F156346

General Info

Members Datasets Scaffolds Average Seq Length
133 103 133 335

Family's Representative Sequence

Representative Sequence 3300013306|Ga0163162_10122185|Ga0163162_101221852
Length 373
Sequence VKPLVSIIIPAYNAEHLLPETISSALCQTWPRKEIIVIDDGSRDATLSVARRFASRDVRVVTQPSQGAAAARNHGLSLSQGDYVQWLDADDLLAPDKLARQLQAVEEYRDSRTLLSCPWGRFLYRPHRASFHATSLWSDLSPADWLIRKLAHNAFMQTATWLVSRELTYAAGPWDTRMLSDDDGEYFCRVLLASTGTRFVPDTRVFYRVAGPGSLSSLGRSNRKLEALFLSMQLHVGYVRSLEDSERVRSACITYLQTGLPHFYPERMDIVERAAILAKELGGTLTQPPPISWKYAWADTLFGRRIAKRVQNVVRRTRHSLNRSWDRTMSQIHAATGPPLRSVTGARTRSDDFVNDAMHARPGATSSDRRKPS

Samples

Sample ID Description Type Environment
1 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
2 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
3 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
28 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
29 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
39 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
52 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
53 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
54 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
55 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
56 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
59 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
65 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
66 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
67 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
68 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
71 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
72 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
73 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
74 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
75 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
76 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
77 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
78 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
92 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
96 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
97 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
98 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
99 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
100 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
101 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
102 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
103 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.75
Nodule 0
Rhizoplane 0.75
Rhizosphere 98.5
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070668_100028009 3300005347 Bacteria 4276
2 Ga0070671_100017476 3300005355 Bacteria 5811
3 Ga0070671_100029991 3300005355 Bacteria 4488
4 Ga0070673_100299908 3300005364 Bacteria 1414
5 Ga0070667_100000649 3300005367 Bacteria 33783
6 Ga0070709_10153914 3300005434 Bacteria 1592
7 Ga0070714_100121453 3300005435 Unclassified 2324
8 Ga0070713_100144003 3300005436 Unclassified 2114
9 Ga0070711_100114494 3300005439 Bacteria 1985
10 Ga0070708_100066133 3300005445 Bacteria 3244
11 Ga0070681_10144967 3300005458 Bacteria 2304
12 Ga0068867_100011712 3300005459 Bacteria 6192
13 Ga0070706_100016151 3300005467 Bacteria 6893
14 Ga0070706_100031201 3300005467 Bacteria 4915
15 Ga0070707_100016601 3300005468 Bacteria 6911
16 Ga0070707_100043887 3300005468 Bacteria 4280
17 Ga0070707_100223181 3300005468 Bacteria 1835
18 Ga0070698_100043779 3300005471 Bacteria 4588
19 Ga0070699_100143935 3300005518 Unclassified 2106
20 Ga0070697_100017136 3300005536 Bacteria 5699
21 Ga0070697_100018090 3300005536 Bacteria 5554
22 Ga0070695_100174070 3300005545 Bacteria 1520
23 Ga0070702_100091044 3300005615 Bacteria 1850
24 Ga0068860_100135527 3300005843 Bacteria 2364
25 Ga0070717_10063662 3300006028 Unclassified 3062
26 Ga0068871_100024071 3300006358 Unclassified 4718
27 Ga0068871_100111394 3300006358 Bacteria 2302
28 Ga0068871_100128665 3300006358 Bacteria 2145
29 Ga0075428_100013329 3300006844 Bacteria 9145
30 Ga0075428_100131077 3300006844 Bacteria 2727
31 Ga0075430_100043172 3300006846 Bacteria 3811
32 Ga0075430_100204018 3300006846 Unclassified 1641
33 Ga0075433_10013734 3300006852 Bacteria 6596
34 Ga0075434_100006708 3300006871 Bacteria 10576
35 Ga0075434_100167099 3300006871 Bacteria 2220
36 Ga0075429_100002975 3300006880 Bacteria 14375
37 Ga0068865_100130488 3300006881 Unclassified 1882
38 Ga0075436_100056102 3300006914 Bacteria 2721
39 Ga0075435_100008146 3300007076 Bacteria 7505
