F149807

General Info

Members Datasets Scaffolds Average Seq Length
131 96 262 194

Family's Representative Sequence

Representative Sequence 3300031995|Ga0307409_100118947|Ga0307409_1001189471
Length 227
Sequence MVRGPGKGPALTLRSFIPRMTRANPLRVRPGKDLMPRTITHPALGPLKEAFGADTKLLAGEFRDMITVVVPRERILPVCTFLRDDAKLRYDFLCDVHATDYLHYPGARHRFGVTYALTSLPNNNRLWLKVFLDPDQDTAPGTGFRDEDALEKSDPGLRLDSVTGIWPGAEWMEREIYDMFGIVFLGHPDLRRILTWNGYGSYPLRKDYPLRGVGERENYKIVTREGA

Samples

Sample ID Description Type Environment
1 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
66 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
75 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
76 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
77 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
78 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
79 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
80 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
81 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
84 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
92 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
95 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
96 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 6.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307409_100118947 3300031995 Bacteria 2233
2 Ga0070690_100057647 3300005330 Bacteria 2493
3 Ga0068868_101001783 3300005338 Bacteria 764
4 Ga0070660_100293629 3300005339 Bacteria 1331
5 Ga0070689_100639976 3300005340 Bacteria 924
6 Ga0070661_100393629 3300005344 Bacteria 1094
7 Ga0070675_100045783 3300005354 Bacteria 3581
8 Ga0070671_100112598 3300005355 Bacteria 2286
9 Ga0070674_100015990 3300005356 Bacteria 4697
10 Ga0070667_100189222 3300005367 Unclassified 1823
11 Ga0070711_101114975 3300005439 Bacteria 680
12 Ga0070663_101197285 3300005455 Bacteria 667
13 Ga0070678_100142867 3300005456 Bacteria 1917
14 Ga0070662_100201785 3300005457 Bacteria 1578
15 Ga0068867_100300904 3300005459 Bacteria 1322
16 Ga0070706_100168080 3300005467 Bacteria 2048
17 Ga0070684_100415844 3300005535 Bacteria 1241
18 Ga0070672_100265340 3300005543 Bacteria 1449
19 Ga0068857_100007832 3300005577 Bacteria 9211
20 Ga0068856_100896310 3300005614 Bacteria 906
21 Ga0068852_100504704 3300005616 Bacteria 1205
22 Ga0068852_100783069 3300005616 Bacteria 967
23 Ga0068864_100224282 3300005618 Bacteria 1735
24 Ga0068864_100287563 3300005618 Bacteria 1536
25 Ga0068863_100174518 3300005841 Bacteria 2062
26 Ga0068862_100485402 3300005844 Bacteria 1170
27 Ga0081539_10004907 3300005985 Bacteria 14257
28 Ga0097621_100467617 3300006237 Unclassified 1138
29 Ga0075430_100083875 3300006846 Bacteria 2669
30 Ga0075431_100013861 3300006847 Bacteria 8142
31 Ga0105245_10084060 3300009098 Bacteria 2914
32 Ga0105247_10216526 3300009101 Bacteria 1294
33 Ga0105247_10554623 3300009101 Bacteria 845
34 Ga0105241_10042751 3300009174 Bacteria 3430
35 Ga0105241_10329200 3300009174 Bacteria 1320
36 Ga0105248_10265900 3300009177 Bacteria 1930
37 Ga0105248_10654119 3300009177 Bacteria 1186
38 Ga0105239_10122922 3300010375 Bacteria 2884
39 Ga0105239_10335776 3300010375 Bacteria 1705
40 Ga0105239_11891306 3300010375 Unclassified 692
41 Ga0157373_10097080 3300013100 Bacteria 2074
42 Ga0157371_10432566 3300013102 Bacteria 966
43 Ga0157371_10893996 3300013102 Bacteria 673
44 Ga0157370_10045854 3300013104 Bacteria 4193
45 Ga0157369_10071412 3300013105 Bacteria 3727
46 Ga0157369_10207968 3300013105 Unclassified 2052
47 Ga0157369_10545561 3300013105 Bacteria 1198
