F139084

General Info

Members Datasets Scaffolds Average Seq Length
128 68 127 280

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0106140|Ga0451576_0106140_395_1327
Length 310
Sequence MPELAEVEFYRKRWHLAAVGECVCDVHWHEGKRVFRGIDRQTFRRALHGTILETSEARAKQMIFRFTGNVWLGVHLGMSGELSVQPADYAPGKHDHLVLVMGEEARTRQPTRGAASRVSEPPPRAEGIRPRHSLVYTDPRMFGQILFHAGADAPVWWRGIAPAILSADFRVSDIAAFLRRRARAPIKAVLLMQERFPGIGNWMADEILWRAAIHPARPAGSLKPGEIRALWRECRHVCRLALDAIAGKGNTLPPDLNVNIPRTWLFKHRWRKGGKDPQTGTPLAHATIGGRTTCWSPARQKKRSANSGKR

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
8 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
9 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
10 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
11 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
16 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
17 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
18 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
19 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
20 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
21 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
22 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
23 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
24 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
25 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
26 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
27 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
28 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
29 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
30 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
31 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
32 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
33 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
34 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
35 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
36 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
37 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
38 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
39 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
40 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
41 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
42 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
43 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
44 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
45 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
46 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
47 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
48 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
49 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
50 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
51 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
52 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
53 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
54 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
55 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
58 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
60 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
61 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
62 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
63 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
64 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
65 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
67 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
68 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.22
Metatranscriptomes 0
Isolates 0.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.56
Nodule 0
Rhizoplane 0
Rhizosphere 92.19
Stem 0
Stem Tuber 0
Unclassified 6.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10003802 3300003320 Bacteria 24313
2 rootH2_10051144 3300003320 Bacteria 9433
3 rootL2_10083794 3300003322 Bacteria 4887
4 Ga0070658_10038168 3300005327 Bacteria 3874
5 Ga0068855_100358059 3300005563 Unclassified 1606
6 Ga0068856_100000673 3300005614 Bacteria 37096
7 Ga0068856_100470814 3300005614 Bacteria 1277
8 Ga0070717_10331153 3300006028 Bacteria 1358
9 Ga0105237_10024378 3300009545 Bacteria 6189
10 Ga0157375_10408753 3300013308 Archaea 1524
11 Ga0213876_10054105 3300021384 Bacteria 2120
12 Ga0207705_10023978 3300025909 Bacteria 4354
13 Ga0207671_10014634 3300025914 Bacteria 6189
14 Ga0207661_10010856 3300025944 Bacteria 6573
15 Ga0207702_10430607 3300026078 Bacteria 1277
16 Ga0265319_1000046 3300028563 Bacteria 101716
17 Ga0265319_1002572 3300028563 Bacteria 9794
18 Ga0265319_1006578 3300028563 Bacteria 5365
19 Ga0265334_10001545 3300028573 Bacteria 11101
20 Ga0265334_10004985 3300028573 Bacteria 5835
21 Ga0265318_10000023 3300028577 Bacteria 160826
22 Ga0265318_10005249 3300028577 Bacteria 6100
23 Ga0265318_10036700 3300028577 Bacteria 1879
