F144609
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 130 | 117 | 260 | 811 |
Family's Representative Sequence
| Representative Sequence | 3300005455|Ga0070663_100002518|Ga0070663_1000025183 |
| Length | 856 |
| Sequence | MPNFARQAVPSGGQLGDALLTFGTNQLWRTPCCEPATASENRARSNDLRSRATVMPNTRAPKDLDVADWQTALRRQFGREQSFGLENLGTDPVFSDFRVHNPSSGTRYRVAIRGSSVGQNSCTCPDYATNDLGTCKHIEFTLAKLTSRRGGKAALAKGFQPEYSEVWLDYAGSRHVRFRAGTGCPPALLRQAKQIFNQSAGWALPWDRLDRLDALVSMARDTGHELRCYDDVWQFVAQIRDGERRQAALVEAYPKGVNDKALAKLLKVKLYPYQAEGALFAARAGRSLIGDEMGLGKTIQAIAAAELFARHFGVRRVLVVCPTSLKHQWKNELTRFIDRDSQVIHGLRSQRQLQYREDVFCKITHYETLARDADLIDAWAPELVIADEAQRIKNWNTVAARALKRIVSPYAVVLTGTPLENRLEELISIVQFVDRHRLGPTWRLLDEHQLRDEAGRVIGYRALDRIGQTLSPIMLRRRKSDVLTQLPERVDNRIFVPLTPEQRVHHDENGAIVTRIVSRWRKTGYLSDADQRRLQCALQNMRMACNSTYLLDRETDHGHKVDELMTLLEEVLESPTAKAVVFSQWLGTHELIVRRLASRAWGHVLFSGSVPGEKRGALVDQFHNDPNCRLFLSTDAGGVGLNLQHAAAMVVNMDMPWNPAVLEQRIGRVHRMGQSRGVQVVNFVGQGSIEEGMLSVLAFKKSLFAGVLDGGAQEVFLQGTRLSKFMESVEQVAGAMGEADEDTAEYFDSPAAADPSQGRTSPHPAADIASSANADMATEPLDKQPSTPAASSDPWATLLAAGALMLQGLATARAAGAEPAIAIERDPVTGQASLRLPLPEPAVLKRLAKAFEPWLN |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 2 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 3 | 3300002772 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS | Metagenome | Endosphere |
| 4 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 5 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 6 | 3300003760 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 | Metagenome | Endosphere |
| 7 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 8 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 9 | 3300003763 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 | Metagenome | Endosphere |
| 10 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 12 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 14 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 15 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 16 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 17 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 18 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 20 | 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Metagenome | Rhizosphere |
| 21 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300025228 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 29 | 3300025231 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 30 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 31 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 32 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 33 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 34 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 35 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300027296 | Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) | Metagenome | Nodule |
| 45 | 3300027357 | Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) | Metagenome | Nodule |
| 46 | 3300027361 | Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) | Metagenome | Nodule |
| 47 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 49 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 50 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 51 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 52 | 3300031649 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM | Metagenome | Unclassified |
