F149931

General Info

Members Datasets Scaffolds Average Seq Length
131 95 131 467

Family's Representative Sequence

Representative Sequence 3300037068|Ga0373925_0000183|Ga0373925_0000183_2127_3707
Length 526
Sequence LTQFVTALTVDPRSILQSPAGRALPRDVFMAHRLLPRQDDVRGGASVKETIVIVDDDEGVRQILATVLEGSGYAATGVASGEKALQAVREAPIDLVILDLVLPRVDGLEVLREIHTLRPETAVIMITGHASVETAIKAMKMGAADYIVKPFRMEEVEMVVARALERSRLRRENAALRRELQISFGLQNLVGQSPDMRRLQQVIEQVASSRSTVLVSGPPGSGKELAARALHQAGDRRGQPFVPVSCGGIPEPLLEDELFGHVRGAFPDASADRPGRVQAAEGGTLFLDEVSALTPHLQARLLRLVQEREAQPLGASAAVPVDVRVVASTVHDLKTLVAEGRFREDLFYRLSVIHLAIPALRDRREDIPVLVTHFLGRFGREMNVPPRRFTPSALRVLCDAAWPGNVRQLENVVERTVALSFGRDELDRDDLPRDLFDDTAVEAPLLHVGGDGFSLDEVLANYEQRMLYQALEHSGWVKTRAAEMLKIKRTTLIEKMKRLGIPLKGHQEGDTASSEPVAVGAAIARR

