |
| 103 | Ga0496101_0039499 | 3300048904 | Bacteria | 3357 |
| 104 | Ga0496102_0238693 | 3300048905 | Bacteria | 1714 |
| 105 | Ga0496104_0098875 | 3300048907 | Bacteria | 2793 |
| 106 | Ga0496107_0043073 | 3300048910 | Bacteria | 3243 |
| 107 | Ga0496107_0105165 | 3300048910 | Bacteria | 2072 |
| 108 | Ga0496108_0398662 | 3300048911 | Unclassified | 1202 |
| 109 | Ga0496109_0375617 | 3300048912 | Unclassified | 1343 |
| 110 | Ga0496111_0033839 | 3300048914 | Bacteria | 3646 |
| 111 | Ga0496111_0268257 | 3300048914 | Bacteria | 1266 |
| 112 | Ga0496114_0002695 | 3300048917 | Bacteria | 13569 |
| 113 | Ga0496114_0020270 | 3300048917 | Bacteria | 5395 |
| 114 | Ga0496115_0011697 | 3300048918 | Bacteria | 6588 |
| 115 | Ga0496115_0210777 | 3300048918 | Bacteria | 1605 |
| 116 | Ga0496122_0043115 | 3300048925 | Bacteria | 3539 |
| 117 | Ga0496124_0054882 | 3300048927 | Bacteria | 3370 |
| 118 | Ga0501034_0226818 | 3300049571 | Bacteria | 1819 |
| 119 | Ga0501039_0133707 | 3300049575 | Bacteria | 1947 |
| 120 | Ga0501041_0048271 | 3300049577 | Bacteria | 2593 |
| 121 | nmdc:mga03683_40202_c1 | 3300050489 | Bacteria | 1917 |
| 122 | nmdc:mga00v17_12921_c1 | 3300050491 | Bacteria | 4622 |
| 123 | nmdc:mga0yw44_38772_c1 | 3300050492 | Bacteria | 2821 |
| 124 | nmdc:mga06r32_454632_c1 | 3300050510 | Bacteria | 1260 |
| 125 | Ga0495619_0123421 | 3300053085 | Bacteria | 1776 |
| 126 | Ga0500595_002674 | 3300053119 | Bacteria | 8663 |
| 127 | Ga0500652_000014 | 3300053131 | Bacteria | 147740 |
| 128 | Ga0500588_0003502 | 3300053146 | Bacteria | 3319 |
| 129 | Ga0500609_006513 | 3300053731 | Bacteria | 1592 |
| 130 | 2738744489 | 2738541281 | Bacteria | 5112672 |
| 131 | 2739353719 | 2738543032 | Bacteria | 5115625 |
| 132 | 2842700892 | 2842698319 | Bacteria | 5190321 |
| 133 | 2883357194 | 2883354860 | Bacteria | 5865246 |
| 134 | Ga0450906_016284 | |||
| 135 | Ga0055536_1006285 | |||
| 136 | Ga0070676_10032572 | |||
| 137 | Ga0070690_100373098 | |||
| 138 | Ga0068868_100193572 | |||
| 139 | Ga0070667_100159633 | |||
| 140 | Ga0070700_100463696 | |||
| 141 | Ga0070707_100385589 | |||
| 142 | Ga0070698_100017047 | |||
| 143 | Ga0070697_100041582 | |||
| 144 | Ga0070702_100028810 | |||
| 145 | Ga0068866_10008528 | |||
| 146 | Ga0068861_100345933 | |||
| 147 | Ga0081455_10000540 | |||
| 148 | Ga0070717_10003188 | |||
| 149 | Ga0075365_10097360 | |||
| 150 | Ga0075364_10033068 | |||
| 151 | Ga0075364_10042056 | |||
| 152 | Ga0097621_100125301 | |||
| 153 | Ga0068871_100144124 | |||
| 154 | Ga0105240_10178335 | |||
| 155 | Ga0105245_10271395 | |||
| 156 | Ga0105242_10048302 | |||
| 157 | Ga0105248_10127242 | |||