| 53 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 54 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 55 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 56 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 57 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 58 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 59 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 60 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 61 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 62 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 63 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 64 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 65 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 66 | 3300041458 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG | Metagenome | Rhizoplane |
| 67 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 68 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300046476 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046642 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 86 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 87 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 88 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 89 | 3300049460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 91 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 92 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 93 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 94 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 95 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 96 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 99 | 3300053111 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere | Metagenome | Endosphere |
| 100 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 101 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 102 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 103 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 104 | 3300053178 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere | Metagenome | Endosphere |
| 105 | 2512047030 | Paraburkholderia tuberum STM678 | Isolate | Nodule |
| 106 | 2513237094 | Bradyrhizobium sp. WSM3983 | Isolate | Nodule |
| 107 | 2513237104 | Bradyrhizobium sp. EC3.3 | Isolate | Nodule |
| 108 | 2529292951 | Rhizobium sp. CCGE 510 | Isolate | Nodule |
| 109 | 2582581299 | Rhizobium leguminosarum OV483 | Isolate | Rhizosphere |
| 110 | 2791355199 | |||
| 111 | 2791355263 | Rhizobium chutanense C5 | Isolate | Nodule |
| 112 | 2876761206 | Bradyrhizobium centrolobii BR 10245 | Isolate | Nodule |
| 113 | 2885383462 | Bradyrhizobium sp. Leo170 | Isolate | Unclassified |
| 114 | 2906626472 | Bradyrhizobium hipponense aSej3 | Isolate | Unclassified |
| 115 | 2906643746 | Bradyrhizobium genosp. SA-3 Rp7b | Isolate | Unclassified |
| 116 | 2977864932 | Mesorhizobium tamadayense DSM 28320 | Isolate | Nodule |
| 117 | 2996893221 | Rhizobium sp. R635 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.7 |
| Metatranscriptomes | 0 |
| Isolates | 9.3 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 17.69 |
| Nodule | 8.46 |
| Rhizoplane | 0.77 |
| Rhizosphere | 54.62 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 1.54 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070663_100002518 | 3300005455 | Bacteria | 10341 |
| 2 | JGI25162J39368_1000993 | 3300002737 | Bacteria | 17917 |