Samples

Sample ID Description Type Environment
1 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
9 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
10 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
28 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
29 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
43 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
44 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
47 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
48 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
49 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
50 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
51 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
52 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
53 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
54 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
55 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
56 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
59 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
60 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
61 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
62 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
63 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
64 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
65 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
66 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
67 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
68 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
69 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
70 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
71 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
72 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
73 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
74 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
75 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
76 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
77 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
89 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
90 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
94 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
95 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 93.13
Stem 0
Stem Tuber 0
Unclassified 6.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25407J50210_10013958 3300003373 Bacteria 2068
2 Ga0070658_10003215 3300005327 Bacteria 13485
3 Ga0070660_100230169 3300005339 Bacteria 1508
4 Ga0070692_10000315 3300005345 Bacteria 13846
5 Ga0070714_100054315 3300005435 Bacteria 3422
6 Ga0070694_100019638 3300005444 Bacteria 4300
7 Ga0070706_100152808 3300005467 Bacteria 2155
8 Ga0070697_100001884 3300005536 Bacteria 16033
9 Ga0070695_100004991 3300005545 Bacteria 7824
10 Ga0070696_100010189 3300005546 Bacteria 6291
11 Ga0070665_100000789 3300005548 Bacteria 41665
12 Ga0070665_100145977 3300005548 Bacteria 2369
13 Ga0070704_100000553 3300005549 Bacteria 17945
14 Ga0068855_100056148 3300005563 Bacteria 4621
15 Ga0068857_100013011 3300005577 Bacteria 7249
16 Ga0068856_100070782 3300005614 Bacteria 3451
17 Ga0068859_100200745 3300005617 Bacteria 2079
18 Ga0081539_10015584 3300005985 Bacteria 5513
19 Ga0075428_100017828 3300006844 Bacteria 7846
20 Ga0075431_100012084 3300006847 Bacteria 8714
21 Ga0075431_100099615 3300006847 Bacteria 2999
22 Ga0075431_100224263 3300006847 Bacteria 1917
23 Ga0075433_10032433 3300006852 Bacteria 4474
24 Ga0075434_100029141 3300006871 Bacteria 5429
25 Ga0075434_100098572 3300006871 Bacteria 2928
26 Ga0075429_100020139 3300006880 Bacteria 5785
27 Ga0075429_100109128 3300006880 Bacteria 2419
28 Ga0097620_100200733 3300006931 Bacteria 2079
29 Ga0111539_10008162 3300009094 Bacteria 13339
30 Ga0111539_10013338 3300009094 Bacteria 10268
31 Ga0114129_10024958 3300009147 Bacteria 8474
32 Ga0114129_10062758 3300009147 Bacteria 5189
33 Ga0157372_10198542 3300013307 Bacteria 2323
34 Ga0157372_10395033 3300013307 Bacteria 1612
35 Ga0213876_10000053 3300021384 Bacteria 142404
36 Ga0213876_10000728 3300021384 Bacteria 22855
37 Ga0213876_10025134 3300021384 Bacteria 3144
38 Ga0213871_10015604 3300021441 Bacteria 1819
39 Ga0207705_10018468 3300025909 Bacteria 4987
40 Ga0207684_10130732 3300025910 Bacteria 2155