40 Ga0111539_10000607 3300009094 Bacteria 46351
41 Ga0111539_10665643 3300009094 Bacteria 1212
42 Ga0105245_10044525 3300009098 Unclassified 3961
43 Ga0114129_10000163 3300009147 Bacteria 71730
44 Ga0114129_10023551 3300009147 Bacteria 8727
45 Ga0114129_10034492 3300009147 Bacteria 7148
46 Ga0105242_10010919 3300009176 Bacteria 6977
47 Ga0157374_10037822 3300013296 Unclassified 4432
48 Ga0157374_10091187 3300013296 Bacteria 2906
49 Ga0157374_10218562 3300013296 Bacteria 1870
50 Ga0157378_10141582 3300013297 Archaea 2234
51 Ga0157378_10259403 3300013297 Bacteria 1667
52 Ga0163162_10122185 3300013306 Bacteria 2709
53 Ga0163162_10317121 3300013306 Unclassified 1691
54 Ga0157375_10014007 3300013308 Bacteria 7152
55 Ga0157375_10202824 3300013308 Bacteria 2139
56 Ga0213872_10044390 3300021361 Unclassified 2023
57 Ga0207697_10005745 3300025315 Bacteria 5719
58 Ga0207684_10002868 3300025910 Bacteria 17112
59 Ga0207684_10037167 3300025910 Unclassified 4132
60 Ga0207663_10162251 3300025916 Bacteria 1579
61 Ga0207646_10036083 3300025922 Bacteria 4463
62 Ga0207644_10375778 3300025931 Unclassified 1158
63 Ga0207644_10378412 3300025931 Bacteria 1154
64 Ga0207686_10006324 3300025934 Bacteria 6370
65 Ga0207704_10092950 3300025938 Unclassified 1987
66 Ga0207658_10001155 3300025986 Bacteria 21133
67 Ga0207428_10001007 3300027907 Bacteria 31268
68 Ga0268264_10100996 3300028381 Bacteria 2507
69 Ga0265323_10055846 3300028653 Unclassified 1387
70 Ga0265338_10003517 3300028800 Bacteria 21943
71 Ga0265338_10240561 3300028800 Unclassified 1341
72 Ga0265330_10000393 3300031235 Bacteria 30125
73 Ga0265325_10006581 3300031241 Bacteria 7038
74 Ga0265339_10001485 3300031249 Bacteria 17319
75 Ga0265327_10000700 3300031251 Bacteria 53289
76 Ga0265316_10001922 3300031344 Bacteria 21826
77 Ga0265316_10002063 3300031344 Bacteria 21156
78 Ga0265313_10001858 3300031595 Bacteria 19223
79 Ga0265342_10001489 3300031712 Bacteria 21730
80 Ga0373933_0000500 3300035724 Bacteria 24431
81 Ga0373937_0000122 3300036401 Bacteria 74328
82 Ga0395900_0001362 3300037418 Bacteria 29421
83 Ga0395898_0002310 3300037466 Bacteria 22841
84 Ga0395905_0004491 3300037471 Bacteria 14472
85 Ga0395901_0002431 3300038443 Bacteria 18897
86 Ga0436361_0361682 3300039447 Bacteria 2762
87 Ga0436361_0917291 3300039447 Bacteria 1457
88 Ga0451577_0000869 3300042876 Bacteria 44966
89 Ga0495662_0023563 3300046476 Unclassified 2972
90 Ga0495664_0169349 3300046477 Bacteria 1325
91 Ga0495630_0000137 3300046517 Bacteria 57459
92 Ga0495586_0000353 3300046535 Bacteria 28799
93 Ga0495587_0000826 3300046536 Bacteria 20534
94 Ga0495634_0034020 3300046642 Unclassified 3498
95 Ga0495657_0234038 3300046675 Archaea 1110
96 Ga0495613_0117605 3300046689 Unclassified 1911
97 Ga0495674_0012513 3300047319 Bacteria 7992
98 Ga0495676_0014049 3300047321 Bacteria 7172
99 Ga0495675_0004048 3300047444 Bacteria 8887
100 Ga0495602_0000218 3300048088 Bacteria 53233
101 Ga0496112_0048094 3300048915 Bacteria 4183
102 Ga0501031_0012573 3300049568 Bacteria 5529
103 Ga0501032_0001767 3300049569 Bacteria 17060
104 Ga0501033_0016056 3300049570 Bacteria 5670
105 Ga0501034_0105719 3300049571 Bacteria 2807
106 Ga0501036_0054472 3300049572 Bacteria 3388
107 Ga0501037_0065023 3300049573 Bacteria 2657
108 Ga0501038_0007829 3300049574 Bacteria 9850
109 Ga0501043_0092589 3300049579 Bacteria 2376
110 Ga0501043_0220238 3300049579 Bacteria 1468
111 Ga0501046_0136247 3300049580 Bacteria 1859
112 Ga0501046_0216084 3300049580 Bacteria 1421
113 Ga0501047_0302510 3300049581 Bacteria 1441
114 Ga0501048_0059587 3300049582 Bacteria 2705
115 Ga0501070_0055414 3300049586 Bacteria 3286
116 Ga0501198_000075 3300049649 Bacteria 24596
117 Ga0501222_000089 3300049662 Bacteria 24651
118 Ga0501035_0066281 3300049822 Bacteria 3204
119 Ga0501044_0009755 3300049823 Bacteria 10444
120 Ga0501044_0204176 3300049823 Bacteria 1933
121 nmdc:mga05p37_2074_c1 3300050507 Bacteria 23388
122 nmdc:mga05p37_38513_c1 3300050507 Bacteria 5864
123 nmdc:mga05p37_51831_c1 3300050507 Bacteria 5046
124 nmdc:mga09592_53663_c1 3300050508 Bacteria 3404
125 nmdc:mga09592_903_c1 3300050508 Bacteria 23319
126 nmdc:mga0qj67_275807_c1 3300050509 Unclassified 1363
127 nmdc:mga08y16_276244_c1 3300050511 Bacteria 1734
128 nmdc:mga0n895_1205_c1 3300050512 Bacteria 19071
129 nmdc:mga0rr50_15788_c1 3300050513 Bacteria 4995
130 nmdc:mga0rr50_22721_c1 3300050513 Unclassified 4310
131 nmdc:mga08x19_51280_c1 3300050514 Bacteria 2650
132 nmdc:mga0a205_7088_c1 3300050515 Bacteria 10127
133 Ga0500650_0049972 3300053098 Unclassified 1941