24 Ga0265323_10002167 3300028653 Bacteria 9154
25 Ga0265323_10006076 3300028653 Bacteria 5097
26 Ga0265323_10019423 3300028653 Bacteria 2620
27 Ga0265323_10025293 3300028653 Bacteria 2248
28 Ga0265323_10033707 3300028653 Unclassified 1894
29 Ga0265322_10000811 3300028654 Bacteria 11210
30 Ga0265336_10014113 3300028666 Bacteria 2651
31 Ga0307515_10066435 3300028794 Bacteria 4997
32 Ga0265338_10076387 3300028800 Bacteria 2838
33 Ga0265324_10073571 3300029957 Bacteria 1164
34 Ga0265330_10027938 3300031235 Bacteria 2546
35 Ga0265320_10002546 3300031240 Bacteria 12664
36 Ga0265320_10006519 3300031240 Bacteria 7354
37 Ga0265320_10009469 3300031240 Bacteria 5874
38 Ga0265320_10025550 3300031240 Bacteria 3103
39 Ga0265340_10051354 3300031247 Bacteria 1997
40 Ga0265339_10027879 3300031249 Bacteria 3217
41 Ga0265331_10002667 3300031250 Bacteria 11942
42 Ga0265331_10008704 3300031250 Bacteria 5751
43 Ga0265327_10000088 3300031251 Bacteria 198019
44 Ga0265327_10076518 3300031251 Bacteria 1663
45 Ga0265316_10019838 3300031344 Bacteria 5739
46 Ga0265316_10021324 3300031344 Bacteria 5489
47 Ga0265313_10088554 3300031595 Bacteria 1394
48 Ga0307508_10000948 3300031616 Bacteria 33780
49 Ga0265314_10002283 3300031711 Bacteria 19845
50 Ga0265314_10010975 3300031711 Bacteria 7516
51 Ga0265314_10014351 3300031711 Bacteria 6346
52 Ga0265314_10067169 3300031711 Bacteria 2416
53 Ga0265314_10111939 3300031711 Bacteria 1733
54 Ga0265314_10129604 3300031711 Bacteria 1576
55 Ga0265342_10015116 3300031712 Bacteria 5091
56 Ga0265342_10038127 3300031712 Bacteria 2928
57 Ga0265342_10054824 3300031712 Bacteria 2368
58 Ga0307413_10153881 3300031824 Unclassified 1606
59 Ga0373933_0139680 3300035724 Bacteria 1529
60 Ga0395905_0000018 3300037471 Bacteria 369321
61 Ga0395905_0267821 3300037471 Bacteria 1594
62 Ga0436365_1278423 3300039437 Bacteria 10663
63 Ga0439445_0011262 3300042004 Bacteria 2130
64 Ga0451577_0000025 3300042876 Bacteria 403632
65 Ga0451577_0040264 3300042876 Bacteria 4196
66 Ga0451577_0303920 3300042876 Bacteria 1445
67 Ga0451577_0317049 3300042876 Bacteria 1413
68 Ga0451577_0550161 3300042876 Unclassified 1048
69 Ga0453683_0001943 3300044673 Bacteria 16796
70 Ga0453683_0034255 3300044673 Bacteria 3202
71 Ga0453683_0046416 3300044673 Bacteria 2724
72 Ga0453684_0000266 3300044712 Bacteria 225447
73 Ga0453684_0005421 3300044712 Bacteria 25277
74 Ga0453684_0019934 3300044712 Bacteria 10169
75 Ga0453684_0033345 3300044712 Bacteria 7183
76 Ga0466971_0062430 3300044719 Bacteria 1686
77 Ga0466957_0183952 3300044842 Bacteria 1366
78 Ga0451576_0000071 3300045051 Bacteria 258795
79 Ga0451576_0002181 3300045051 Bacteria 30265
80 Ga0451576_0007574 3300045051 Bacteria 12936
81 Ga0451576_0029136 3300045051 Bacteria 5908
82 Ga0451576_0106140 3300045051 Bacteria 2923
83 Ga0451576_0145392 3300045051 Bacteria 2472
84 Ga0495611_0049070 3300046648 Bacteria 1899
85 Ga0501031_0028474 3300049568 Bacteria 3641
86 Ga0501031_0088905 3300049568 Bacteria 2014
87 Ga0501032_0001360 3300049569 Bacteria 19452
88 Ga0501032_0002592 3300049569 Bacteria 14145
89 Ga0501032_0043909 3300049569 Bacteria 3026
90 Ga0501033_0003978 3300049570 Bacteria 11975
91 Ga0501033_0033355 3300049570 Bacteria 3865
92 Ga0501034_0409959 3300049571 Bacteria 1277
93 Ga0501036_0000906 3300049572 Bacteria 22209
94 Ga0501036_0153207 3300049572 Bacteria 1944
95 Ga0501037_0001471 3300049573 Bacteria 17274
96 Ga0501037_0007542 3300049573 Bacteria 7967
97 Ga0501038_0063648 3300049574 Bacteria 3147
98 Ga0501038_0265225 3300049574 Bacteria 1356
99 Ga0501042_0021377 3300049578 Bacteria 4509
100 Ga0501043_0012633 3300049579 Bacteria 6603
101 Ga0501046_0011026 3300049580 Bacteria 7745
102 Ga0501046_0011169 3300049580 Bacteria 7693
103 Ga0501046_0070055 3300049580 Bacteria 2727
104 Ga0501047_0008802 3300049581 Bacteria 9522
105 Ga0501047_0018362 3300049581 Bacteria 6704
106 Ga0501047_0033653 3300049581 Bacteria 4946
107 Ga0501047_0041752 3300049581 Bacteria 4431
108 Ga0501048_0012429 3300049582 Bacteria 6333
109 Ga0501048_0027814 3300049582 Bacteria 4106
110 Ga0501068_0074000 3300049584 Bacteria 2082
111 Ga0501070_0072050 3300049586 Bacteria 2860
112 Ga0501073_0185650 3300049589 Bacteria 1439
113 Ga0501243_003437 3300049675 Bacteria 2344
114 Ga0501080_0074028 3300049742 Bacteria 3169
115 Ga0501080_0089457 3300049742 Bacteria 2860
116 Ga0501083_0003559 3300049744 Bacteria 10915
117 Ga0501083_0010103 3300049744 Bacteria 6652
118 Ga0501083_0020148 3300049744 Bacteria 4641
119 Ga0501083_0077654 3300049744 Bacteria 2203
120 Ga0501035_0000932 3300049822 Bacteria 30968
121 Ga0501035_0005072 3300049822 Bacteria 12482
122 Ga0501044_0000371 3300049823 Bacteria 56211
123 Ga0501044_0002225 3300049823 Bacteria 22224
124 Ga0501044_0004757 3300049823 Bacteria 15183
125 Ga0501044_0007910 3300049823 Bacteria 11692
126 Ga0500644_0160509 3300053088 Bacteria 908
127 Ga0500595_034690 3300053119 Bacteria 1667