41 Ga0207695_10000104 3300025913 Bacteria 257201
42 Ga0207663_10010644 3300025916 Bacteria 4906
43 Ga0207646_10177958 3300025922 Bacteria 1921
44 Ga0207700_10070855 3300025928 Bacteria 2682
45 Ga0207644_10073715 3300025931 Bacteria 2504
46 Ga0207691_10054737 3300025940 Bacteria 3639
47 Ga0207679_10052890 3300025945 Bacteria 2980
48 Ga0207676_10067506 3300026095 Bacteria 2857
49 Ga0207674_10174263 3300026116 Bacteria 2103
50 Ga0207428_10012200 3300027907 Bacteria 7559
51 Ga0268266_10008128 3300028379 Bacteria 9370
52 Ga0268266_10078450 3300028379 Bacteria 2873
53 Ga0265339_10006274 3300031249 Bacteria 7818
54 Ga0265339_10007405 3300031249 Bacteria 7097
55 Ga0307508_10029346 3300031616 Bacteria 4973
56 Ga0265314_10001263 3300031711 Bacteria 28834
57 Ga0307409_100100927 3300031995 Bacteria 2393
58 Ga0307416_100024866 3300032002 Bacteria 4380
59 Ga0373929_0000036 3300035085 Bacteria 37547
60 Ga0373937_0281661 3300036401 Bacteria 1570
61 Ga0373925_0000183 3300037068 Bacteria 68921
62 Ga0395905_0001730 3300037471 Bacteria 25561
63 Ga0436365_0007911 3300039437 Bacteria 5051
64 Ga0436365_0873465 3300039437 Bacteria 246686
65 Ga0436365_0924676 3300039437 Bacteria 448697
66 Ga0436365_1493333 3300039437 Bacteria 2159
67 Ga0436365_1496084 3300039437 Bacteria 6817
68 Ga0436360_0871492 3300039438 Bacteria 7520
69 Ga0436361_0066194 3300039447 Bacteria 8023
70 Ga0436362_0490960 3300039453 Bacteria 7429
71 Ga0451577_0001781 3300042876 Bacteria 27667
72 Ga0451577_0041935 3300042876 Bacteria 4106
73 Ga0453683_0007765 3300044673 Bacteria 7252
74 Ga0453684_0029151 3300044712 Bacteria 7850
75 Ga0453684_0044823 3300044712 Bacteria 5911
76 Ga0453684_0086151 3300044712 Bacteria 3899
77 Ga0451576_0012845 3300045051 Bacteria 9393
78 Ga0495629_0000005 3300046459 Bacteria 404868
79 Ga0495639_0000259 3300046475 Bacteria 26251
80 Ga0495594_0082149 3300046499 Bacteria 1800
81 Ga0495630_0052190 3300046517 Bacteria 3061
82 Ga0495630_0052338 3300046517 Bacteria 3057
83 Ga0495632_0016793 3300046519 Bacteria 4059
84 Ga0495632_0025077 3300046519 Bacteria 3158
85 Ga0495666_0000085 3300046526 Bacteria 37533
86 Ga0495652_0198882 3300046529 Bacteria 1523
87 Ga0495586_0000605 3300046535 Bacteria 20790
88 Ga0495635_0007059 3300046663 Bacteria 7850
89 Ga0495647_0007526 3300046681 Bacteria 3654
90 Ga0495658_0005836 3300046683 Bacteria 6045
91 Ga0495613_0056582 3300046689 Bacteria 2880
92 Ga0495624_0012525 3300046690 Bacteria 5793
93 Ga0495649_0058868 3300046694 Bacteria 2069
94 Ga0495600_0014092 3300046809 Bacteria 5036
95 Ga0495674_0006438 3300047319 Bacteria 11257
96 Ga0495676_0007756 3300047321 Bacteria 9845
97 Ga0495680_0005084 3300047322 Bacteria 12413
98 Ga0495684_0015347 3300047471 Bacteria 5896
99 Ga0495684_0028296 3300047471 Bacteria 4303
100 Ga0495684_0032221 3300047471 Bacteria 4023
101 Ga0501034_0012549 3300049571 Bacteria 8747
102 Ga0501034_0040218 3300049571 Bacteria 4734
103 Ga0501040_0010552 3300049576 Bacteria 6041
104 Ga0501043_0000351 3300049579 Bacteria 41929
105 Ga0501046_0000020 3300049580 Bacteria 218268
106 Ga0501047_0002985 3300049581 Bacteria 16045
107 Ga0501048_0001429 3300049582 Bacteria 18094
108 Ga0501080_0019479 3300049742 Bacteria 6284
109 Ga0501080_0083871 3300049742 Bacteria 2961
110 Ga0501083_0000005 3300049744 Bacteria 206200
111 Ga0501083_0211110 3300049744 Bacteria 1265
112 Ga0501035_0035815 3300049822 Bacteria 4502
113 Ga0501044_0000139 3300049823 Bacteria 88706
114 Ga0501044_0027311 3300049823 Bacteria 6034
115 Ga0501044_0053981 3300049823 Bacteria 4132
116 Ga0501044_0057264 3300049823 Bacteria 4000
117 nmdc:mga05p37_23706_c1 3300050507 Bacteria 7451
118 nmdc:mga05p37_48617_c1 3300050507 Bacteria 5216
119 nmdc:mga09592_7253_c1 3300050508 Bacteria 9009
120 nmdc:mga06r32_100257_c1 3300050510 Bacteria 2841
121 nmdc:mga06r32_138755_c1 3300050510 Bacteria 2406
122 nmdc:mga06r32_22199_c1 3300050510 Bacteria 5864
123 nmdc:mga08y16_17464_c1 3300050511 Bacteria 7556
124 nmdc:mga08y16_30252_c1 3300050511 Bacteria 5700
125 nmdc:mga0n895_203196_c1 3300050512 Bacteria 2012
126 nmdc:mga0n895_23345_c1 3300050512 Bacteria 5812
127 nmdc:mga0n895_245136_c1 3300050512 Bacteria 1819
128 nmdc:mga0a205_57118_c1 3300050515 Bacteria 3768
129 Ga0495619_0047908 3300053085 Bacteria 2816
130 Ga0501082_0028970 3300060353 Bacteria 4770
131 Ga0501082_0106053 3300060353 Bacteria 2431