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049568 Ga0501031_0012573 Ga0501031_0012573_377_1318 287
2 3300049569 Ga0501032_0001767 Ga0501032_0001767_1125_2066 287
3 3300049570 Ga0501033_0016056 Ga0501033_0016056_164_1105 287
4 3300049572 Ga0501036_0054472 Ga0501036_0054472_1103_2044 287
5 3300049573 Ga0501037_0065023 Ga0501037_0065023_1411_2352 287
6 3300049574 Ga0501038_0007829 Ga0501038_0007829_7100_8041 287
7 3300049579 Ga0501043_0220238 Ga0501043_0220238_84_1025 287
8 3300049580 Ga0501046_0216084 Ga0501046_0216084_86_1027 287
9 3300049581 Ga0501047_0302510 Ga0501047_0302510_92_1033 287
10 3300049822 Ga0501035_0066281 Ga0501035_0066281_454_1395 287
11 3300049823 Ga0501044_0009755 Ga0501044_0009755_3848_4789 287
12 3300049571 Ga0501034_0105719 Ga0501034_0105719_454_1395 293
13 3300049580 Ga0501046_0136247 Ga0501046_0136247_451_1392 293
14 3300049586 Ga0501070_0055414 Ga0501070_0055414_1570_2511 293
15 3300049823 Ga0501044_0204176 Ga0501044_0204176_347_1288 293
16 3300049579 Ga0501043_0092589 Ga0501043_0092589_234_1274 295
17 3300049582 Ga0501048_0059587 Ga0501048_0059587_563_1603 295
18 3300039447 Ga0436361_0917291 Ga0436361_0917291_116_1111 304
19 3300046476 Ga0495662_0023563 Ga0495662_0023563_737_1801 315
20 3300046517 Ga0495630_0000137 Ga0495630_0000137_32022_33086 315
21 3300046535 Ga0495586_0000353 Ga0495586_0000353_26270_27334 315
22 3300046642 Ga0495634_0034020 Ga0495634_0034020_1213_2277 315
23 3300046689 Ga0495613_0117605 Ga0495613_0117605_18_1082 315
24 3300047319 Ga0495674_0012513 Ga0495674_0012513_808_1872 315
25 3300047321 Ga0495676_0014049 Ga0495676_0014049_1224_2288 315
26 3300009147 Ga0114129_10023551 Ga0114129_100235511 317
27 3300031344 Ga0265316_10001922 Ga0265316_1000192218 321
28 3300005468 Ga0070707_100016601 Ga0070707_1000166014 322
29 3300005536 Ga0070697_100018090 Ga0070697_1000180903 322
30 3300013306 Ga0163162_10317121 Ga0163162_103171212 326
31 3300049649 Ga0501198_000075 Ga0501198_000075_6714_7724 326
32 3300049662 Ga0501222_000089 Ga0501222_000089_16928_17938 326
33 3300005458 Ga0070681_10144967 Ga0070681_101449673 332
34 3300006846 Ga0075430_100204018 Ga0075430_1002040182 332
35 3300028800 Ga0265338_10240561 Ga0265338_102405612 332
36 3300050509 nmdc:mga0qj67_275807_c1 nmdc:mga0qj67_275807_c1_86_1084 332
37 3300005355 Ga0070671_100029991 Ga0070671_1000299914 333
38 3300005364 Ga0070673_100299908 Ga0070673_1002999082 333
39 3300005459 Ga0068867_100011712 Ga0068867_1000117124 333
40 3300013296 Ga0157374_10218562 Ga0157374_102185622 333
41 3300013297 Ga0157378_10259403 Ga0157378_102594032 333
42 3300025931 Ga0207644_10378412 Ga0207644_103784121 333
43 3300005367 Ga0070667_100000649 Ga0070667_1000006497 334
44 3300005445 Ga0070708_100066133 Ga0070708_1000661332 334
