F139973

General Info

Members Datasets Scaffolds Average Seq Length
128 85 256 691

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2989392574|2989392808
Length 728
Sequence LIDTVRAENFGNSAKSKNVFISIKSITMTDLSLYRNIGIFAHVDAGKTTTTERILKLTGKIHKIGEVHDGAATTDFMVQEQERGITIQSAATTCMWAGSTNQFQPHRFNIIDTPGHVDFTIEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANDSKVSRVIYVNKLDRLGADFYRVVKQVEDVLGAKPVVMTLPIGTEENFVGVIDLLTRKAWIWDNSGDPLKYEIQDVPADMAEQVEEWRAKLIDQVADQDDDIMEKYLEGEEPTIEEIKKCIRKGTIAMDFFPTFCGSSFKNKGVQLVLDGVIEYLPNPTEVNPQPETDIEGVPTGEHAIVDPNRPFRGLVFKIMDDRFGALNFVRVYSGKLKKGDTVLNTYTGKTERIGRMVEMHADDRNEIETAQAGDIIALIGLKNVQTGHTLCDPDKPATLEPMVFPDPVISIAISPKDKGSNEKMGIAIGKMVAEDPSFRVETDQESGETIIKGMGELHLDIKVDILKRTHGVEVNVGKPQVAYRETITQRIEDEYVHKKQSGGSGQYAKINYIIEPSEPGSGFQFESSVVGGNVPREFWPAVEKGFKASIDKGVLAGFPCVDFKVNLTDGAFHAVDSSAIAFEIAARAAYRQTVPKASPQLLEPIMKVDVFTPEAHVGDVIGDLNRRRGMIKSQDPGVTGVRIKADVPLSDMFGYIGDLRTMTSGRGQFSMEFSHYTPCPKNVADEVIKEVKEREKNK