| 3 | JGI25164J39214_1000061 | 3300002772 | Bacteria | 110617 |
| 4 | JGI25165J46597_1000151 | 3300003214 | Bacteria | 114835 |
| 5 | rootH1_10181779 | 3300003323 | Bacteria | 3034 |
| 6 | Ga0055527_1000849 | 3300003760 | Bacteria | 8023 |
| 7 | Ga0055535_1002156 | 3300003761 | Bacteria | 7634 |
| 8 | Ga0055542_1001011 | 3300003762 | Bacteria | 17923 |
| 9 | Ga0055529_1000140 | 3300003763 | Bacteria | 102393 |
| 10 | Ga0070683_100000264 | 3300005329 | Bacteria | 36130 |
| 11 | Ga0070681_10091877 | 3300005458 | Bacteria | 2985 |
| 12 | Ga0070706_100076265 | 3300005467 | Bacteria | 3103 |
| 13 | Ga0068853_100035098 | 3300005539 | Bacteria | 4259 |
| 14 | Ga0068855_100087526 | 3300005563 | Bacteria | 3600 |
| 15 | Ga0068856_100000020 | 3300005614 | Bacteria | 146775 |
| 16 | Ga0068860_100001207 | 3300005843 | Bacteria | 28190 |
| 17 | Ga0081540_1001776 | 3300005983 | Bacteria | 18093 |
| 18 | Ga0070717_10026865 | 3300006028 | Bacteria | 4597 |
| 19 | Ga0070712_100026964 | 3300006175 | Bacteria | 3832 |
| 20 | Ga0099794_10002555 | 3300007265 | Bacteria | 6742 |
| 21 | Ga0105240_10034475 | 3300009093 | Bacteria | 6528 |
| 22 | Ga0105240_10063993 | 3300009093 | Bacteria | 4572 |
| 23 | Ga0105240_10088653 | 3300009093 | Bacteria | 3785 |
| 24 | Ga0105243_10007242 | 3300009148 | Bacteria | 8526 |
| 25 | Ga0105237_10005880 | 3300009545 | Bacteria | 13755 |
| 26 | Ga0105237_10024160 | 3300009545 | Bacteria | 6218 |
| 27 | Ga0105238_10010462 | 3300009551 | Bacteria | 9311 |
| 28 | Ga0157370_10007470 | 3300013104 | Bacteria | 11878 |
| 29 | Ga0157370_10036416 | 3300013104 | Bacteria | 4774 |
| 30 | Ga0157369_10012558 | 3300013105 | Bacteria | 9609 |
| 31 | Ga0157372_10074744 | 3300013307 | Unclassified | 3822 |
| 32 | Ga0209672_100107 | 3300025228 | Bacteria | 99267 |
| 33 | Ga0207427_100021 | 3300025231 | Bacteria | 494115 |
| 34 | Ga0209437_100150 | 3300025233 | Bacteria | 157430 |
| 35 | Ga0209258_100299 | 3300025242 | Bacteria | 80970 |
| 36 | Ga0209148_1000205 | 3300025254 | Bacteria | 104659 |
| 37 | Ga0209233_1000023 | 3300025261 | Bacteria | 738870 |
| 38 | Ga0209455_1000081 | 3300025272 | Bacteria | 263674 |
| 39 | Ga0207707_10018653 | 3300025912 | Bacteria | 6049 |
| 40 | Ga0207695_10000254 | 3300025913 | Bacteria | 137177 |
| 41 | Ga0207695_10019455 | 3300025913 | Bacteria | 7821 |
| 42 | Ga0207671_10017873 | 3300025914 | Bacteria | 5455 |
| 43 | Ga0207652_10038216 | 3300025921 | Bacteria | 4067 |
| 44 | Ga0207694_10003197 | 3300025924 | Bacteria | 13068 |
| 45 | Ga0207709_10006747 | 3300025935 | Bacteria | 6427 |
| 46 | Ga0207661_10001645 | 3300025944 | Bacteria | 15227 |
| 47 | Ga0207667_10069177 | 3300025949 | Bacteria | 3675 |
| 48 | Ga0207678_10006585 | 3300026067 | Bacteria | 10301 |
| 49 | Ga0209389_1008760 | 3300027296 | Bacteria | 9018 |
| 50 | Ga0209589_1015632 | 3300027357 | Bacteria | 9025 |
| 51 | Ga0209489_111351 | 3300027361 | Bacteria | 9152 |
| 52 | Ga0268264_10000149 | 3300028381 | Bacteria | 163972 |
| 53 | Ga0307515_10001984 | 3300028794 | Bacteria | 45309 |
| 54 | Ga0307515_10003934 | 3300028794 | Bacteria | 31018 |
| 55 | Ga0307515_10061157 | 3300028794 | Bacteria | 5351 |
| 56 | Ga0307515_10076562 | 3300028794 | Bacteria | 4435 |
| 57 | Ga0307513_10010478 | 3300031456 | Bacteria | 11616 |
| 58 | Ga0307513_10036683 | 3300031456 | Bacteria | 5464 |
| 59 | Ga0307509_10049688 | 3300031507 | Bacteria | 4494 |
| 60 | Ga0307509_10071731 | 3300031507 | Bacteria | 3611 |