45 3300005843 Ga0068860_100135527 Ga0068860_1001355272 334
46 3300006844 Ga0075428_100013329 Ga0075428_1000133297 334
47 3300006846 Ga0075430_100043172 Ga0075430_1000431722 334
48 3300006871 Ga0075434_100167099 Ga0075434_1001670992 334
49 3300009094 Ga0111539_10000607 Ga0111539_1000060742 334
50 3300009147 Ga0114129_10034492 Ga0114129_100344925 334
51 3300013308 Ga0157375_10014007 Ga0157375_100140071 334
52 3300025986 Ga0207658_10001155 Ga0207658_100011555 334
53 3300028381 Ga0268264_10100996 Ga0268264_101009962 334
54 3300050507 nmdc:mga05p37_38513_c1 nmdc:mga05p37_38513_c1_2582_3586 334
55 3300050508 nmdc:mga09592_53663_c1 nmdc:mga09592_53663_c1_92_1096 334
56 3300050511 nmdc:mga08y16_276244_c1 nmdc:mga08y16_276244_c1_103_1107 334
57 3300005518 Ga0070699_100143935 Ga0070699_1001439352 335
58 3300031235 Ga0265330_10000393 Ga0265330_100003932 335
59 3300031241 Ga0265325_10006581 Ga0265325_100065816 335
60 3300031249 Ga0265339_10001485 Ga0265339_1000148514 335
61 3300031344 Ga0265316_10002063 Ga0265316_1000206310 335
62 3300031595 Ga0265313_10001858 Ga0265313_1000185817 335
63 3300031712 Ga0265342_10001489 Ga0265342_100014895 335
64 3300042876 Ga0451577_0000869 Ga0451577_0000869_35351_36394 336
65 3300050514 nmdc:mga08x19_51280_c1 nmdc:mga08x19_51280_c1_1101_2126 336
66 3300053098 Ga0500650_0049972 Ga0500650_0049972_620_1633 336
67 3300005467 Ga0070706_100016151 Ga0070706_1000161512 337
68 3300005468 Ga0070707_100043887 Ga0070707_1000438872 337
69 3300005468 Ga0070707_100223181 Ga0070707_1002231812 337
70 3300005536 Ga0070697_100017136 Ga0070697_1000171364 337
71 3300025910 Ga0207684_10037167 Ga0207684_100371672 337
72 3300025922 Ga0207646_10036083 Ga0207646_100360833 337
73 3300005439 Ga0070711_100114494 Ga0070711_1001144941 338
74 3300013296 Ga0157374_10091187 Ga0157374_100911872 338
75 3300025315 Ga0207697_10005745 Ga0207697_100057454 338
76 3300025916 Ga0207663_10162251 Ga0207663_101622512 338
77 3300046477 Ga0495664_0169349 Ga0495664_0169349_203_1219 338
78 3300005615 Ga0070702_100091044 Ga0070702_1000910442 339
79 3300006028 Ga0070717_10063662 Ga0070717_100636622 339
80 3300006358 Ga0068871_100024071 Ga0068871_1000240713 339
81 3300006844 Ga0075428_100131077 Ga0075428_1001310773 339
82 3300006852 Ga0075433_10013734 Ga0075433_100137347 339
83 3300006871 Ga0075434_100006708 Ga0075434_1000067088 339
84 3300006880 Ga0075429_100002975 Ga0075429_1000029753 339
85 3300006881 Ga0068865_100130488 Ga0068865_1001304882 339
86 3300009098 Ga0105245_10044525 Ga0105245_100445252 339
87 3300009147 Ga0114129_10000163 Ga0114129_1000016348 339
88 3300009176 Ga0105242_10010919 Ga0105242_100109195 339
89 3300013297 Ga0157378_10141582 Ga0157378_101415822 339
90 3300025934 Ga0207686_10006324 Ga0207686_100063242 339
