F143624

General Info

Members Datasets Scaffolds Average Seq Length
129 102 258 262

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2868088558|2868094388
Length 301
Sequence GAARLEPPTDMLTERSERIRQARKLTRRAGREKAGLFLAEGAQAVREAVSAGPGRVVEVFATPAATERHPELTERAGADGVSLHLADEAALATLSETVSPQGIVAVCRSLVVSLDEALGKSSARLPGQNGLDTPEMPSVSAAPRLIAALVEARDPGNAGTVIRCADAAGADAVVLTSGSVDPQGGKAVRASAGSLFHLPIATGATVSATVQHAHARGMTVLAADGAGERDLDEAETAGWLAEPVSWLFGNEAWGLPDDVRALADHVVRVPIYGRAESLNLATAAAVCLYATARAQRKPPAR

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
6 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
7 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
8 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
9 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
10 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
11 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
12 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
13 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
14 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
15 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
16 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
17 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
18 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
19 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
20 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
21 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
22 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
29 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
30 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
31 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
32 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
33 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
34 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
35 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
36 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
37 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
38 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
39 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
40 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
41 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
42 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
43 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
44 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
45 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
46 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
47 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
48 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
49 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
50 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
51 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
52 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
53 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
54 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
55 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
56 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
57 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
58 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
59 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
60 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300049162 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300049538 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
68 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
81 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
82 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
83 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
84 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
85 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
88 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
91 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
92 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
93 2643221576 Nocardioides sp. Root614 Isolate Unclassified
94 2643221590 Nocardioides sp. Root682 Isolate Unclassified
95 2643221615 Nocardioides sp. Root224 Isolate Unclassified
96 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
97 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
98 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
99 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
100 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
101 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
102 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 80.62
Metatranscriptomes 10.85
Isolates 8.53