| 61 | Ga0307508_10000404 | 3300031616 | Bacteria | 51734 |
| 62 | Ga0307514_10013240 | 3300031649 | Bacteria | 6845 |
| 63 | Ga0307516_10020144 | 3300031730 | Bacteria | 6897 |
| 64 | Ga0307507_10037551 | 3300033179 | Bacteria | 4929 |
| 65 | Ga0307510_10023353 | 3300033180 | Bacteria | 7170 |
| 66 | Ga0316574_0008930 | 3300035398 | Bacteria | 5594 |
| 67 | Ga0373927_0025007 | 3300035695 | Bacteria | 3904 |
| 68 | Ga0395899_0000145 | 3300037312 | Bacteria | 107297 |
| 69 | Ga0395900_0001701 | 3300037418 | Bacteria | 25525 |
| 70 | Ga0395898_0007735 | 3300037466 | Bacteria | 11412 |
| 71 | Ga0395905_0003326 | 3300037471 | Bacteria | 17260 |
| 72 | Ga0436364_1200222 | 3300037853 | Bacteria | 3032 |
| 73 | Ga0395901_0037385 | 3300038443 | Bacteria | 5021 |
| 74 | Ga0436361_0584346 | 3300039447 | Bacteria | 4005 |
| 75 | Ga0436363_1321818 | 3300039450 | Bacteria | 3266 |
| 76 | Ga0451798_0162529 | 3300041458 | Bacteria | 3147 |
| 77 | Ga0466961_0002208 | 3300044693 | Bacteria | 12121 |
| 78 | Ga0495603_0029191 | 3300046455 | Bacteria | 3326 |
| 79 | Ga0495629_0014042 | 3300046459 | Bacteria | 5772 |
| 80 | Ga0495638_0005521 | 3300046460 | Bacteria | 9392 |
| 81 | Ga0495651_0044052 | 3300046462 | Bacteria | 3459 |
| 82 | Ga0495580_0003318 | 3300046472 | Bacteria | 13767 |
| 83 | Ga0495662_0017338 | 3300046476 | Bacteria | 3485 |
| 84 | Ga0495583_0002527 | 3300046506 | Bacteria | 15485 |
| 85 | Ga0495583_0012082 | 3300046506 | Bacteria | 4916 |
| 86 | Ga0495643_0012366 | 3300046522 | Bacteria | 5151 |
| 87 | Ga0495586_0007155 | 3300046535 | Bacteria | 5948 |
| 88 | Ga0495587_0021753 | 3300046536 | Bacteria | 3957 |
| 89 | Ga0495634_0017784 | 3300046642 | Bacteria | 5069 |
| 90 | Ga0495599_0007848 | 3300046678 | Bacteria | 6477 |
| 91 | Ga0495623_0005807 | 3300046679 | Bacteria | 8051 |
| 92 | Ga0495604_0004068 | 3300047317 | Bacteria | 11623 |
| 93 | Ga0495604_0007796 | 3300047317 | Bacteria | 8479 |
| 94 | Ga0495672_0002718 | 3300047320 | Bacteria | 15879 |
| 95 | Ga0495687_022498 | 3300047443 | Bacteria | 3025 |
| 96 | Ga0495602_0008989 | 3300048088 | Bacteria | 10412 |
| 97 | Ga0496117_0000684 | 3300048920 | Bacteria | 54139 |
| 98 | Ga0496118_0002526 | 3300048921 | Bacteria | 24537 |
| 99 | Ga0496124_0008839 | 3300048927 | Bacteria | 10458 |
| 100 | Ga0496126_0003454 | 3300048929 | Bacteria | 19935 |
| 101 | Ga0495682_0002223 | 3300049460 | Bacteria | 9376 |
| 102 | Ga0501034_0001981 | 3300049571 | Bacteria | 25925 |
| 103 | Ga0501043_0033454 | 3300049579 | Bacteria | 4045 |
| 104 | Ga0501047_0069592 | 3300049581 | Bacteria | 3389 |
| 105 | Ga0501083_0042186 | 3300049744 | Bacteria | 3094 |
| 106 | Ga0501044_0093056 | 3300049823 | Unclassified | 3040 |
| 107 | nmdc:mga0k408_1688_c1 | 3300050493 | Bacteria | 11923 |
| 108 | Ga0495601_0003278 | 3300053077 | Bacteria | 9259 |
| 109 | Ga0495619_0002463 | 3300053085 | Bacteria | 12102 |
| 110 | Ga0500651_0008440 | 3300053093 | Bacteria | 6063 |
| 111 | Ga0500572_000194 | 3300053111 | Bacteria | 21418 |
| 112 | Ga0500559_0000979 | 3300053136 | Bacteria | 17809 |
| 113 | Ga0500568_0000019 | 3300053139 | Bacteria | 195696 |
| 114 | Ga0500568_0001929 | 3300053139 | Bacteria | 12712 |
| 115 | Ga0500573_0020748 | 3300053140 | Bacteria | 3762 |
| 116 | Ga0500616_0001345 | 3300053153 | Bacteria | 24012 |
| 117 | Ga0500637_0022457 | 3300053178 | Bacteria | 3439 |
| 118 | 2512345714 | 2512047030 | Bacteria | 9031815 |