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049744 Ga0501083_0211110 Ga0501083_0211110_39_1226 388
2 3300036401 Ga0373937_0281661 Ga0373937_0281661_25_1215 389
3 3300005546 Ga0070696_100010189 Ga0070696_1000101895 409
4 3300050515 nmdc:mga0a205_57118_c1 nmdc:mga0a205_57118_c1_1301_2557 417
5 3300006844 Ga0075428_100017828 Ga0075428_1000178282 421
6 3300049742 Ga0501080_0019479 Ga0501080_0019479_4199_5524 428
7 3300005985 Ga0081539_10015584 Ga0081539_100155844 430
8 3300031616 Ga0307508_10029346 Ga0307508_100293463 432
9 3300006852 Ga0075433_10032433 Ga0075433_100324333 433
10 3300006871 Ga0075434_100029141 Ga0075434_1000291412 433
11 3300050512 nmdc:mga0n895_245136_c1 nmdc:mga0n895_245136_c1_182_1486 433
12 3300006871 Ga0075434_100098572 Ga0075434_1000985721 434
13 3300035085 Ga0373929_0000036 Ga0373929_0000036_23603_24910 434
14 3300050512 nmdc:mga0n895_203196_c1 nmdc:mga0n895_203196_c1_479_1786 434
15 3300026116 Ga0207674_10174263 Ga0207674_101742631 438
16 3300005467 Ga0070706_100152808 Ga0070706_1001528082 439
17 3300005617 Ga0068859_100200745 Ga0068859_1002007451 439
18 3300006931 Ga0097620_100200733 Ga0097620_1002007333 439
19 3300025910 Ga0207684_10130732 Ga0207684_101307322 439
20 3300046517 Ga0495630_0052190 Ga0495630_0052190_1233_2609 440
21 3300046690 Ga0495624_0012525 Ga0495624_0012525_3961_5337 440
22 3300047319 Ga0495674_0006438 Ga0495674_0006438_8798_10174 440
23 3300047471 Ga0495684_0028296 Ga0495684_0028296_2145_3521 440
24 3300039437 Ga0436365_0007911 Ga0436365_0007911_565_1977 442
25 3300049823 Ga0501044_0053981 Ga0501044_0053981_995_2437 442
26 3300060353 Ga0501082_0106053 Ga0501082_0106053_895_2307 442
27 3300026095 Ga0207676_10067506 Ga0207676_100675062 443
28 3300050510 nmdc:mga06r32_100257_c1 nmdc:mga06r32_100257_c1_1113_2486 443
29 3300005548 Ga0070665_100145977 Ga0070665_1001459772 444
30 3300021384 Ga0213876_10000053 Ga0213876_1000005384 444
31 3300021384 Ga0213876_10025134 Ga0213876_100251341 444
32 3300039437 Ga0436365_0924676 Ga0436365_0924676_18461_19882 444
33 3300039437 Ga0436365_1493333 Ga0436365_1493333_156_1571 444
34 3300039437 Ga0436365_1496084 Ga0436365_1496084_3383_4879 444
35 3300046519 Ga0495632_0016793 Ga0495632_0016793_2601_4010 444
36 3300049571 Ga0501034_0012549 Ga0501034_0012549_743_2113 444
37 3300049823 Ga0501044_0027311 Ga0501044_0027311_95_1465 444
38 3300005327 Ga0070658_10003215 Ga0070658_100032158 445
39 3300005339 Ga0070660_100230169 Ga0070660_1002301691 445
40 3300005548 Ga0070665_100000789 Ga0070665_10000078935 445
41 3300005563 Ga0068855_100056148 Ga0068855_1000561481 445
42 3300005577 Ga0068857_100013011 Ga0068857_1000130114 445
43 3300009094 Ga0111539_10008162 Ga0111539_100081625 445
44 3300013307 Ga0157372_10198542 Ga0157372_101985421 445
45 3300021384 Ga0213876_10000728 Ga0213876_1000072812 445
46 3300025909 Ga0207705_10018468 Ga0207705_100184685 445
47 3300025928 Ga0207700_10070855 Ga0207700_100708552 445
48 3300025931 Ga0207644_10073715 Ga0207644_100737153 445
49 3300025940 Ga0207691_10054737 Ga0207691_100547372 445
50 3300025945 Ga0207679_10052890 Ga0207679_100528902 445
51 3300027907 Ga0207428_10012200 Ga0207428_100122002 445
52 3300028379 Ga0268266_10008128 Ga0268266_100081282 445
53 3300039437 Ga0436365_0873465 Ga0436365_0873465_2385_3806 445
54 3300046529 Ga0495652_0198882 Ga0495652_0198882_34_1407 445
55 3300046694 Ga0495649_0058868 Ga0495649_0058868_22_1407 445
56 3300049571 Ga0501034_0040218 Ga0501034_0040218_1090_2466 445
57 3300049823 Ga0501044_0000139 Ga0501044_0000139_49172_50548 445
58 3300050511 nmdc:mga08y16_17464_c1 nmdc:mga08y16_17464_c1_506_1936 445
59 3300060353 Ga0501082_0028970 Ga0501082_0028970_954_2330 445
60 3300005435 Ga0070714_100054315 Ga0070714_1000543154 446
61 3300005614 Ga0068856_100070782 Ga0068856_1000707824 446
62 3300013307 Ga0157372_10395033 Ga0157372_103950332 446
63 3300025913 Ga0207695_10000104 Ga0207695_1000010439 446
64 3300031249 Ga0265339_10006274 Ga0265339_100062745 446
65 3300031249 Ga0265339_10007405 Ga0265339_100074053 446
66 3300031711 Ga0265314_10001263 Ga0265314_1000126312 446
67 3300046519 Ga0495632_0025077 Ga0495632_0025077_653_2053 446