| 158 | Ga0157372_10344979 | |||
| 159 | Ga0157375_10430215 | |||
| 160 | Ga0157380_10110163 | |||
| 161 | Ga0213875_10000124 | |||
| 162 | Ga0213871_10039534 | |||
| 163 | Ga0209676_1000026 | |||
| 164 | Ga0207695_10059517 | |||
| 165 | Ga0207693_10062033 | |||
| 166 | Ga0207663_10190788 | |||
| 167 | Ga0207662_10010555 | |||
| 168 | Ga0207700_10025367 | |||
| 169 | Ga0207706_10322174 | |||
| 170 | Ga0207686_10035213 | |||
| 171 | Ga0207709_10022773 | |||
| 172 | Ga0207669_10016687 | |||
| 173 | Ga0207704_10068717 | |||
| 174 | Ga0207711_10126243 | |||
| 175 | Ga0207702_10258812 | |||
| 176 | Ga0207648_10018929 | |||
| 177 | Ga0207675_100153540 | |||
| 178 | Ga0207698_10674264 | |||
| 179 | Ga0265356_1000645 | |||
| 180 | Ga0265323_10005257 | |||
| 181 | Ga0265338_10006963 | |||
| 182 | Ga0265338_10250215 | |||
| 183 | Ga0265338_10262387 | |||
| 184 | Ga0265763_1002361 | |||
| 185 | Ga0265770_1001290 | |||
| 186 | Ga0265760_10008639 | |||
| 187 | Ga0265328_10000064 | |||
| 188 | Ga0265331_10009451 | |||
| 189 | Ga0265327_10000071 | |||
| 190 | Ga0265327_10036513 | |||
| 191 | Ga0265316_10060020 | |||
| 192 | Ga0265313_10022974 | |||
| 193 | Ga0316575_10008818 | |||
| 194 | Ga0265342_10027444 | |||
| 195 | Ga0316576_10016124 | |||
| 196 | Ga0316576_10173324 | |||
| 197 | Ga0307516_10000067 | |||
| 198 | Ga0307410_10166972 | |||
| 199 | Ga0316053_101007 | |||
| 200 | Ga0316583_10004703 | |||
| 201 | Ga0373955_0082715 | |||
| 202 | Ga0316574_0034510 | |||
| 203 | Ga0373935_0108220 | |||
| 204 | Ga0373937_0020873 | |||
| 205 | Ga0373937_0160475 | |||
| 206 | Ga0373937_0920408 | |||
| 207 | Ga0373925_0456755 | |||
| 208 | Ga0316581_0002747 | |||
| 209 | Ga0436364_1018218 | |||
| 210 | Ga0436364_1171513 | |||
| 211 | Ga0395901_0152761 | |||
| 212 | Ga0436365_1599232 | |||
| 213 | Ga0436360_0008827 | |||
| 214 | Ga0436360_0392874 | |||
| 215 | Ga0436360_0469320 | |||
| 216 | Ga0436360_0621779 | |||
| 217 | Ga0436360_0793118 | |||
| 218 | Ga0436360_1185321 | |||
| 219 | Ga0436362_0094849 | |||
| 220 | Ga0436362_0096849 | |||
| 221 | Ga0451577_0000001 | |||
| 222 | Ga0451577_0026866 | |||
| 223 | Ga0453684_0000015 | |||
| 224 | Ga0453684_0000020 | |||
| 225 | Ga0453684_0442529 | |||
| 226 | Ga0466968_0033602 | |||
| 227 | Ga0451576_0006026 | |||
| 228 | Ga0451576_0021915 | |||
| 229 | Ga0451576_0069413 | |||
| 230 | Ga0495667_0149072 | |||
| 231 | Ga0495647_0090411 | |||
| 232 | Ga0495658_0212381 | |||
| 233 | Ga0495674_0210260 | |||
| 234 | Ga0495602_0125249 | |||
| 235 | Ga0496100_0310686 | |||
| 236 | Ga0496101_0039499 | |||
| 237 | Ga0496102_0238693 | |||
| 238 | Ga0496104_0098875 | |||
| 239 | Ga0496107_0043073 | |||
