F154201

General Info

Members Datasets Scaffolds Average Seq Length
132 65 264 231

Family's Representative Sequence

Representative Sequence 3300049580|Ga0501046_0008160|Ga0501046_0008160_5199_5930
Length 232
Sequence MTRSKPVRSAAGADASEPRRPVAPVRKRILLVDDHPFMRAGLAQLIERQSDMTVGGEAGDPATALAFLAKSPADLVITDLTMPGRGGIELIKDLQTMHPGLPVLVVSMHDEVIYAERVLRAGARGYVMKEAGGEALLAALRQVLAGQVYVSPQMSSRILEGMTGRKTDREFEVFQLIGQGKSTREIAAQLSLSTKTVDVHRSHIKEKLNLGDVTALVRHAVRWMETQGSAPG

Samples

Sample ID Description Type Environment
1 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
8 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
15 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
18 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
19 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
20 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
24 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
25 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
31 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
32 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
33 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
34 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
35 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
36 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
40 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
41 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
42 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
48 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
49 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
52 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
53 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
54 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
55 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
56 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
59 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
60 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
61 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
62 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
64 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
65 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.76
Rhizosphere 96.21
Stem 0
Stem Tuber 0
Unclassified 12.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501046_0008160 3300049580 Bacteria 9149
2 rootH2_10005291 3300003320 Bacteria 6101
3 rootH2_10005592 3300003320 Bacteria 24008
4 rootL2_10010628 3300003322 Bacteria 6531
5 Ga0065707_10159940 3300005295 Unclassified 1572
6 Ga0070683_100001044 3300005329 Bacteria 20817
7 Ga0070683_100317622 3300005329 Unclassified 1482
8 Ga0070692_10048509 3300005345 Bacteria 2200
9 Ga0070705_100356097 3300005440 Bacteria 1069
10 Ga0070700_100057180 3300005441 Unclassified 2447
11 Ga0070700_100145498 3300005441 Bacteria 1615
12 Ga0070681_10490653 3300005458 Bacteria 1141
13 Ga0070707_100446358 3300005468 Bacteria 1254
14 Ga0070679_100074504 3300005530 Bacteria 3385
15 Ga0068857_100643744 3300005577 Bacteria 1004
16 Ga0068859_100684970 3300005617 Bacteria 1116
17 Ga0068871_100093473 3300006358 Bacteria 2509
18 Ga0097620_100159628 3300006931 Bacteria 2334
19 Ga0097620_100684923 3300006931 Bacteria 1116
20 Ga0105242_10213134 3300009176 Archaea 1722
21 Ga0105248_10235210 3300009177 Bacteria 2062
22 Ga0157369_10273526 3300013105 Unclassified 1760
23 Ga0157374_10000036 3300013296 Bacteria 176499
24 Ga0163162_10344036 3300013306 Bacteria 1624
25 Ga0157375_10000045 3300013308 Bacteria 151387
26 Ga0157375_10343418 3300013308 Bacteria 1658
27 Ga0163163_10000027 3300014325 Bacteria 176970
28 Ga0163163_10241481 3300014325 Unclassified 1856
29 Ga0157380_10506238 3300014326 Bacteria 1174
30 Ga0157376_10000155 3300014969 Bacteria 47176
31 Ga0207652_10128734 3300025921 Bacteria 2256
32 Ga0207686_10197239 3300025934 Unclassified 1439
33 Ga0207703_10009443 3300026035 Bacteria 7661