Biome Distribution

Category Percentage (%)
Aerial Root 1.55
Bulb 0
Endosphere 2.33
Nodule 0
Rhizoplane 10.85
Rhizosphere 76.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100489499 3300005329 Bacteria 1175
2 Ga0070689_100469316 3300005340 Bacteria 1074
3 Ga0070674_100049794 3300005356 Bacteria 2882
4 Ga0070659_100070228 3300005366 Bacteria 2782
5 Ga0068867_100481951 3300005459 Bacteria 1063
6 Ga0070684_100172192 3300005535 Bacteria 1966
7 Ga0068852_100340470 3300005616 Bacteria 1462
8 Ga0068861_100122198 3300005719 Bacteria 2103
9 Ga0075363_100136060 3300006048 Bacteria 1381
10 Ga0114129_10092666 3300009147 Bacteria 4186
11 Ga0105243_10128905 3300009148 Bacteria 2144
12 Ga0105249_10342161 3300009553 Bacteria 1513
13 Ga0105028_116948 3300009993 Bacteria 780
14 Ga0105246_10383080 3300011119 Bacteria 1163
15 Ga0157372_10115195 3300013307 Bacteria 3082
16 Ga0157372_10420989 3300013307 Bacteria 1557
17 Ga0157375_10073398 3300013308 Bacteria 3440
18 Ga0163163_10247046 3300014325 Bacteria 1834
19 Ga0163163_10323965 3300014325 Bacteria 1595
20 Ga0157380_10065082 3300014326 Bacteria 2929
21 Ga0182008_10032394 3300014497 Bacteria 2627
22 Ga0206356_11717360 3300020070 Bacteria 1471
23 Ga0224712_10056879 3300022467 Bacteria 1544
24 Ga0207664_10014566 3300025929 Bacteria 5683
25 Ga0207690_10258006 3300025932 Bacteria 1349
26 Ga0207669_10022064 3300025937 Bacteria 3375
27 Ga0207661_10052300 3300025944 Bacteria 3263
28 Ga0207708_10054932 3300026075 Bacteria 3036
29 Ga0207675_100045933 3300026118 Bacteria 4080
30 Ga0209974_10041207 3300027876 Bacteria 1537
31 Ga0307405_10166780 3300031731 Bacteria 1566
32 Ga0307405_10294661 3300031731 Bacteria 1228
33 Ga0307406_10204515 3300031901 Bacteria 1456
34 Ga0307407_10183933 3300031903 Bacteria 1387
35 Ga0307409_100037370 3300031995 Bacteria 3580
36 Ga0307416_100001497 3300032002 Bacteria 12724
37 Ga0307416_100036183 3300032002 Bacteria 3783
38 Ga0307411_10517582 3300032005 Bacteria 1012
39 Ga0307415_100001865 3300032126 Bacteria 10337
40 Ga0307415_100106690 3300032126 Bacteria 2068
41 Ga0307415_100110809 3300032126 Bacteria 2036
42 Ga0395900_0103865 3300037418 Bacteria 2919
43 Ga0395898_0199866 3300037466 Bacteria 1909
44 Ga0395901_0096443 3300038443 Bacteria 3099
45 Ga0466972_0076641 3300044658 Bacteria 1593
46 Ga0466972_0107198 3300044658 Bacteria 1321
47 Ga0466965_0005496 3300044683 Bacteria 5715
48 Ga0466965_0018230 3300044683 Bacteria 3363
49 Ga0466961_0101248 3300044693 Bacteria 1815
50 Ga0466968_0009906 3300044735 Bacteria 3680
51 Ga0466970_0002065 3300044765 Bacteria 9711
52 Ga0466970_0050613 3300044765 Bacteria 2216
53 Ga0466970_0086570 3300044765 Bacteria 1698
54 Ga0466970_0241722 3300044765 Bacteria 1010
55 Ga0466960_0003071 3300044901 Bacteria 6381
56 Ga0466960_0010751 3300044901 Bacteria 3809
57 Ga0466960_0032863 3300044901 Bacteria 2406
58 Ga0466960_0035705 3300044901 Bacteria 2324
59 Ga0466960_0053468 3300044901 Bacteria 1957
60 Ga0466960_0235288 3300044901 Bacteria 1012
61 Ga0466967_0013717 3300045976 Bacteria 6278
62 Ga0495629_0201695 3300046459 Bacteria 1375
63 Ga0495641_0010809 3300046461 Bacteria 5250
64 Ga0496102_0040757 3300048905 Bacteria 4202
65 Ga0496102_0053570 3300048905 Bacteria 3677
66 Ga0496105_0334949 3300048908 Bacteria 1211
67 Ga0496106_0107906 3300048909 Bacteria 2165
68 Ga0496108_0078195 3300048911 Bacteria 2799
69 Ga0496109_0054991 3300048912 Bacteria 3631
70 Ga0496109_0080634 3300048912 Bacteria 2998
71 Ga0496109_0263488 3300048912 Bacteria 1624
72 Ga0496112_0134283 3300048915 Bacteria 2445
73 Ga0496113_0259066 3300048916 Bacteria 1389
74 Ga0496114_0025888 3300048917 Bacteria 4799
75 Ga0496114_0332051 3300048917 Bacteria 1344
76 Ga0496114_0473055 3300048917 Bacteria 1109
77 Ga0496115_0276577 3300048918 Bacteria 1379
78 Ga0496121_0003735 3300048924 Bacteria 21334
79 Ga0496123_0053738 3300048926 Bacteria 2659
80 Ga0496124_0086257 3300048927 Bacteria 2570
81 Ga0501309_003371 3300049129 Bacteria 1806
82 Ga0501310_007257 3300049130 Bacteria 1181
83 Ga0501307_003036 3300049162 Bacteria 1619
84 Ga0501311_001208 3300049527 Bacteria 2178
85 Ga0501317_000476 3300049533 Bacteria 2824
86 Ga0501317_001871 3300049533 Bacteria 1900
87 Ga0501317_006048 3300049533 Bacteria 1317
88 Ga0501318_000269 3300049534 Bacteria 2989
89 Ga0501318_005362 3300049534 Bacteria 1269
90 Ga0501321_000364 3300049537 Bacteria 2800
91 Ga0501321_005572 3300049537 Bacteria 1250
92 Ga0501322_002034 3300049538 Bacteria 1207
93 Ga0501031_0295480 3300049568 Bacteria 1050