68 3300047471 Ga0495684_0032221 Ga0495684_0032221_729_2105 446
69 3300021441 Ga0213871_10015604 Ga0213871_100156042 447
70 3300028379 Ga0268266_10078450 Ga0268266_100784501 447
71 3300039438 Ga0436360_0871492 Ga0436360_0871492_389_1798 447
72 3300039447 Ga0436361_0066194 Ga0436361_0066194_5179_6588 447
73 3300039453 Ga0436362_0490960 Ga0436362_0490960_4993_6402 447
74 3300050512 nmdc:mga0n895_23345_c1 nmdc:mga0n895_23345_c1_315_1697 447
75 3300031995 Ga0307409_100100927 Ga0307409_1001009271 448
76 3300049579 Ga0501043_0000351 Ga0501043_0000351_4104_5588 448
77 3300049580 Ga0501046_0000020 Ga0501046_0000020_58268_59752 448
78 3300049581 Ga0501047_0002985 Ga0501047_0002985_566_2050 448
79 3300049582 Ga0501048_0001429 Ga0501048_0001429_10211_11695 448
80 3300049742 Ga0501080_0083871 Ga0501080_0083871_823_2307 448
81 3300049744 Ga0501083_0000005 Ga0501083_0000005_164158_165642 448
82 3300049822 Ga0501035_0035815 Ga0501035_0035815_1080_2564 448
83 3300049823 Ga0501044_0057264 Ga0501044_0057264_565_2049 448
84 3300006880 Ga0075429_100020139 Ga0075429_1000201393 449
85 3300032002 Ga0307416_100024866 Ga0307416_1000248665 449
86 3300037471 Ga0395905_0001730 Ga0395905_0001730_8093_9538 449
87 3300050508 nmdc:mga09592_7253_c1 nmdc:mga09592_7253_c1_6757_8211 449
88 3300006880 Ga0075429_100109128 Ga0075429_1001091282 450
89 3300042876 Ga0451577_0001781 Ga0451577_0001781_14651_16036 450
90 3300044712 Ga0453684_0044823 Ga0453684_0044823_2948_4333 450
91 3300049576 Ga0501040_0010552 Ga0501040_0010552_1569_2987 450
92 3300009147 Ga0114129_10062758 Ga0114129_100627583 451
93 3300050507 nmdc:mga05p37_48617_c1 nmdc:mga05p37_48617_c1_353_1759 451
94 3300044673 Ga0453683_0007765 Ga0453683_0007765_1499_2893 453
95 3300044712 Ga0453684_0029151 Ga0453684_0029151_3872_5284 454
96 3300045051 Ga0451576_0012845 Ga0451576_0012845_5223_6635 454
97 3300042876 Ga0451577_0041935 Ga0451577_0041935_1159_2580 455
98 3300044712 Ga0453684_0086151 Ga0453684_0086151_64_1485 455
99 3300005345 Ga0070692_10000315 Ga0070692_1000031510 456
100 3300005444 Ga0070694_100019638 Ga0070694_1000196381 456
101 3300005536 Ga0070697_100001884 Ga0070697_1000018842 456
102 3300005545 Ga0070695_100004991 Ga0070695_1000049915 456
103 3300005549 Ga0070704_100000553 Ga0070704_10000055312 456
104 3300006847 Ga0075431_100012084 Ga0075431_1000120844 456
105 3300006847 Ga0075431_100099615 Ga0075431_1000996152 456
106 3300009094 Ga0111539_10013338 Ga0111539_100133382 456
107 3300009147 Ga0114129_10024958 Ga0114129_100249584 456
108 3300025922 Ga0207646_10177958 Ga0207646_101779582 456
109 3300046459 Ga0495629_0000005 Ga0495629_0000005_210443_211885 456
110 3300046499 Ga0495594_0082149 Ga0495594_0082149_34_1476 456
111 3300046517 Ga0495630_0052338 Ga0495630_0052338_105_1544 456
112 3300046663 Ga0495635_0007059 Ga0495635_0007059_5376_6815 456
113 3300046689 Ga0495613_0056582 Ga0495613_0056582_595_2034 456
114 3300046809 Ga0495600_0014092 Ga0495600_0014092_2046_3485 456
115 3300047322 Ga0495680_0005084 Ga0495680_0005084_6243_7682 456
116 3300047471 Ga0495684_0015347 Ga0495684_0015347_1879_3318 456
117 3300050510 nmdc:mga06r32_138755_c1 nmdc:mga06r32_138755_c1_565_2010 456
118 3300050511 nmdc:mga08y16_30252_c1 nmdc:mga08y16_30252_c1_4077_5516 456
119 3300053085 Ga0495619_0047908 Ga0495619_0047908_101_1540 456
120 3300025916 Ga0207663_10010644 Ga0207663_100106444 457
121 3300037068 Ga0373925_0000183 Ga0373925_0000183_2127_3707 457
122 3300046475 Ga0495639_0000259 Ga0495639_0000259_7834_9414 457
123 3300046526 Ga0495666_0000085 Ga0495666_0000085_27967_29547 457
124 3300046535 Ga0495586_0000605 Ga0495586_0000605_6455_8035 457
125 3300046681 Ga0495647_0007526 Ga0495647_0007526_388_1968 457
126 3300046683 Ga0495658_0005836 Ga0495658_0005836_2967_4547 457
127 3300047321 Ga0495676_0007756 Ga0495676_0007756_7887_9467 457
128 3300050507 nmdc:mga05p37_23706_c1 nmdc:mga05p37_23706_c1_5323_6822 457
129 3300050510 nmdc:mga06r32_22199_c1 nmdc:mga06r32_22199_c1_2754_4253 457
130 3300003373 JGI25407J50210_10013958 JGI25407J50210_100139582 458
131 3300006847 Ga0075431_100224263 Ga0075431_1002242632 458