34 Ga0207702_10018587 3300026078 Bacteria 5750
35 Ga0207674_10667553 3300026116 Bacteria 1004
36 Ga0265337_1002630 3300028556 Bacteria 8097
37 Ga0265326_10034521 3300028558 Unclassified 1439
38 Ga0265319_1000552 3300028563 Bacteria 25357
39 Ga0265319_1001307 3300028563 Bacteria 15068
40 Ga0265319_1002079 3300028563 Bacteria 11228
41 Ga0265319_1003040 3300028563 Bacteria 8891
42 Ga0265319_1008394 3300028563 Bacteria 4532
43 Ga0265319_1013411 3300028563 Bacteria 3260
44 Ga0265334_10000748 3300028573 Bacteria 16275
45 Ga0265318_10000075 3300028577 Bacteria 94310
46 Ga0265318_10000088 3300028577 Bacteria 82498
47 Ga0265318_10000370 3300028577 Bacteria 35331
48 Ga0265318_10014210 3300028577 Bacteria 3347
49 Ga0265318_10017076 3300028577 Unclassified 2985
50 Ga0265318_10043288 3300028577 Unclassified 1706
51 Ga0265323_10024156 3300028653 Bacteria 2314
52 Ga0265336_10000834 3300028666 Bacteria 16059
53 Ga0265336_10042627 3300028666 Bacteria 1385
54 Ga0265338_10002276 3300028800 Bacteria 29246
55 Ga0265338_10006213 3300028800 Bacteria 15298
56 Ga0265338_10012843 3300028800 Bacteria 9518
57 Ga0265338_10016931 3300028800 Bacteria 7888
58 Ga0265338_10117209 3300028800 Unclassified 2131
59 Ga0265324_10007448 3300029957 Bacteria 4430
60 Ga0265324_10097060 3300029957 Unclassified 1002
61 Ga0265332_10041484 3300031238 Bacteria 1991
62 Ga0265320_10000046 3300031240 Bacteria 119672
63 Ga0265320_10001391 3300031240 Bacteria 17599
64 Ga0265320_10004896 3300031240 Bacteria 8689
65 Ga0265320_10006056 3300031240 Bacteria 7674
66 Ga0265320_10007279 3300031240 Bacteria 6887
67 Ga0265320_10011276 3300031240 Bacteria 5266
68 Ga0265320_10028631 3300031240 Bacteria 2890
69 Ga0265320_10078828 3300031240 Unclassified 1540
70 Ga0265325_10044613 3300031241 Bacteria 2309
71 Ga0265325_10114822 3300031241 Bacteria 1304
72 Ga0265340_10001429 3300031247 Bacteria 13697
73 Ga0265339_10006300 3300031249 Bacteria 7800
74 Ga0265331_10006106 3300031250 Bacteria 7168
75 Ga0265331_10035688 3300031250 Bacteria 2445
76 Ga0265327_10000029 3300031251 Bacteria 352607
77 Ga0265327_10000958 3300031251 Bacteria 41429
78 Ga0265327_10016215 3300031251 Bacteria 4750
79 Ga0265327_10035859 3300031251 Bacteria 2736
80 Ga0265316_10000616 3300031344 Bacteria 39606
81 Ga0265316_10030390 3300031344 Bacteria 4429
82 Ga0265316_10059450 3300031344 Bacteria 2972
83 Ga0265316_10392485 3300031344 Bacteria 1000
84 Ga0265313_10000394 3300031595 Bacteria 46881
85 Ga0265313_10001741 3300031595 Bacteria 20007
86 Ga0265313_10010473 3300031595 Bacteria 5857
87 Ga0265313_10086501 3300031595 Bacteria 1414
88 Ga0265313_10104197 3300031595 Bacteria 1255
89 Ga0265313_10126223 3300031595 Bacteria 1112
90 Ga0307508_10000035 3300031616 Bacteria 154788
91 Ga0265314_10002762 3300031711 Bacteria 17532
92 Ga0265314_10002792 3300031711 Bacteria 17427
93 Ga0265314_10004045 3300031711 Bacteria 13851
94 Ga0265314_10011101 3300031711 Bacteria 7464
95 Ga0265314_10080043 3300031711 Bacteria 2158
96 Ga0265314_10085565 3300031711 Bacteria 2066
97 Ga0265342_10006460 3300031712 Bacteria 8728
98 Ga0265342_10040811 3300031712 Bacteria 2813
99 Ga0265342_10107707 3300031712 Bacteria 1580
100 Ga0265342_10210094 3300031712 Bacteria 1053
101 Ga0265342_10250345 3300031712 Bacteria 946
102 Ga0373942_0090388 3300035207 Bacteria 922
103 Ga0373937_0782509 3300036401 Bacteria 902
104 Ga0395898_0000051 3300037466 Bacteria 281872
105 Ga0451807_0301419 3300041486 Bacteria 2138
106 Ga0451577_0000025 3300042876 Bacteria 403632
107 Ga0451577_0128961 3300042876 Bacteria 2268
108 Ga0451577_0925879 3300042876 Bacteria 784
109 Ga0453683_0005472 3300044673 Bacteria 8861
110 Ga0453684_0009408 3300044712 Bacteria 17101
111 Ga0453684_0028120 3300044712 Bacteria 8038
112 Ga0453684_0030622 3300044712 Bacteria 7596
113 Ga0453684_0071370 3300044712 Unclassified 4391
114 Ga0453684_0398150 3300044712 Bacteria 1543