Samples

Sample ID Description Type Environment
1 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
10 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
11 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
12 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
13 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
14 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
25 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
26 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
27 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
28 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
29 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
30 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
31 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
32 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
33 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
34 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
35 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
36 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
37 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
38 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
41 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
42 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
43 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
44 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
45 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
46 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
47 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
48 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
49 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
50 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
51 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
52 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
53 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
54 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
55 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
56 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
58 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
59 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
60 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
61 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
62 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
63 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
64 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
65 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
66 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
67 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
68 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
69 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
70 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
71 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
72 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
73 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
74 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
75 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
76 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
77 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
78 2887630918 Psychrosphaera haliotis UCD-MCMsp1aY Isolate Unclassified
79 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
80 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
81 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
82 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
83 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
84 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified
85 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.56
Metatranscriptomes 12.5
Isolates 10.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.78
Nodule 0
Rhizoplane 0
Rhizosphere 82.81
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000165 3300001977 Bacteria 8589
2 rootH1_10075658 3300003323 Bacteria 7150
3 Ga0065714_10065467 3300005288 Bacteria 9916
4 Ga0065704_10094563 3300005289 Bacteria 2537
5 Ga0065712_10084169 3300005290 Bacteria 2785
6 Ga0070661_100001159 3300005344 Bacteria 18561
7 Ga0068867_100000238 3300005459 Bacteria 36084
8 Ga0070665_100000007 3300005548 Bacteria 649878
9 Ga0070664_100001295 3300005564 Bacteria 20026
10 Ga0068871_100110069 3300006358 Bacteria 2316
11 Ga0068865_100026253 3300006881 Bacteria 3839
12 Ga0105243_10000253 3300009148 Bacteria 61384
13 Ga0105242_10037664 3300009176 Bacteria 3886
14 Ga0157373_10003048 3300013100 Bacteria 12642
15 Ga0157370_10001085 3300013104 Bacteria 34081
16 Ga0207649_10013804 3300025920 Bacteria 4517
17 Ga0207686_10041276 3300025934 Bacteria 2812
18 Ga0207709_10000268 3300025935 Bacteria 61343
19 Ga0207679_10002680 3300025945 Bacteria 11000
20 Ga0207678_10004894 3300026067 Bacteria 12032
21 Ga0207648_10000759 3300026089 Bacteria 36227
22 Ga0207648_10060609 3300026089 Bacteria 3300
23 Ga0207675_100003523 3300026118 Bacteria 15269
24 Ga0268266_10000033 3300028379 Bacteria 388374
25 Ga0265327_10001206 3300031251 Bacteria 34837
26 Ga0265327_10002200 3300031251 Bacteria 21371
27 Ga0265327_10004269 3300031251 Bacteria 12803
28 Ga0265316_10001953 3300031344 Bacteria 21664
29 Ga0265316_10054071 3300031344 Bacteria 3144
30 Ga0307408_100000058 3300031548 Bacteria 135057
31 Ga0307408_100000249 3300031548 Bacteria 56039
32 Ga0307408_100002613 3300031548 Bacteria 12539
33 Ga0316579_10006058 3300031691 Bacteria 4915
34 Ga0265314_10011067 3300031711 Bacteria 7478
35 Ga0316576_10001841 3300031727 Bacteria 11772
36 Ga0316576_10003258 3300031727 Bacteria 9472
37 Ga0316576_10005536 3300031727 Bacteria 7732
38 Ga0316578_10017584 3300031728 Bacteria 3895
39 Ga0316577_10048925 3300031733 Bacteria 2360
40 Ga0307406_10001680 3300031901 Bacteria 12168
41 Ga0307406_10010178 3300031901 Bacteria 5299
42 Ga0307407_10000290 3300031903 Bacteria 14832
43 Ga0307412_10000093 3300031911 Bacteria 75863
44 Ga0307409_100002448 3300031995 Bacteria 9709
45 Ga0307416_100002145 3300032002 Bacteria 11166
46 Ga0316580_10004073 3300032139 Bacteria 4213
47 Ga0316593_10008833 3300032168 Bacteria 2826
48 Ga0316593_10012738 3300032168 Bacteria 2474
49 Ga0316593_10013697 3300032168 Bacteria 2407
50 Ga0316593_10013866 3300032168 Bacteria 2393
51 Ga0316593_10014076 3300032168 Bacteria 2379