91 3300025938 Ga0207704_10092950 Ga0207704_100929502 339
92 3300037418 Ga0395900_0001362 Ga0395900_0001362_4807_5826 339
93 3300037466 Ga0395898_0002310 Ga0395898_0002310_3800_4819 339
94 3300037471 Ga0395905_0004491 Ga0395905_0004491_3823_4842 339
95 3300038443 Ga0395901_0002431 Ga0395901_0002431_6333_7352 339
96 3300050507 nmdc:mga05p37_2074_c1 nmdc:mga05p37_2074_c1_21539_22576 339
97 3300050507 nmdc:mga05p37_51831_c1 nmdc:mga05p37_51831_c1_3588_4607 339
98 3300050508 nmdc:mga09592_903_c1 nmdc:mga09592_903_c1_487_1524 339
99 3300050512 nmdc:mga0n895_1205_c1 nmdc:mga0n895_1205_c1_5412_6431 339
100 3300050513 nmdc:mga0rr50_15788_c1 nmdc:mga0rr50_15788_c1_149_1168 339
101 3300050515 nmdc:mga0a205_7088_c1 nmdc:mga0a205_7088_c1_3835_4854 339
102 3300005355 Ga0070671_100017476 Ga0070671_1000174762 340
103 3300005434 Ga0070709_10153914 Ga0070709_101539141 340
104 3300005435 Ga0070714_100121453 Ga0070714_1001214532 340
105 3300005436 Ga0070713_100144003 Ga0070713_1001440032 340
106 3300005467 Ga0070706_100031201 Ga0070706_1000312014 340
107 3300005471 Ga0070698_100043779 Ga0070698_1000437792 340
108 3300005545 Ga0070695_100174070 Ga0070695_1001740702 340
109 3300006358 Ga0068871_100111394 Ga0068871_1001113942 340
110 3300006914 Ga0075436_100056102 Ga0075436_1000561022 340
111 3300007076 Ga0075435_100008146 Ga0075435_1000081462 340
112 3300009094 Ga0111539_10665643 Ga0111539_106656431 340
113 3300013296 Ga0157374_10037822 Ga0157374_100378222 340
114 3300013306 Ga0163162_10122185 Ga0163162_101221852 340
115 3300013308 Ga0157375_10202824 Ga0157375_102028242 340
116 3300021361 Ga0213872_10044390 Ga0213872_100443902 340
117 3300025910 Ga0207684_10002868 Ga0207684_1000286814 340
118 3300025931 Ga0207644_10375778 Ga0207644_103757781 340
119 3300028653 Ga0265323_10055846 Ga0265323_100558462 340
120 3300028800 Ga0265338_10003517 Ga0265338_100035177 340
121 3300031251 Ga0265327_10000700 Ga0265327_1000070010 340
122 3300035724 Ga0373933_0000500 Ga0373933_0000500_20162_21202 340
123 3300036401 Ga0373937_0000122 Ga0373937_0000122_33477_34517 340
124 3300039447 Ga0436361_0361682 Ga0436361_0361682_625_1713 340
125 3300046536 Ga0495587_0000826 Ga0495587_0000826_211_1251 340
126 3300046675 Ga0495657_0234038 Ga0495657_0234038_33_1073 340
127 3300047444 Ga0495675_0004048 Ga0495675_0004048_5276_6316 340
128 3300048088 Ga0495602_0000218 Ga0495602_0000218_33467_34507 340
129 3300048915 Ga0496112_0048094 Ga0496112_0048094_1041_2105 340
130 3300050513 nmdc:mga0rr50_22721_c1 nmdc:mga0rr50_22721_c1_2026_3063 340
131 3300005347 Ga0070668_100028009 Ga0070668_1000280093 342
132 3300006358 Ga0068871_100128665 Ga0068871_1001286652 342
133 3300027907 Ga0207428_10001007 Ga0207428_100010078 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00535