115 Ga0453684_0520740 3300044712 Unclassified 1314
116 Ga0466959_0030712 3300045049 Bacteria 3978
117 Ga0451576_0000618 3300045051 Bacteria 74433
118 Ga0451576_0001092 3300045051 Bacteria 49505
119 Ga0451576_0015965 3300045051 Bacteria 8300
120 Ga0451576_0088464 3300045051 Bacteria 3222
121 Ga0451576_0347218 3300045051 Unclassified 1554
122 Ga0451576_0413380 3300045051 Bacteria 1415
123 Ga0451576_0802755 3300045051 Bacteria 988
124 Ga0495594_0334713 3300046499 Unclassified 862
125 Ga0495636_0099540 3300047318 Bacteria 1270
126 Ga0501046_0000114 3300049580 Bacteria 84468
127 Ga0501047_0133718 3300049581 Bacteria 2360
128 Ga0501243_000063 3300049675 Bacteria 10484
129 Ga0501083_0011898 3300049744 Bacteria 6096
130 Ga0501083_0098194 3300049744 Unclassified 1932
131 Ga0501044_0004220 3300049823 Bacteria 16143
132 Ga0501044_0174911 3300049823 Bacteria 2116
133 Ga0501046_0008160
134 rootH2_10005291
135 rootH2_10005592
136 rootL2_10010628
137 Ga0065707_10159940
138 Ga0070683_100001044
139 Ga0070683_100317622
140 Ga0070692_10048509
141 Ga0070705_100356097
142 Ga0070700_100057180
143 Ga0070700_100145498
144 Ga0070681_10490653
145 Ga0070707_100446358
146 Ga0070679_100074504
147 Ga0068857_100643744
148 Ga0068859_100684970
149 Ga0068871_100093473
150 Ga0097620_100159628
151 Ga0097620_100684923
152 Ga0105242_10213134
153 Ga0105248_10235210
154 Ga0157369_10273526
155 Ga0157374_10000036
156 Ga0163162_10344036
157 Ga0157375_10000045
158 Ga0157375_10343418
159 Ga0163163_10000027
160 Ga0163163_10241481
161 Ga0157380_10506238
162 Ga0157376_10000155
163 Ga0207652_10128734
164 Ga0207686_10197239
165 Ga0207703_10009443
166 Ga0207702_10018587
167 Ga0207674_10667553
168 Ga0265337_1002630
169 Ga0265326_10034521
170 Ga0265319_1000552
171 Ga0265319_1001307
172 Ga0265319_1002079
173 Ga0265319_1003040
174 Ga0265319_1008394
175 Ga0265319_1013411
176 Ga0265334_10000748
177 Ga0265318_10000075
178 Ga0265318_10000088
179 Ga0265318_10000370
180 Ga0265318_10014210
181 Ga0265318_10017076
182 Ga0265318_10043288
183 Ga0265323_10024156
184 Ga0265336_10000834
185 Ga0265336_10042627
186 Ga0265338_10002276
187 Ga0265338_10006213
188 Ga0265338_10012843
189 Ga0265338_10016931
190 Ga0265338_10117209
191 Ga0265324_10007448
192 Ga0265324_10097060
193 Ga0265332_10041484
194 Ga0265320_10000046
195 Ga0265320_10001391
196 Ga0265320_10004896
197 Ga0265320_10006056
198 Ga0265320_10007279
199 Ga0265320_10011276
200 Ga0265320_10028631
201 Ga0265320_10078828
202 Ga0265325_10044613
203 Ga0265325_10114822
204 Ga0265340_10001429
205 Ga0265339_10006300
206 Ga0265331_10006106
207 Ga0265331_10035688
208 Ga0265327_10000029
209 Ga0265327_10000958
210 Ga0265327_10016215
211 Ga0265327_10035859
212 Ga0265316_10000616
213 Ga0265316_10030390
214 Ga0265316_10059450
215 Ga0265316_10392485
216 Ga0265313_10000394
217 Ga0265313_10001741
218 Ga0265313_10010473
219 Ga0265313_10086501
220 Ga0265313_10104197
221 Ga0265313_10126223
222 Ga0307508_10000035
223 Ga0265314_10002762
224 Ga0265314_10002792
225 Ga0265314_10004045
226 Ga0265314_10011101
227 Ga0265314_10080043
228 Ga0265314_10085565
229 Ga0265342_10006460
230 Ga0265342_10040811
231 Ga0265342_10107707
232 Ga0265342_10210094
233 Ga0265342_10250345
234 Ga0373942_0090388
235 Ga0373937_0782509
236 Ga0395898_0000051
237 Ga0451807_0301419
238 Ga0451577_0000025
239 Ga0451577_0128961
240 Ga0451577_0925879
241 Ga0453683_0005472
242 Ga0453684_0009408
243 Ga0453684_0028120
244 Ga0453684_0030622
245 Ga0453684_0071370
246 Ga0453684_0398150
247 Ga0453684_0520740
248 Ga0466959_0030712
249 Ga0451576_0000618
250 Ga0451576_0001092
251 Ga0451576_0015965
252 Ga0451576_0088464
253 Ga0451576_0347218
254 Ga0451576_0413380
255 Ga0451576_0802755
256 Ga0495594_0334713
257 Ga0495636_0099540
258 Ga0501046_0000114
259 Ga0501047_0133718
260 Ga0501243_000063
261 Ga0501083_0011898
262 Ga0501083_0098194
263 Ga0501044_0004220
264 Ga0501044_0174911