48 Ga0157369_11133097 3300013105 Bacteria 799
49 Ga0157374_10686654 3300013296 Bacteria 1036
50 Ga0157372_10020458 3300013307 Bacteria 7140
51 Ga0157372_10082331 3300013307 Bacteria 3643
52 Ga0157372_10301679 3300013307 Bacteria 1863
53 Ga0157372_10566183 3300013307 Bacteria 1324
54 Ga0157372_10582933 3300013307 Bacteria 1304
55 Ga0157375_11429682 3300013308 Bacteria 815
56 Ga0207645_10168604 3300025907 Bacteria 1434
57 Ga0207705_10023841 3300025909 Bacteria 4366
58 Ga0207654_10129115 3300025911 Bacteria 1598
59 Ga0207654_10353089 3300025911 Bacteria 1013
60 Ga0207695_10933738 3300025913 Bacteria 747
61 Ga0207657_10386663 3300025919 Bacteria 1101
62 Ga0207649_10268815 3300025920 Bacteria 1235
63 Ga0207652_11183982 3300025921 Unclassified 666
64 Ga0207650_10135195 3300025925 Bacteria 1933
65 Ga0207659_10090651 3300025926 Bacteria 2282
66 Ga0207659_10236167 3300025926 Bacteria 1477
67 Ga0207659_10731669 3300025926 Bacteria 848
68 Ga0207644_10318486 3300025931 Bacteria 1257
69 Ga0207690_10298473 3300025932 Bacteria 1260
70 Ga0207669_10056497 3300025937 Bacteria 2384
71 Ga0207691_10239534 3300025940 Bacteria 1569
72 Ga0207691_10259548 3300025940 Bacteria 1498
73 Ga0207691_10399172 3300025940 Bacteria 1173
74 Ga0207711_10688709 3300025941 Bacteria 953
75 Ga0207661_10730389 3300025944 Bacteria 911
76 Ga0207667_10563854 3300025949 Bacteria 1151
77 Ga0207651_10316023 3300025960 Bacteria 1304
78 Ga0207658_10663622 3300025986 Bacteria 941
79 Ga0207641_10373568 3300026088 Bacteria 1364
80 Ga0207641_11450234 3300026088 Bacteria 688
81 Ga0207674_10001103 3300026116 Bacteria 35082
82 Ga0207698_10501651 3300026142 Bacteria 1181
83 Ga0207698_10733720 3300026142 Bacteria 985
84 Ga0268265_10264968 3300028380 Unclassified 1530
85 Ga0268265_10492004 3300028380 Unclassified 1154
86 Ga0307408_100712517 3300031548 Bacteria 903
87 Ga0307405_10777596 3300031731 Bacteria 800
88 Ga0307410_10748846 3300031852 Bacteria 827
89 Ga0307406_10094844 3300031901 Bacteria 2018
90 Ga0307409_100254976 3300031995 Bacteria 1606
91 Ga0307409_100840322 3300031995 Bacteria 928
92 Ga0307409_101045642 3300031995 Bacteria 836
93 Ga0307416_101257992 3300032002 Bacteria 846
94 Ga0307414_10736895 3300032004 Bacteria 895
95 Ga0307415_101075824 3300032126 Unclassified 752
96 Ga0373937_0016516 3300036401 Bacteria 6558
97 Ga0373937_0069759 3300036401 Bacteria 3241
98 Ga0395900_0782959 3300037418 Bacteria 883
99 Ga0395905_0469578 3300037471 Bacteria 1157
100 Ga0395905_0636024 3300037471 Bacteria 969
101 Ga0395905_1046519 3300037471 Bacteria 719
102 Ga0395901_0028583 3300038443 Bacteria 5735
103 Ga0495592_0532921 3300046454 Unclassified 724
104 Ga0495580_0402406 3300046472 Bacteria 923
105 Ga0495608_0159065 3300046511 Bacteria 1437
106 Ga0495618_0097763 3300046514 Bacteria 1878
107 Ga0495667_0189664 3300046559 Bacteria 1318
108 Ga0495635_0111804 3300046663 Bacteria 1866
109 Ga0495635_0603149 3300046663 Bacteria 717
110 Ga0495659_0222330 3300046664 Bacteria 780
111 Ga0495613_0026606 3300046689 Bacteria 4309
112 Ga0495604_0255619 3300047317 Bacteria 1193
113 Ga0495684_0007779 3300047471 Bacteria 8298
114 Ga0495684_0403094 3300047471 Bacteria 960
115 Ga0501032_0502857 3300049569 Bacteria 775
116 Ga0501034_0004428 3300049571 Bacteria 15634
117 Ga0501034_0081456 3300049571 Bacteria 3239
118 Ga0501037_0111649 3300049573 Bacteria 1969
119 Ga0501040_0165414 3300049576 Bacteria 1565
120 Ga0501046_0352241 3300049580 Bacteria 1069
121 Ga0501047_0010108 3300049581 Bacteria 8920
122 Ga0501070_0393065 3300049586 Bacteria 1122
