F134965

General Info

Members Datasets Scaffolds Average Seq Length
127 85 117 554

Family's Representative Sequence

Representative Sequence 3300032004|Ga0307414_10044569|Ga0307414_100445693
Length 594
Sequence MSALKKWSTACPDWQERIVKGQTLIPFAPLFHANAVEALDVFDSLIMVDAANSPTFGDVCRPWIKEFVAQIFGSYDDETGIRHITEYFMLISKKNGKSTTAAAIMLTALILNWRHDAEFIILSPTIEIAGNSFKPAAAMVRADPQLNDLFMVQDHIRTITHRTTGATLRVVAADSNTVGGKKAVGVLVDELWLFGKDAKADAMLMEATGGLASRPEGFIIYLTTQSDDPPAGVFKDKLQYARDVRDGKVDDPQFLPVIYEFPTPMLQSMQHMKPENFYVTNPNLTVANDPSKGGSVNVGYIERLWRQAQEQGPEKIRMFLAKHLNVEIGLNLRSDRWVGADHWEQAAKLPRVTIDYLITNCEVVAGGVDGGGLDDLLGAAMIGREKFTTEVVIPAHHDEETGELIPEHRMHVQRWVAWMHAWAHRSVLQRRKDIESKLRDMMKEGLVTLVEHPGQDAEQMAKMFAKVDKAGILFQIGFDPACIGGLLDALLQEQVEPEKMVKVNQGFRLAGSIKTAERKLWEGVLVHDGNLLGNWCVGNAKIVLRGNGVYITKAVSGTAKIDPLIALLNCVDIMQLNPEAMNDQFDVSQMVICG