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049568 Ga0501031_0088905 Ga0501031_0088905_12_749 214
2 3300005614 Ga0068856_100470814 Ga0068856_1004708141 240
3 3300026078 Ga0207702_10430607 Ga0207702_104306071 240
4 3300049742 Ga0501080_0074028 Ga0501080_0074028_209_973 253
5 3300028654 Ga0265322_10000811 Ga0265322_100008117 254
6 3300009545 Ga0105237_10024378 Ga0105237_100243782 255
7 3300025914 Ga0207671_10014634 Ga0207671_100146346 255
8 3300045051 Ga0451576_0029136 Ga0451576_0029136_4901_5725 260
9 3300035724 Ga0373933_0139680 Ga0373933_0139680_386_1219 262
10 3300049744 Ga0501083_0003559 Ga0501083_0003559_6201_6989 262
11 iso_pu_bacteria 2786546940 2788436797 262
12 3300045051 Ga0451576_0002181 Ga0451576_0002181_14568_15449 263
13 3300049675 Ga0501243_003437 Ga0501243_003437_1372_2169 265
14 3300003320 rootH2_10051144 rootH2_100511444 266
15 3300005614 Ga0068856_100000673 Ga0068856_1000006733 266
16 3300037471 Ga0395905_0000018 Ga0395905_0000018_18839_19657 266
17 3300044719 Ga0466971_0062430 Ga0466971_0062430_341_1324 266
18 3300044842 Ga0466957_0183952 Ga0466957_0183952_203_1186 266
19 3300053119 Ga0500595_034690 Ga0500595_034690_427_1242 266
20 3300021384 Ga0213876_10054105 Ga0213876_100541052 267
21 3300039437 Ga0436365_1278423 Ga0436365_1278423_9460_10281 267
22 3300042876 Ga0451577_0000025 Ga0451577_0000025_257941_258759 272
23 3300006028 Ga0070717_10331153 Ga0070717_103311532 273
24 3300028653 Ga0265323_10002167 Ga0265323_100021675 273
25 3300028666 Ga0265336_10014113 Ga0265336_100141134 273
26 3300029957 Ga0265324_10073571 Ga0265324_100735711 273
27 3300031344 Ga0265316_10021324 Ga0265316_100213243 273
28 3300031712 Ga0265342_10015116 Ga0265342_100151162 273
29 3300042876 Ga0451577_0317049 Ga0451577_0317049_430_1254 273
30 3300044673 Ga0453683_0001943 Ga0453683_0001943_8987_9811 273
31 3300044673 Ga0453683_0034255 Ga0453683_0034255_765_1589 273
32 3300005327 Ga0070658_10038168 Ga0070658_100381682 274
33 3300005563 Ga0068855_100358059 Ga0068855_1003580592 274
34 3300013308 Ga0157375_10408753 Ga0157375_104087532 274
35 3300025909 Ga0207705_10023978 Ga0207705_100239782 274
36 3300025944 Ga0207661_10010856 Ga0207661_100108569 274
37 3300028563 Ga0265319_1002572 Ga0265319_10025729 274
38 3300028563 Ga0265319_1006578 Ga0265319_10065785 274
39 3300028573 Ga0265334_10001545 Ga0265334_100015453 274
40 3300028573 Ga0265334_10004985 Ga0265334_100049853 274
41 3300028577 Ga0265318_10000023 Ga0265318_1000002317 274
42 3300028577 Ga0265318_10036700 Ga0265318_100367002 274
43 3300028653 Ga0265323_10006076 Ga0265323_100060765 274