52 Ga0316593_10014211 3300032168 Bacteria 2370
53 Ga0316593_10015559 3300032168 Bacteria 2291
54 Ga0316593_10018419 3300032168 Bacteria 2146
55 Ga0316586_1000323 3300033527 Bacteria 4410
56 Ga0316587_1002154 3300033529 Bacteria 2585
57 Ga0316587_1002913 3300033529 Bacteria 2342
58 Ga0316596_1005350 3300033541 Bacteria 2931
59 Ga0316596_1007967 3300033541 Bacteria 2513
60 Ga0316596_1010030 3300033541 Bacteria 2284
61 Ga0316596_1010335 3300033541 Bacteria 2255
62 Ga0316596_1010351 3300033541 Bacteria 2254
63 Ga0316574_0000133 3300035398 Bacteria 23523
64 Ga0316574_0004764 3300035398 Bacteria 7165
65 Ga0316574_0007711 3300035398 Bacteria 5918
66 Ga0316574_0025858 3300035398 Bacteria 3526
67 Ga0316582_0001884 3300036647 Bacteria 9527
68 Ga0316582_0002022 3300036647 Bacteria 9317
69 Ga0316582_0004643 3300036647 Bacteria 6976
70 Ga0316582_0010560 3300036647 Bacteria 5063
71 Ga0316582_0035241 3300036647 Bacteria 3088
72 Ga0316584_0010955 3300036712 Bacteria 6352
73 Ga0316584_0030954 3300036712 Bacteria 3956
74 Ga0316584_0041455 3300036712 Bacteria 3431
75 Ga0400483_019375 3300039062 Bacteria 5049
76 Ga0400483_079217 3300039062 Bacteria 83041
77 Ga0400483_092352 3300039062 Bacteria 246443
78 Ga0400483_138462 3300039062 Bacteria 3517
79 Ga0400483_151624 3300039062 Bacteria 14753
80 Ga0400483_172213 3300039062 Bacteria 2864
81 Ga0400483_222800 3300039062 Bacteria 244239
82 Ga0400483_232168 3300039062 Bacteria 10074
83 Ga0400483_234390 3300039062 Bacteria 4899
84 Ga0439453_0000290 3300041408 Bacteria 5226
85 Ga0450890_000047 3300042127 Bacteria 26490
86 Ga0450892_000071 3300042130 Bacteria 11090
87 Ga0451577_0000105 3300042876 Bacteria 184360
88 Ga0453683_0000099 3300044673 Bacteria 129591
89 Ga0453683_0015331 3300044673 Bacteria 4965
90 Ga0453683_0052700 3300044673 Bacteria 2547
91 Ga0453684_0003537 3300044712 Bacteria 34947
92 Ga0451576_0000001 3300045051 Bacteria 1802108
93 Ga0451576_0000016 3300045051 Bacteria 565050
94 Ga0451576_0006715 3300045051 Bacteria 14024
95 Ga0495635_0027194 3300046663 Bacteria 3980
96 Ga0496117_0000928 3300048920 Bacteria 44835
97 Ga0496126_0000480 3300048929 Bacteria 79257
98 Ga0501032_0008878 3300049569 Bacteria 7308
99 Ga0501043_0023809 3300049579 Bacteria 4804
100 Ga0501047_0008487 3300049581 Bacteria 9692
101 Ga0501068_0000122 3300049584 Bacteria 34346
102 Ga0501069_0001566 3300049585 Bacteria 11313
103 Ga0501072_0000162 3300049588 Bacteria 48896
104 Ga0501073_0001117 3300049589 Bacteria 19486
105 Ga0501073_0001344 3300049589 Bacteria 18113
106 Ga0501074_0004236 3300049590 Bacteria 10235
107 Ga0501076_0016518 3300049592 Bacteria 5596
108 Ga0501077_0012500 3300049593 Bacteria 5315
109 Ga0501198_002646 3300049649 Bacteria 2422
110 Ga0501079_0005811 3300049741 Bacteria 9224
111 Ga0501080_0035945 3300049742 Bacteria 4624
112 Ga0501083_0004377 3300049744 Bacteria 9954
113 Ga0500616_0000748 3300053153 Bacteria 37453
114 Ga0501084_0001037 3300054114 Bacteria 21598
115 2989392808 2989392574 Bacteria 4554005
116 2566035510 2565956521 Bacteria 4468993
117 2649121489 2648501241 Bacteria 5312320
118 2652974393 2651869818 Bacteria 5864031
119 2691330501 2690315857 Bacteria 4396207
120 2738716339 2738541276 Bacteria 4690596
121 2887633818 2887630918 Bacteria 3239855
122 2894515147 2894510363 Bacteria 5121143
123 2916181975 2916178963 Bacteria 5265078
124 2919497930 2919497567 Bacteria 4408621
125 2919535556 2919534386 Bacteria 4577686
126 2919691995 2919688452 Bacteria 4595932
127 8001525597 8001522603 Bacteria 4726425
128 8002750041 8002745576 Bacteria 4840272
129 JGI24746J21847_1000165
130 rootH1_10075658
131 Ga0065714_10065467
132 Ga0065704_10094563
133 Ga0065712_10084169
134 Ga0070661_100001159
135 Ga0068867_100000238
136 Ga0070665_100000007
137 Ga0070664_100001295
138 Ga0068871_100110069
139 Ga0068865_100026253
140 Ga0105243_10000253
141 Ga0105242_10037664
142 Ga0157373_10003048
143 Ga0157370_10001085
144 Ga0207649_10013804
145 Ga0207686_10041276
146 Ga0207709_10000268
147 Ga0207679_10002680
148 Ga0207678_10004894
149 Ga0207648_10000759
150 Ga0207648_10060609
151 Ga0207675_100003523
152 Ga0268266_10000033
153 Ga0265327_10001206
154 Ga0265327_10002200
155 Ga0265327_10004269
156 Ga0265316_10001953
157 Ga0265316_10054071
158 Ga0307408_100000058
159 Ga0307408_100000249
160 Ga0307408_100002613
161 Ga0316579_10006058
162 Ga0265314_10011067
163 Ga0316576_10001841
164 Ga0316576_10003258
165 Ga0316576_10005536
166 Ga0316578_10017584
167 Ga0316577_10048925
168 Ga0307406_10001680
169 Ga0307406_10010178
170 Ga0307407_10000290
171 Ga0307412_10000093
172 Ga0307409_100002448
173 Ga0307416_100002145
174 Ga0316580_10004073
175 Ga0316593_10008833
176 Ga0316593_10012738
177 Ga0316593_10013697
178 Ga0316593_10013866
179 Ga0316593_10014076
180 Ga0316593_10014211
181 Ga0316593_10015559
182 Ga0316593_10018419
183 Ga0316586_1000323
184 Ga0316587_1002154
185 Ga0316587_1002913
186 Ga0316596_1005350
187 Ga0316596_1007967
188 Ga0316596_1010030
189 Ga0316596_1010335
190 Ga0316596_1010351
191 Ga0316574_0000133
192 Ga0316574_0004764
193 Ga0316574_0007711
194 Ga0316574_0025858
195 Ga0316582_0001884
196 Ga0316582_0002022
197 Ga0316582_0004643
198 Ga0316582_0010560
199 Ga0316582_0035241
200 Ga0316584_0010955
201 Ga0316584_0030954
202 Ga0316584_0041455
203 Ga0400483_019375
204 Ga0400483_079217
205 Ga0400483_092352
206 Ga0400483_138462
207 Ga0400483_151624
208 Ga0400483_172213
209 Ga0400483_222800
210 Ga0400483_232168
211 Ga0400483_234390
212 Ga0439453_0000290
213 Ga0450890_000047
214 Ga0450892_000071
215 Ga0451577_0000105
216 Ga0453683_0000099
217 Ga0453683_0015331
218 Ga0453683_0052700
219 Ga0453684_0003537
220 Ga0451576_0000001
221 Ga0451576_0000016
222 Ga0451576_0006715
223 Ga0495635_0027194
224 Ga0496117_0000928
225 Ga0496126_0000480
226 Ga0501032_0008878
227 Ga0501043_0023809
228 Ga0501047_0008487
229 Ga0501068_0000122
230 Ga0501069_0001566
231 Ga0501072_0000162
232 Ga0501073_0001117
233 Ga0501073_0001344
234 Ga0501074_0004236
235 Ga0501076_0016518
236 Ga0501077_0012500
237 Ga0501198_002646
238 Ga0501079_0005811
239 Ga0501080_0035945
240 Ga0501083_0004377
241 Ga0500616_0000748
242 Ga0501084_0001037
243 2989392808
244 2566035510
245 2649121489
246 2652974393
247 2691330501
248 2738716339
249 2887633818
250 2894515147
251 2916181975
252 2919497930
253 2919535556
254 2919691995
255 8001525597
256 8002750041