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

189

356

0.99

PF00072

Response_reg

Response regulator receiver domain

51

161

0.97

PF02954

HTH_8

Bacterial regulatory protein, Fis family

458

499

0.94

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

190

360

0.88

PF07728

AAA_5

AAA domain (dynein-related subfamily)

212

339

0.82

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

213

350

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bs1-assembly1.cif.gz_A-1 mub is an aaaplus atpase that forms helical filaments to control target selection for dna transposition 0.9863 317 384
5ep2-assembly1.cif.gz_A quorum-sensing signal integrator luxo - catalytic domain in complex with azau inhibitor 0.9675 143 383
1ojl-assembly2.cif.gz_F-3 crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding 0.9656 143 383
1ojl-assembly1.cif.gz_C crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding 0.9654 143 383
7m0s-assembly1.cif.gz_B n-terminal domain of pmra from acinetobacter baumannii 0.9646 3 119
ID Description Score Start End Superfamily
af_Q06065_316_382_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 1.003 314 379 1.10.8.60
1ny5B03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9923 317 384 1.10.8.60
1ojlA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9878 314 380 1.10.8.60
af_P0AFU4_307_384_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9872 314 384 1.10.8.60
1ojlE02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9852 314 383 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A061P088-F1-model_v4 C4-dicarboxylate transport transcriptional regulatory protein 0.9842 138 383 GO:0003677
GO:0005524
GO:0006355
GO:0016887
AF-A0A1F3B419-F1-model_v4 Response regulatory domain-containing protein 0.9788 2 117 GO:0000160
AF-A0A4Q5PGR0-F1-model_v4 Response regulator 0.9778 1 118 GO:0000160
AF-A0A661J0E0-F1-model_v4 UDP-3-O-acyl-N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase) (EC 3.5.1.108) (UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase) 0.9768 1 118 GO:0000160
GO:0009245
GO:0016020
GO:0046872
GO:0103117
AF-A0A662CUW6-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.976 3 123 GO:0000160

Feature Viewer

pLDDT pTM Quality
87.72 0.62 Medium
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Predicted Structure (AlphaFold2)

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