| 119 | 2513644448 | 2513237094 | Bacteria | 8789602 |
| 120 | 2513717102 | 2513237104 | Bacteria | 10034502 |
| 121 | 2530648253 | 2529292951 | Bacteria | 6916614 |
| 122 | 2585233858 | 2582581299 | Bacteria | 6518058 |
| 123 | 2793082262 | |||
| 124 | 2793341137 | 2791355263 | Bacteria | 6872478 |
| 125 | 2876768506 | 2876761206 | Bacteria | 10111113 |
| 126 | 2885389267 | 2885383462 | Bacteria | 9473874 |
| 127 | 2906633974 | 2906626472 | Bacteria | 8826946 |
| 128 | 2906650641 | 2906643746 | Bacteria | 8722424 |
| 129 | 2977866052 | 2977864932 | Bacteria | 7534097 |
| 130 | 2996897700 | 2996893221 | Bacteria | 5823108 |
| 131 | Ga0070663_100002518 | |||
| 132 | JGI25162J39368_1000993 | |||
| 133 | JGI25164J39214_1000061 | |||
| 134 | JGI25165J46597_1000151 | |||
| 135 | rootH1_10181779 | |||
| 136 | Ga0055527_1000849 | |||
| 137 | Ga0055535_1002156 | |||
| 138 | Ga0055542_1001011 | |||
| 139 | Ga0055529_1000140 | |||
| 140 | Ga0070683_100000264 | |||
| 141 | Ga0070681_10091877 | |||
| 142 | Ga0070706_100076265 | |||
| 143 | Ga0068853_100035098 | |||
| 144 | Ga0068855_100087526 | |||
| 145 | Ga0068856_100000020 | |||
| 146 | Ga0068860_100001207 | |||
| 147 | Ga0081540_1001776 | |||
| 148 | Ga0070717_10026865 | |||
| 149 | Ga0070712_100026964 | |||
| 150 | Ga0099794_10002555 | |||
| 151 | Ga0105240_10034475 | |||
| 152 | Ga0105240_10063993 | |||
| 153 | Ga0105240_10088653 | |||
| 154 | Ga0105243_10007242 | |||
| 155 | Ga0105237_10005880 | |||
| 156 | Ga0105237_10024160 | |||
| 157 | Ga0105238_10010462 | |||
| 158 | Ga0157370_10007470 | |||
| 159 | Ga0157370_10036416 | |||
| 160 | Ga0157369_10012558 | |||
| 161 | Ga0157372_10074744 | |||
| 162 | Ga0209672_100107 | |||
| 163 | Ga0207427_100021 | |||
| 164 | Ga0209437_100150 | |||
| 165 | Ga0209258_100299 | |||
| 166 | Ga0209148_1000205 | |||
| 167 | Ga0209233_1000023 | |||
| 168 | Ga0209455_1000081 | |||
| 169 | Ga0207707_10018653 | |||
| 170 | Ga0207695_10000254 | |||
| 171 | Ga0207695_10019455 | |||
| 172 | Ga0207671_10017873 | |||
| 173 | Ga0207652_10038216 | |||
| 174 | Ga0207694_10003197 | |||
| 175 | Ga0207709_10006747 | |||
| 176 | Ga0207661_10001645 | |||
| 177 | Ga0207667_10069177 | |||
| 178 | Ga0207678_10006585 | |||
| 179 | Ga0209389_1008760 | |||
| 180 | Ga0209589_1015632 | |||
| 181 | Ga0209489_111351 | |||
| 182 | Ga0268264_10000149 | |||
| 183 | Ga0307515_10001984 | |||
| 184 | Ga0307515_10003934 | |||
| 185 | Ga0307515_10061157 | |||
| 186 | Ga0307515_10076562 | |||
| 187 | Ga0307513_10010478 | |||
| 188 | Ga0307513_10036683 | |||
| 189 | Ga0307509_10049688 | |||
| 190 | Ga0307509_10071731 | |||
| 191 | Ga0307508_10000404 | |||
| 192 | Ga0307514_10013240 | |||
| 193 | Ga0307516_10020144 | |||
| 194 | Ga0307507_10037551 | |||
| 195 | Ga0307510_10023353 | |||
| 196 | Ga0316574_0008930 | |||
| 197 | Ga0373927_0025007 | |||
| 198 | Ga0395899_0000145 | |||
| 199 | Ga0395900_0001701 | |||
| 200 | Ga0395898_0007735 | |||
| 201 | Ga0395905_0003326 | |||
| 202 | Ga0436364_1200222 | |||
| 203 | Ga0395901_0037385 | |||
| 204 | Ga0436361_0584346 | |||
| 205 | Ga0436363_1321818 | |||
| 206 | Ga0451798_0162529 | |||
| 207 | Ga0466961_0002208 | |||
| 208 | Ga0495603_0029191 | |||
| 209 | Ga0495629_0014042 | |||
| 210 | Ga0495638_0005521 | |||
| 211 | Ga0495651_0044052 | |||
| 212 | Ga0495580_0003318 | |||
| 213 | Ga0495662_0017338 | |||
| 214 | Ga0495583_0002527 | |||