94 Ga0501032_0019590 3300049569 Bacteria 4730
95 Ga0501032_0403728 3300049569 Bacteria 878
96 Ga0501033_0196997 3300049570 Bacteria 1440
97 Ga0501036_0014339 3300049572 Bacteria 6597
98 Ga0501037_0081561 3300049573 Bacteria 2345
99 Ga0501038_0129855 3300049574 Bacteria 2070
100 Ga0501039_0038828 3300049575 Bacteria 3676
101 Ga0501041_0006142 3300049577 Bacteria 7019
102 Ga0501042_0013998 3300049578 Bacteria 5467
103 Ga0501043_0290182 3300049579 Bacteria 1252
104 Ga0501047_0000107 3300049581 Bacteria 102041
105 Ga0501048_0012806 3300049582 Bacteria 6231
106 Ga0501070_0415262 3300049586 Bacteria 1087
107 Ga0501072_0016304 3300049588 Bacteria 5700
108 Ga0501074_0018198 3300049590 Bacteria 5104
109 Ga0501076_0017970 3300049592 Bacteria 5379
110 Ga0501077_0138666 3300049593 Bacteria 1542
111 Ga0501079_0007641 3300049741 Bacteria 8189
112 Ga0501083_0140947 3300049744 Bacteria 1579
113 Ga0501045_0017002 3300049824 Bacteria 5166
114 Ga0501045_0142737 3300049824 Bacteria 1781
115 Ga0500556_0000588 3300053104 Bacteria 23996
116 Ga0500593_000190 3300053117 Bacteria 25004
117 Ga0466962_0093093 3300061719 Bacteria 1445
118 Ga0530510_0022147 3300061734 Bacteria 4525
119 2868094388 2868088558 Bacteria 7609351
120 2643888779 2643221576 Bacteria 5214352
121 2643957834 2643221590 Bacteria 5214697
122 2644093975 2643221615 Bacteria 5487866
123 2644323819 2643221657 Bacteria 5490246
124 2644456942 2643221681 Bacteria 3707866
125 2645726681 2643221962 Bacteria 3874254
126 2774392852 2773857762 Bacteria 5971770
127 2837275850 2837268691 Bacteria 7850704
128 2984580000 2984576629 Bacteria 4248407
129 2990260781 2990256926 Bacteria 4252839
130 Ga0070683_100489499
131 Ga0070689_100469316
132 Ga0070674_100049794
133 Ga0070659_100070228
134 Ga0068867_100481951
135 Ga0070684_100172192
136 Ga0068852_100340470
137 Ga0068861_100122198
138 Ga0075363_100136060
139 Ga0114129_10092666
140 Ga0105243_10128905
141 Ga0105249_10342161
142 Ga0105028_116948
143 Ga0105246_10383080
144 Ga0157372_10115195
145 Ga0157372_10420989
146 Ga0157375_10073398
147 Ga0163163_10247046
148 Ga0163163_10323965
149 Ga0157380_10065082
150 Ga0182008_10032394
151 Ga0206356_11717360
152 Ga0224712_10056879
153 Ga0207664_10014566
154 Ga0207690_10258006
155 Ga0207669_10022064
156 Ga0207661_10052300
157 Ga0207708_10054932
158 Ga0207675_100045933
159 Ga0209974_10041207
160 Ga0307405_10166780
161 Ga0307405_10294661
162 Ga0307406_10204515
163 Ga0307407_10183933
164 Ga0307409_100037370
165 Ga0307416_100001497
166 Ga0307416_100036183
167 Ga0307411_10517582
168 Ga0307415_100001865
169 Ga0307415_100106690
170 Ga0307415_100110809
171 Ga0395900_0103865
172 Ga0395898_0199866
173 Ga0395901_0096443
174 Ga0466972_0076641
175 Ga0466972_0107198
176 Ga0466965_0005496
177 Ga0466965_0018230
178 Ga0466961_0101248
179 Ga0466968_0009906
180 Ga0466970_0002065
181 Ga0466970_0050613
182 Ga0466970_0086570
183 Ga0466970_0241722
184 Ga0466960_0003071
185 Ga0466960_0010751
186 Ga0466960_0032863
187 Ga0466960_0035705
188 Ga0466960_0053468
189 Ga0466960_0235288
190 Ga0466967_0013717
191 Ga0495629_0201695
192 Ga0495641_0010809
193 Ga0496102_0040757
194 Ga0496102_0053570
195 Ga0496105_0334949
196 Ga0496106_0107906
197 Ga0496108_0078195
198 Ga0496109_0054991
199 Ga0496109_0080634
200 Ga0496109_0263488
201 Ga0496112_0134283
202 Ga0496113_0259066
203 Ga0496114_0025888
204 Ga0496114_0332051
205 Ga0496114_0473055
206 Ga0496115_0276577
207 Ga0496121_0003735
208 Ga0496123_0053738
209 Ga0496124_0086257
210 Ga0501309_003371
211 Ga0501310_007257
212 Ga0501307_003036
213 Ga0501311_001208
214 Ga0501317_000476
215 Ga0501317_001871
216 Ga0501317_006048
217 Ga0501318_000269
218 Ga0501318_005362
219 Ga0501321_000364
220 Ga0501321_005572
221 Ga0501322_002034
222 Ga0501031_0295480
223 Ga0501032_0019590
224 Ga0501032_0403728
225 Ga0501033_0196997
226 Ga0501036_0014339
227 Ga0501037_0081561
228 Ga0501038_0129855
229 Ga0501039_0038828
230 Ga0501041_0006142
231 Ga0501042_0013998
232 Ga0501043_0290182
233 Ga0501047_0000107
234 Ga0501048_0012806
235 Ga0501070_0415262
236 Ga0501072_0016304
237 Ga0501074_0018198
238 Ga0501076_0017970
239 Ga0501077_0138666
240 Ga0501079_0007641
241 Ga0501083_0140947
242 Ga0501045_0017002
243 Ga0501045_0142737
244 Ga0500556_0000588
245 Ga0500593_000190
246 Ga0466962_0093093
247 Ga0530510_0022147
248 2868094388
249 2643888779
250 2643957834
251 2644093975
252 2644323819
253 2644456942
254 2645726681
255 2774392852
256 2837275850
257 2984580000
258 2990260781