44 3300028653 Ga0265323_10019423 Ga0265323_100194233 274
45 3300028653 Ga0265323_10025293 Ga0265323_100252932 274
46 3300028653 Ga0265323_10033707 Ga0265323_100337073 274
47 3300031235 Ga0265330_10027938 Ga0265330_100279383 274
48 3300031240 Ga0265320_10006519 Ga0265320_100065194 274
49 3300031240 Ga0265320_10025550 Ga0265320_100255504 274
50 3300031249 Ga0265339_10027879 Ga0265339_100278792 274
51 3300031250 Ga0265331_10008704 Ga0265331_100087041 274
52 3300031251 Ga0265327_10000088 Ga0265327_10000088136 274
53 3300031251 Ga0265327_10076518 Ga0265327_100765182 274
54 3300031344 Ga0265316_10019838 Ga0265316_100198383 274
55 3300031595 Ga0265313_10088554 Ga0265313_100885542 274
56 3300031616 Ga0307508_10000948 Ga0307508_100009486 274
57 3300031711 Ga0265314_10010975 Ga0265314_100109757 274
58 3300031711 Ga0265314_10014351 Ga0265314_100143517 274
59 3300031711 Ga0265314_10067169 Ga0265314_100671692 274
60 3300031711 Ga0265314_10111939 Ga0265314_101119392 274
61 3300031711 Ga0265314_10129604 Ga0265314_101296042 274
62 3300031712 Ga0265342_10038127 Ga0265342_100381273 274
63 3300031712 Ga0265342_10054824 Ga0265342_100548243 274
64 3300031824 Ga0307413_10153881 Ga0307413_101538812 274
65 3300037471 Ga0395905_0267821 Ga0395905_0267821_225_1106 274
66 3300042004 Ga0439445_0011262 Ga0439445_0011262_1216_2040 274
67 3300042876 Ga0451577_0040264 Ga0451577_0040264_2801_3631 274
68 3300042876 Ga0451577_0550161 Ga0451577_0550161_147_1028 274
69 3300044673 Ga0453683_0046416 Ga0453683_0046416_1142_1969 274
70 3300044712 Ga0453684_0000266 Ga0453684_0000266_76078_76908 274
71 3300044712 Ga0453684_0019934 Ga0453684_0019934_6383_7294 274
72 3300044712 Ga0453684_0033345 Ga0453684_0033345_3752_4576 274
73 3300045051 Ga0451576_0000071 Ga0451576_0000071_203009_203890 274
74 3300045051 Ga0451576_0007574 Ga0451576_0007574_3482_4366 274
75 3300045051 Ga0451576_0106140 Ga0451576_0106140_395_1327 274
76 3300045051 Ga0451576_0145392 Ga0451576_0145392_232_1056 274
77 3300046648 Ga0495611_0049070 Ga0495611_0049070_383_1210 274
78 3300049568 Ga0501031_0028474 Ga0501031_0028474_1527_2354 274
79 3300049569 Ga0501032_0001360 Ga0501032_0001360_5925_6842 274
80 3300049569 Ga0501032_0002592 Ga0501032_0002592_2017_2844 274
81 3300049569 Ga0501032_0043909 Ga0501032_0043909_1220_2047 274
82 3300049570 Ga0501033_0003978 Ga0501033_0003978_8209_9036 274
83 3300049570 Ga0501033_0033355 Ga0501033_0033355_998_1825 274
84 3300049571 Ga0501034_0409959 Ga0501034_0409959_63_887 274
85 3300049572 Ga0501036_0000906 Ga0501036_0000906_9820_10647 274
86 3300049572 Ga0501036_0153207 Ga0501036_0153207_956_1873 274