123 Ga0501070_0693900 3300049586 Bacteria 805
124 Ga0501080_0033374 3300049742 Bacteria 4803
125 Ga0501083_0167537 3300049744 Bacteria 1436
126 Ga0501044_0000119 3300049823 Bacteria 95213
127 Ga0501044_0006328 3300049823 Bacteria 13093
128 nmdc:mga09592_449131_c1 3300050508 Bacteria 1112
129 nmdc:mga0qj67_220967_c1 3300050509 Bacteria 1538
130 nmdc:mga0qj67_93028_c1 3300050509 Bacteria 2424
131 nmdc:mga06r32_1091281_c1 3300050510 Bacteria 747
132 Ga0307409_100118947
133 Ga0070690_100057647
134 Ga0068868_101001783
135 Ga0070660_100293629
136 Ga0070689_100639976
137 Ga0070661_100393629
138 Ga0070675_100045783
139 Ga0070671_100112598
140 Ga0070674_100015990
141 Ga0070667_100189222
142 Ga0070711_101114975
143 Ga0070663_101197285
144 Ga0070678_100142867
145 Ga0070662_100201785
146 Ga0068867_100300904
147 Ga0070706_100168080
148 Ga0070684_100415844
149 Ga0070672_100265340
150 Ga0068857_100007832
151 Ga0068856_100896310
152 Ga0068852_100504704
153 Ga0068852_100783069
154 Ga0068864_100224282
155 Ga0068864_100287563
156 Ga0068863_100174518
157 Ga0068862_100485402
158 Ga0081539_10004907
159 Ga0097621_100467617
160 Ga0075430_100083875
161 Ga0075431_100013861
162 Ga0105245_10084060
163 Ga0105247_10216526
164 Ga0105247_10554623
165 Ga0105241_10042751
166 Ga0105241_10329200
167 Ga0105248_10265900
168 Ga0105248_10654119
169 Ga0105239_10122922
170 Ga0105239_10335776
171 Ga0105239_11891306
172 Ga0157373_10097080
173 Ga0157371_10432566
174 Ga0157371_10893996
175 Ga0157370_10045854
176 Ga0157369_10071412
177 Ga0157369_10207968
178 Ga0157369_10545561
179 Ga0157369_11133097
180 Ga0157374_10686654
181 Ga0157372_10020458
182 Ga0157372_10082331
183 Ga0157372_10301679
184 Ga0157372_10566183
185 Ga0157372_10582933
186 Ga0157375_11429682
187 Ga0207645_10168604
188 Ga0207705_10023841
189 Ga0207654_10129115
190 Ga0207654_10353089
191 Ga0207695_10933738
192 Ga0207657_10386663
193 Ga0207649_10268815
194 Ga0207652_11183982
195 Ga0207650_10135195
196 Ga0207659_10090651
197 Ga0207659_10236167
198 Ga0207659_10731669
199 Ga0207644_10318486
200 Ga0207690_10298473
201 Ga0207669_10056497
202 Ga0207691_10239534
203 Ga0207691_10259548
204 Ga0207691_10399172
205 Ga0207711_10688709
206 Ga0207661_10730389
207 Ga0207667_10563854
208 Ga0207651_10316023
209 Ga0207658_10663622
210 Ga0207641_10373568
211 Ga0207641_11450234
212 Ga0207674_10001103
213 Ga0207698_10501651
214 Ga0207698_10733720
215 Ga0268265_10264968
216 Ga0268265_10492004
217 Ga0307408_100712517
218 Ga0307405_10777596
219 Ga0307410_10748846
220 Ga0307406_10094844
221 Ga0307409_100254976
222 Ga0307409_100840322
223 Ga0307409_101045642
224 Ga0307416_101257992
225 Ga0307414_10736895
226 Ga0307415_101075824
227 Ga0373937_0016516
228 Ga0373937_0069759
229 Ga0395900_0782959
230 Ga0395905_0469578
231 Ga0395905_0636024
232 Ga0395905_1046519
233 Ga0395901_0028583
234 Ga0495592_0532921
235 Ga0495580_0402406
236 Ga0495608_0159065
237 Ga0495618_0097763
238 Ga0495667_0189664
239 Ga0495635_0111804
240 Ga0495635_0603149
241 Ga0495659_0222330
242 Ga0495613_0026606
243 Ga0495604_0255619
244 Ga0495684_0007779
245 Ga0495684_0403094
246 Ga0501032_0502857
247 Ga0501034_0004428
248 Ga0501034_0081456
249 Ga0501037_0111649
250 Ga0501040_0165414
251 Ga0501046_0352241
252 Ga0501047_0010108
253 Ga0501070_0393065
254 Ga0501070_0693900
255 Ga0501080_0033374
256 Ga0501083_0167537
257 Ga0501044_0000119
258 Ga0501044_0006328
259 nmdc:mga09592_449131_c1
260 nmdc:mga0qj67_220967_c1
261 nmdc:mga0qj67_93028_c1
262 nmdc:mga06r32_1091281_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00329