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03764

EFG_IV

Elongation factor G, domain IV

509

628

0.99

PF14492

EFG_III

Elongation Factor G, domain III

434

508

0.99

PF00679

EFG_C

Elongation factor G C-terminus

630

717

0.98

PF03144

GTP_EFTU_D2

Elongation factor Tu domain 2

354

421

0.98

PF22042

EF-G_D2

Elongation factor G domain 2

340

423

0.98

PF00009

GTP_EFTU

Elongation factor Tu GTP binding domain

32

312

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vh6-assembly1.cif.gz_A 2.6 angstrom resolution crystal structure of n-terminal fragment (residues 1-406) of elongation factor g from bacillus subtilis. 0.9497 3 398
6bk7-assembly2.cif.gz_B 1.83 angstrom resolution crystal structure of n-terminal fragment (residues 1-404) of elongation factor g from enterococcus faecalis 0.9432 3 402
5ty0-assembly1.cif.gz_A 2.22 angstrom crystal structure of n-terminal fragment (residues 1-419) of elongation factor g from legionella pneumophila. 0.9428 1 396
5ty0-assembly1.cif.gz_A 2.22 angstrom crystal structure of n-terminal fragment (residues 1-419) of elongation factor g from legionella pneumophila. 0.9379 1 396
5tv2-assembly1.cif.gz_A crystal structure of a fragment (1-405) of an elongation factor g from vibrio vulnificus cmcp6 0.937 1 396
ID Description Score Start End Superfamily
af_A4I3S3_442_510_3.30.70.870 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Elongation Factor G (Translational Gtpase), domain 3 0.9783 409 471 3.30.70.870
4myuA05 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.976 599 679 3.30.70.240
af_Q9USZ1_550_674_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9722 480 595 3.30.230.10
af_Q969S9_492_565_3.30.70.870 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Elongation Factor G (Translational Gtpase), domain 3 0.9718 408 480 3.30.70.870
af_Q55G92_457_533_3.30.70.870 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Elongation Factor G (Translational Gtpase), domain 3 0.9702 403 477 3.30.70.870
ID Description Score Start End GO Terms
AF-A0A227J114-F1-model_v4 Elongation factor EFG domain-containing protein 0.9934 596 679 GO:0003746
GO:0005525
GO:0017111
GO:0032790
AF-A0A436DQT7-F1-model_v4 Elongation factor G 0.986 139 278 GO:0003746
GO:0005525
GO:0032790
AF-A0A529L458-F1-model_v4 GTP-binding protein 0.9843 91 208 GO:0003924
GO:0005525
GO:0032790
AF-A0A6M0AQQ7-F1-model_v4 Elongation factor G 0.9842 603 693 GO:0003746
GO:0005525
GO:0032790
AF-A0A6P6GEK2-F1-model_v4 Elongation factor G-1, mitochondrial-like 0.9818 548 693 GO:0003746
GO:0003924
GO:0005525
GO:0005739
GO:0070125

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