| 240 | Ga0496107_0105165 | |||
| 241 | Ga0496108_0398662 | |||
| 242 | Ga0496109_0375617 | |||
| 243 | Ga0496111_0033839 | |||
| 244 | Ga0496111_0268257 | |||
| 245 | Ga0496114_0002695 | |||
| 246 | Ga0496114_0020270 | |||
| 247 | Ga0496115_0011697 | |||
| 248 | Ga0496115_0210777 | |||
| 249 | Ga0496122_0043115 | |||
| 250 | Ga0496124_0054882 | |||
| 251 | Ga0501034_0226818 | |||
| 252 | Ga0501039_0133707 | |||
| 253 | Ga0501041_0048271 | |||
| 254 | nmdc:mga03683_40202_c1 | |||
| 255 | nmdc:mga00v17_12921_c1 | |||
| 256 | nmdc:mga0yw44_38772_c1 | |||
| 257 | nmdc:mga06r32_454632_c1 | |||
| 258 | Ga0495619_0123421 | |||
| 259 | Ga0500595_002674 | |||
| 260 | Ga0500652_000014 | |||
| 261 | Ga0500588_0003502 | |||
| 262 | Ga0500609_006513 | |||
| 263 | 2738744489 | |||
| 264 | 2739353719 | |||
| 265 | 2842700892 | |||
| 266 | 2883357194 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1b5t-assembly1.cif.gz_C | escherichia coli methylenetetrahydrofolate reductase | 0.9724 | 10 | 288 |
| 1zpt-assembly1.cif.gz_A | escherichia coli methylenetetrahydrofolate reductase (reduced) complexed with nadh, ph 7.25 | 0.9706 | 7 | 287 |
| 1b5t-assembly1.cif.gz_B | escherichia coli methylenetetrahydrofolate reductase | 0.9665 | 10 | 288 |
| 1zrq-assembly3.cif.gz_B-2 | escherichia coli methylenetetrahydrofolate reductase (reduced) complexed with nadh, ph 6.0 | 0.9656 | 10 | 287 |
| 3fst-assembly1.cif.gz_E | crystal structure of escherichia coli methylenetetrahydrofolate reductase mutant phe223leu at ph 7.4 | 0.9653 | 8 | 287 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q75HE6_1_304_3.20.20.220 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9561 | 9 | 285 | 3.20.20.220 |
| 1zp3B00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9557 | 8 | 287 | 3.20.20.220 |
| af_A0A1D6GER4_1_215_3.20.20.220 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9541 | 81 | 281 | 3.20.20.220 |
| 1v93A00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9434 | 6 | 288 | 3.20.20.220 |
| af_Q9WU20_42_335_3.20.20.220 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel; | 0.9338 | 10 | 282 | 3.20.20.220 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A6P5UD17-F1-model_v4 | deleted | 0.9857 | 25 | 234 |
|
| AF-A0A520WXD6-F1-model_v4 | Methylenetetrahydrofolate reductase | 0.9856 | 80 | 289 |
GO:0005829
GO:0009086 GO:0035999 GO:0071949 GO:0106312 |
| AF-A0A6P4K4L0-F1-model_v4 | deleted | 0.985 | 57 | 289 |
|
| AF-A0A7X6EMB3-F1-model_v4 | deleted | 0.9846 | 158 | 253 |
|
| AF-A0A3M1K0G0-F1-model_v4 | Methylenetetrahydrofolate reductase | 0.9835 | 132 | 290 |
GO:0005829
GO:0009086 GO:0035999 GO:0071949 GO:0106312 |