Complex1_30kDa

Respiratory-chain NADH dehydrogenase, 30 Kd subunit

147

213

0.92

PF00329

Complex1_30kDa

Respiratory-chain NADH dehydrogenase, 30 Kd subunit

68

142

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7p62-assembly1.cif.gz_C complex i from e. coli, ddm-purified, apo, resting state 0.8245 8 180
6rfq-assembly1.cif.gz_G cryo-em structure of a respiratory complex i assembly intermediate with ndufaf2 0.8223 7 180
7z7t-assembly1.cif.gz_C complex i from e. coli, lmng-purified, under turnover at ph 6, open state 0.8195 8 180
7zci-assembly1.cif.gz_C complex i from e. coli, lmng-purified, under turnover at ph 6, resting state 0.8144 8 180
7zc5-assembly1.cif.gz_C complex i from e. coli, ddm/lmng-purified, under turnover at ph 8, resting state 0.8136 8 180
ID Description Score Start End Superfamily
af_P22237_2_142_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.9148 9 160 3.30.460.80
af_A0A2P2CLF6_6_131_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.9036 11 160 3.30.460.80
af_A0A2P2CLF6_6_131_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.8833 11 160 3.30.460.80
af_P33599_5_153_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.8608 1 160 3.30.460.80
af_P16431_2_134_3.30.460.80 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;NADH:ubiquinone oxidoreductase Nqo5 subunit 0.8603 9 160 3.30.460.80
ID Description Score Start End GO Terms
AF-A0A7Z9MIZ2-F1-model_v4 NADH:ubiquinone oxidoreductase 30kDa subunit domain-containing protein 0.9462 1 104 GO:0008137
AF-A0A3L7N7J7-F1-model_v4 NADH-quinone oxidoreductase (EC 7.1.1.-) 0.9393 4 164 GO:0008137
GO:0048038
AF-A0A2N5JLM1-F1-model_v4 NADH-quinone oxidoreductase subunit C 0.9332 9 163 GO:0008137
AF-A0A7V5ZG64-F1-model_v4 NADH-quinone oxidoreductase subunit C 0.9316 4 95 GO:0008137
AF-A0A7C3DKD2-F1-model_v4 NADH-quinone oxidoreductase subunit C 0.9282 10 95 GO:0008137

Map