Glycos_transf_2

Glycosyl transferase family 2

6

167

0.88

PF13641

Glyco_tranf_2_3

Glycosyltransferase like family 2

2

227

0.84

PF10111

Glyco_tranf_2_2

Glycosyltransferase like family 2

6

243

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
6p61-assembly2.cif.gz_B structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8579 5 211
6p61-assembly3.cif.gz_C structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.853 5 211
2z86-assembly1.cif.gz_B crystal structure of chondroitin polymerase from escherichia coli strain k4 (k4cp) complexed with udp-glcua and udp 0.8473 3 241
6p61-assembly2.cif.gz_B structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8452 5 211
6p61-assembly3.cif.gz_C structure of a glycosyltransferase from leptospira borgpetersenii serovar hardjo-bovis (strain jb197) 0.8363 5 211
ID Description Score Start End Superfamily
af_P9WLV9_5_255_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8348 3 236 3.90.550.10
2z86D01 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8346 5 236 3.90.550.10
af_P9WMX9_1_212_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8109 1 214 3.90.550.10
af_P77414_1_259_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8068 1 258 3.90.550.10
1h7lA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8059 5 212 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A2W0BLY7-F1-model_v4 Glycosyl transferase family 2 0.9906 5 254 GO:0016740
AF-A0A2V6CM57-F1-model_v4 Glycosyltransferase 2-like domain-containing protein 0.9905 5 216
AF-A0A2W5Z4D6-F1-model_v4 Glycosyl transferase family 2 0.9792 5 335 GO:0016740
AF-A0A2V5STK5-F1-model_v4 Glycosyltransferase 2-like domain-containing protein 0.9788 4 110
AF-A0A352JDG2-F1-model_v4 Glycosyl transferase family 2 0.9756 5 250 GO:0016740

Feature Viewer

pLDDT pTM Quality
91.64 0.89 High
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Predicted Structure (AlphaFold2)

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