87 3300049573 Ga0501037_0001471 Ga0501037_0001471_6939_7766 274
88 3300049573 Ga0501037_0007542 Ga0501037_0007542_1767_2594 274
89 3300049574 Ga0501038_0063648 Ga0501038_0063648_280_1107 274
90 3300049574 Ga0501038_0265225 Ga0501038_0265225_245_1072 274
91 3300049578 Ga0501042_0021377 Ga0501042_0021377_2040_2867 274
92 3300049579 Ga0501043_0012633 Ga0501043_0012633_2085_2912 274
93 3300049580 Ga0501046_0011026 Ga0501046_0011026_5292_6209 274
94 3300049580 Ga0501046_0011169 Ga0501046_0011169_1271_2188 274
95 3300049580 Ga0501046_0070055 Ga0501046_0070055_1730_2563 274
96 3300049581 Ga0501047_0008802 Ga0501047_0008802_5921_6838 274
97 3300049581 Ga0501047_0018362 Ga0501047_0018362_4544_5377 274
98 3300049581 Ga0501047_0033653 Ga0501047_0033653_2731_3558 274
99 3300049581 Ga0501047_0041752 Ga0501047_0041752_158_1075 274
100 3300049582 Ga0501048_0012429 Ga0501048_0012429_1557_2384 274
101 3300049582 Ga0501048_0027814 Ga0501048_0027814_2053_2880 274
102 3300049584 Ga0501068_0074000 Ga0501068_0074000_218_1045 274
103 3300049586 Ga0501070_0072050 Ga0501070_0072050_1676_2503 274
104 3300049589 Ga0501073_0185650 Ga0501073_0185650_137_964 274
105 3300049742 Ga0501080_0089457 Ga0501080_0089457_1158_1985 274
106 3300049744 Ga0501083_0010103 Ga0501083_0010103_5728_6561 274
107 3300049744 Ga0501083_0020148 Ga0501083_0020148_133_966 274
108 3300049744 Ga0501083_0077654 Ga0501083_0077654_121_945 274
109 3300049822 Ga0501035_0000932 Ga0501035_0000932_5900_6817 274
110 3300049822 Ga0501035_0005072 Ga0501035_0005072_9615_10442 274
111 3300049823 Ga0501044_0000371 Ga0501044_0000371_49398_50315 274
112 3300049823 Ga0501044_0002225 Ga0501044_0002225_21158_22063 274
113 3300049823 Ga0501044_0004757 Ga0501044_0004757_12669_13496 274
114 3300049823 Ga0501044_0007910 Ga0501044_0007910_1357_2184 274
115 3300053088 Ga0500644_0160509 Ga0500644_0160509_67_891 274
116 3300003322 rootL2_10083794 rootL2_100837943 280
117 3300031240 Ga0265320_10009469 Ga0265320_100094695 281
118 3300042876 Ga0451577_0303920 Ga0451577_0303920_258_1118 281
119 3300044712 Ga0453684_0005421 Ga0453684_0005421_11430_12290 281
120 3300003320 rootH2_10003802 rootH2_1000380216 282
121 3300028563 Ga0265319_1000046 Ga0265319_100004672 282
122 3300028577 Ga0265318_10005249 Ga0265318_100052494 282
123 3300028794 Ga0307515_10066435 Ga0307515_100664352 282
124 3300028800 Ga0265338_10076387 Ga0265338_100763871 282
125 3300031240 Ga0265320_10002546 Ga0265320_1000254612 282
126 3300031247 Ga0265340_10051354 Ga0265340_100513542 282
127 3300031250 Ga0265331_10002667 Ga0265331_100026674 282
128 3300031711 Ga0265314_10002283 Ga0265314_1000228315 282