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

167

220

0.98

PF00072

Response_reg

Response regulator receiver domain

29

141

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3p7n-assembly2.cif.gz_B crystal structure of light activated transcription factor el222 from erythrobacter litoralis 0.951 169 228
6ide-assembly1.cif.gz_B crystal structure of the vibrio cholera vqma-ligand-dna complex provides molecular mechanisms for drug design 0.9388 173 228
6kju-assembly1.cif.gz_B huge conformation shift of vibrio cholerae vqma dimer in the absence of target dna provides insight into dna-binding mechanisms of luxr-type receptors 0.9366 173 228
3qp5-assembly2.cif.gz_D crystal structure of cvir bound to antagonist chlorolactone (cl) 0.9365 173 224
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.9338 23 139
ID Description Score Start End Superfamily
3kloB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9548 169 229 1.10.10.10
3p7nB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.951 169 228 1.10.10.10
3kloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9501 169 229 1.10.10.10
3kloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9497 169 229 1.10.10.10
3klnC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9472 170 229 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7W0GWP8-F1-model_v4 Response regulator transcription factor 0.9447 23 141 GO:0000160
AF-A0A2M7A5F5-F1-model_v4 Two-component system response regulator 0.943 49 140 GO:0000160
AF-A0A1H0NM22-F1-model_v4 Two component transcriptional regulator, winged helix family 0.932 25 141 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A1K1S9B4-F1-model_v4 Response regulator receiver domain-containing protein 0.9307 27 140 GO:0000160
GO:0003677
AF-A0A1M4ND27-F1-model_v4 Stage 0 sporulation protein A homolog 0.9303 24 141 GO:0000160

Map