| 215 | Ga0495583_0012082 | |||
| 216 | Ga0495643_0012366 | |||
| 217 | Ga0495586_0007155 | |||
| 218 | Ga0495587_0021753 | |||
| 219 | Ga0495634_0017784 | |||
| 220 | Ga0495599_0007848 | |||
| 221 | Ga0495623_0005807 | |||
| 222 | Ga0495604_0004068 | |||
| 223 | Ga0495604_0007796 | |||
| 224 | Ga0495672_0002718 | |||
| 225 | Ga0495687_022498 | |||
| 226 | Ga0495602_0008989 | |||
| 227 | Ga0496117_0000684 | |||
| 228 | Ga0496118_0002526 | |||
| 229 | Ga0496124_0008839 | |||
| 230 | Ga0496126_0003454 | |||
| 231 | Ga0495682_0002223 | |||
| 232 | Ga0501034_0001981 | |||
| 233 | Ga0501043_0033454 | |||
| 234 | Ga0501047_0069592 | |||
| 235 | Ga0501083_0042186 | |||
| 236 | Ga0501044_0093056 | |||
| 237 | nmdc:mga0k408_1688_c1 | |||
| 238 | Ga0495601_0003278 | |||
| 239 | Ga0495619_0002463 | |||
| 240 | Ga0500651_0008440 | |||
| 241 | Ga0500572_000194 | |||
| 242 | Ga0500559_0000979 | |||
| 243 | Ga0500568_0000019 | |||
| 244 | Ga0500568_0001929 | |||
| 245 | Ga0500573_0020748 | |||
| 246 | Ga0500616_0001345 | |||
| 247 | Ga0500637_0022457 | |||
| 248 | 2512345714 | |||
| 249 | 2513644448 | |||
| 250 | 2513717102 | |||
| 251 | 2530648253 | |||
| 252 | 2585233858 | |||
| 253 | 2793082262 | |||
| 254 | 2793341137 | |||
| 255 | 2876768506 | |||
| 256 | 2885389267 | |||
| 257 | 2906633974 | |||
| 258 | 2906650641 | |||
| 259 | 2977866052 | |||
| 260 | 2996897700 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1z5z-assembly2.cif.gz_B | sulfolobus solfataricus swi2/snf2 atpase c-terminal domain | 0.8557 | 450 | 663 |
| 8etw-assembly1.cif.gz_Q | class3 of ino80-hexasome complex | 0.8354 | 522 | 652 |
| 6yvh-assembly1.cif.gz_H | cwc22-cwc27-eif4a3 complex | 0.813 | 521 | 663 |
| 6igm-assembly1.cif.gz_H | cryo-em structure of human srcap complex | 0.806 | 522 | 664 |
| 5gi4-assembly1.cif.gz_A | dead-box rna helicase | 0.8056 | 522 | 663 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q0DIF8_6_124_3.40.50.10810 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain | 0.921 | 343 | 395 | 3.40.50.10810 |
| af_A4I737_67_321_3.40.50.10810 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain | 0.8919 | 230 | 397 | 3.40.50.10810 |
| af_Q2FYC2_11_224_3.40.50.10810 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain | 0.8819 | 233 | 414 | 3.40.50.10810 |
| af_A0A1D6ME19_1427_1687_3.40.50.10810 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tandem AAA-ATPase domain | 0.8818 | 228 | 410 | 3.40.50.10810 |
| af_F4I7D2_1114_1266_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.8803 | 539 | 662 | 3.40.50.300 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7J8IHY2-F1-model_v4 | ERCC excision repair 6 like 2 | 0.9151 | 274 | 392 |
GO:0004386
GO:0005524 GO:0016787 |
| AF-A0A4Y2UIK9-F1-model_v4 | DNA repair and recombination protein RAD54-like | 0.9045 | 249 | 409 |
GO:0004386
GO:0005524 GO:0005634 GO:0007131 GO:0015616 GO:0016787 GO:0045003 GO:0051301 |
| AF-A0A180FZD6-F1-model_v4 | Helicase C-terminal domain-containing protein | 0.897 | 519 | 618 |
GO:0005524
GO:0005634 GO:0006281 GO:0008094 GO:0016787 |
| AF-A0A0B6Y085-F1-model_v4 | Helicase ATP-binding domain-containing protein | 0.8907 | 219 | 409 |
GO:0003678
GO:0005524 GO:0005634 GO:0006281 GO:0006338 |
| AF-F0YMF5-F1-model_v4 | Helicase C-terminal domain-containing protein | 0.8815 | 522 | 664 |
GO:0000785
GO:0003677 GO:0003682 GO:0005524 GO:0005634 GO:0016887 GO:0042393 GO:0140658 |