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01149

Fapy_DNA_glyco

Formamidopyrimidine-DNA glycosylase N-terminal domain

1

145

0.89

PF06831

H2TH

Formamidopyrimidine-DNA glycosylase H2TH domain

160

252

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6c4i-assembly1.cif.gz_m conformation of methylated ggq in the peptidyl transferase center during translation termination 0.9713 178 215
7ot5-assembly1.cif.gz_q cspa-70 cotranslational folding intermediate 1 0.9652 177 215
3sat-assembly1.cif.gz_A mutm slanted complex 6 with r112a mutation 0.8896 2 280
3sat-assembly1.cif.gz_A mutm slanted complex 6 with r112a mutation 0.8863 2 280
1nnj-assembly1.cif.gz_A crystal structure complex between the lactococcus lactis fpg and an abasic site containing dna 0.8857 3 281
ID Description Score Start End Superfamily
3sarA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9246 139 280 1.10.8.50
3sarA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9173 139 280 1.10.8.50
1kfvB01 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.8886 4 128 3.20.190.10
3j7aS01 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.8836 162 211 1.10.8.50
1q39A01 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.8747 11 127 3.20.190.10
ID Description Score Start End GO Terms
AF-A0A2V5UYX8-F1-model_v4 DNA-formamidopyrimidine glycosylase 0.9787 1 209 GO:0003684
GO:0006284
GO:0008270
GO:0019104
GO:0140078
AF-A0A290Q2E6-F1-model_v4 DNA-formamidopyrimidine glycosylase 0.978 1 281 GO:0003684
GO:0006284
GO:0008270
GO:0019104
GO:0140078
AF-A0A4Q3JR53-F1-model_v4 Fpg/Nei family DNA glycosylase 0.9774 77 281 GO:0003684
GO:0006284
GO:0008270
GO:0019104
GO:0140078
AF-A0A290Q2E6-F1-model_v4 DNA-formamidopyrimidine glycosylase 0.9744 1 281 GO:0003684
GO:0006284
GO:0008270
GO:0019104
GO:0140078
AF-A0A3B9PU45-F1-model_v4 DNA-formamidopyrimidine glycosylase (EC 3.2.2.23) 0.9716 1 181 GO:0003676
GO:0003906
GO:0006284
GO:0008270
GO:0019104

Feature Viewer

pLDDT pTM Quality
91.79 0.87 High
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Predicted Structure (AlphaFold2)

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