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00588

SpoU_methylase

SpoU rRNA Methylase family

144

289

0.95

PF08032

SpoU_sub_bind

RNA 2'-O ribose methyltransferase substrate binding

38

111

0.94

PF22435

MRM3-like_sub_bind

MRM3-like substrate binding domain

16

105

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1gz0-assembly4.cif.gz_E 23s ribosomal rna g2251 2'o-methyltransferase rlmb 0.9268 80 240
1gz0-assembly4.cif.gz_E 23s ribosomal rna g2251 2'o-methyltransferase rlmb 0.8789 80 240
5kzk-assembly1.cif.gz_B crystal structure of rrna methyltransferase from sinorhizobium meliloti 0.8723 2 238
5l0z-assembly1.cif.gz_B crystal structure of adomet bound rrna methyltransferase from sinorhizobium meliloti 0.8537 3 238
5kzk-assembly1.cif.gz_B crystal structure of rrna methyltransferase from sinorhizobium meliloti 0.852 2 238
ID Description Score Start End Superfamily
af_P94978_97_258_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.9763 78 240 3.40.1280.10
af_P94978_97_258_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.9645 78 240 3.40.1280.10
af_P9WFY5_148_322_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.9112 80 242 3.40.1280.10
af_P9WFY3_121_283_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.9094 79 239 3.40.1280.10
4x3lA02 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8911 90 241 3.40.1280.10
ID Description Score Start End GO Terms
AF-A0A640TSN0-F1-model_v4 RNA methyltransferase 0.9597 2 241 GO:0003723
GO:0005737
GO:0006396
GO:0008173
GO:0032259
AF-A0A4D4KF86-F1-model_v4 RNA 2-O ribose methyltransferase substrate binding domain-containing protein 0.9592 2 242 GO:0003723
GO:0005737
GO:0006396
GO:0008173
GO:0032259
AF-A0A0S7CYE3-F1-model_v4 Uncharacterized tRNA/rRNA methyltransferase YsgA 0.9543 84 241 GO:0003723
GO:0006396
GO:0008173
GO:0032259
AF-X8DDL6-F1-model_v4 SpoU rRNA Methylase family protein 0.9523 73 160 GO:0003723
GO:0006396
GO:0008173
GO:0032259
AF-A0A4D4KF86-F1-model_v4 RNA 2-O ribose methyltransferase substrate binding domain-containing protein 0.9515 2 242 GO:0003723
GO:0005737
GO:0006396
GO:0008173
GO:0032259

Map