Samples

Sample ID Description Type Environment
1 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
2 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
3 2582581311 Burkholderia sp. WP42 Isolate Rhizosphere
4 2600255283 Pseudomonas sp. NFR16 Isolate Rhizoplane
5 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
6 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
7 2881609920 Pantoea sp. ARC607 Isolate Rhizosphere
8 2939602548 Pantoea dispersa 1175 Isolate Rhizosphere
9 2978975091 Pantoea anthophila SORGH_AS 797 Isolate Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
14 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
15 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
16 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
17 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
18 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
19 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
20 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
21 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
24 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
25 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
26 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
27 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
28 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
29 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
30 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
31 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
32 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
33 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
34 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
35 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
36 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
37 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
38 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
39 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
40 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
41 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
42 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
43 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
44 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
45 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
46 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
47 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
48 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
49 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
50 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
51 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
52 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
53 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
54 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
55 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
56 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
57 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
58 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
59 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
60 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
61 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
62 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
63 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
64 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
65 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
66 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
67 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
68 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
69 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
70 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
71 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
72 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
73 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
74 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
75 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
76 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
77 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
78 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
79 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
80 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
81 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
85 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.91
Metatranscriptomes 0
Isolates 7.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.72
Nodule 2.36
Rhizoplane 2.36
Rhizosphere 82.68
Stem 0
Stem Tuber 0
Unclassified 7.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10140997 3300003322 Bacteria 1898
2 rootL2_10284149 3300003322 Bacteria 3687
3 Ga0065714_10064946 3300005288 Viruses 15028
4 Ga0065714_10075497 3300005288 Viruses 2839
5 Ga0068856_100027992 3300005614 Bacteria 5499
6 Ga0105244_10000335 3300009036 Viruses 44325
7 Ga0105244_10002921 3300009036 Bacteria 12620
8 Ga0163162_10000287 3300013306 Viruses 46077
9 Ga0163161_10000252 3300017792 Viruses 47324
10 Ga0163161_10000298 3300017792 Bacteria 43019
11 Ga0228710_1022468 3300022740 Bacteria 4842
12 Ga0209148_1004454 3300025254 Bacteria 3450
13 Ga0209675_1000396 3300025291 Bacteria 36199
14 Ga0209025_1020267 3300025294 Bacteria 3647
15 Ga0209564_1001092 3300025295 Bacteria 32280
16 Ga0207655_1000594 3300025728 Viruses 44329
17 Ga0207702_10024774 3300026078 Bacteria 4978
18 Ga0307412_10004676 3300031911 Bacteria 7638
19 Ga0307414_10000146 3300032004 Viruses 47740
20 Ga0307414_10044569 3300032004 Bacteria 3031
21 Ga0307411_10000031 3300032005 Viruses 45969
22 Ga0395899_0000306 3300037312 Bacteria 62997
23 Ga0395899_0000621 3300037312 Bacteria 36932
24 Ga0395899_0000750 3300037312 Bacteria 32183
25 Ga0395900_0001226 3300037418 Bacteria 31540
26 Ga0395900_0001451 3300037418 Bacteria 28281
27 Ga0395900_0002677 3300037418 Bacteria 19467
28 Ga0395900_0086529 3300037418 Bacteria 3221
29 Ga0395900_0175131 3300037418 Bacteria 2182
30 Ga0395898_0000652 3300037466 Bacteria 62997
31 Ga0395898_0000729 3300037466 Bacteria 57774
32 Ga0395898_0001386 3300037466 Bacteria 34680
33 Ga0395898_0001410 3300037466 Bacteria 34241
34 Ga0395898_0001491 3300037466 Bacteria 32596
35 Ga0395898_0002522 3300037466 Bacteria 21511
36 Ga0395905_0000385 3300037471 Bacteria 62998
37 Ga0395905_0001246 3300037471 Bacteria 31522
38 Ga0395905_0001335 3300037471 Bacteria 30045
39 Ga0395905_0115371 3300037471 Bacteria 2524
40 Ga0395901_0000281 3300038443 Bacteria 63103
41 Ga0395901_0000536 3300038443 Bacteria 43733
42 Ga0395901_0000655 3300038443 Bacteria 39890
43 Ga0395901_0000756 3300038443 Bacteria 36321
44 Ga0395901_0053473 3300038443 Bacteria 4195
45 Ga0439438_000917 3300041405 Viruses 13142
46 Ga0439466_0011825 3300041411 Viruses 3223
47 Ga0451798_0430951 3300041458 Bacteria 2289
48 Ga0451800_0591924 3300041459 Bacteria 6492
49 Ga0439452_000183 3300042010 Viruses 47120
50 Ga0450900_000001 3300042136 Viruses 46355
51 Ga0450903_000005 3300042138 Viruses 47970
52 Ga0439446_0000036 3300042156 Viruses 20948
53 Ga0439464_0000218 3300042439 Viruses 10349
54 Ga0453683_0047958 3300044673 Unclassified 2679
55 Ga0466966_0000151 3300044684 Bacteria 44355
56 Ga0451576_0001163 3300045051 Viruses 47438
57 Ga0495591_000206 3300046458 Bacteria 60027
58 Ga0495591_001273 3300046458 Bacteria 16104
59 Ga0495638_0001415 3300046460 Bacteria 21799
60 Ga0495650_0002423 3300046471 Bacteria 15151
61 Ga0495605_0000615 3300046474 Bacteria 27759
62 Ga0495584_0000145 3300046491 Bacteria 49520
63 Ga0495584_0002945 3300046491 Bacteria 9476
64 Ga0495584_0003964 3300046491 Bacteria 7993
65 Ga0495585_0002079 3300046492 Bacteria 14690
66 Ga0495585_0006224 3300046492 Bacteria 7436
67 Ga0495594_0000138 3300046499 Bacteria 34577
68 Ga0495607_0000200 3300046501 Bacteria 63710
69 Ga0495606_0000635 3300046507 Bacteria 55212
70 Ga0495610_0000373 3300046512 Viruses 46409
71 Ga0495610_0003695 3300046512 Bacteria 11734
72 Ga0495616_0000063 3300046513 Bacteria 91100
73 Ga0495616_0019412 3300046513 Bacteria 3710
74 Ga0495628_0077788 3300046516 Bacteria 2580
75 Ga0495631_0006966 3300046518 Bacteria 5788
76 Ga0495632_0000032 3300046519 Bacteria 164561
77 Ga0495632_0000806 3300046519 Bacteria 27759
78 Ga0495637_0000280 3300046520 Viruses 40039
79 Ga0495637_0001030 3300046520 Bacteria 17479
80 Ga0495637_0005102 3300046520 Bacteria 6734
81 Ga0495643_0005044 3300046522 Bacteria 9042
82 Ga0495644_0000035 3300046523 Bacteria 65178
83 Ga0495642_0000146 3300046528 Bacteria 41101
84 Ga0495621_0000317 3300046539 Bacteria 11669
85 Ga0495633_0001889 3300046558 Bacteria 15287
86 Ga0495625_0003754 3300046660 Bacteria 14758
87 Ga0495625_0017016 3300046660 Bacteria 5701
88 Ga0495625_0043373 3300046660 Bacteria 3262
89 Ga0495661_0000265 3300046665 Bacteria 60027
90 Ga0495661_0000270 3300046665 Bacteria 59713
91 Ga0495661_0000496 3300046665 Bacteria 40946
92 Ga0495588_0004162 3300046674 Bacteria 6376
93 Ga0495669_0000319 3300046684 Bacteria 26471
94 Ga0495589_0000378 3300046794 Bacteria 34065
95 Ga0495589_0069252 3300046794 Bacteria 1726
96 Ga0495660_0000453 3300046810 Bacteria 34136
97 Ga0495680_0010175 3300047322 Bacteria 8405
98 Ga0495683_0000187 3300047323 Bacteria 60027
99 Ga0495683_0002267 3300047323 Bacteria 11734
100 Ga0495683_0002463 3300047323 Bacteria 11175
101 Ga0495673_0000462 3300047469 Bacteria 44178
102 Ga0495686_0010112 3300047472 Bacteria 6734
103 Ga0495602_0026656 3300048088 Bacteria 5571
104 Ga0495615_0000295 3300048090 Bacteria 8617
105 Ga0495626_0000262 3300048091 Bacteria 60027
106 Ga0496119_0000782 3300048922 Bacteria 42502
107 Ga0496120_0000669 3300048923 Bacteria 50381
108 Ga0496121_0001100 3300048924 Viruses 47671
109 Ga0496124_0001095 3300048927 Bacteria 42596
110 Ga0496124_0052792 3300048927 Bacteria 3452
111 Ga0495678_000464 3300049459 Bacteria 40216
112 Ga0501032_0030013 3300049569 Bacteria 3730
113 Ga0501038_0001335 3300049574 Bacteria 22431
114 Ga0501044_0001380 3300049823 Bacteria 28499
115 Ga0501044_0034958 3300049823 Bacteria 5265
116 Ga0500642_0006562 3300053130 Bacteria 3842
117 Ga0500586_002413 3300053145 Viruses 4212

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046516 Ga0495628_0077788 Ga0495628_0077788_1184_2545 450
2 iso_pu_bacteria 2881609920 2881613018 469
3 3300047322 Ga0495680_0010175 Ga0495680_0010175_6873_8378 492
4 3300046558 Ga0495633_0001889 Ga0495633_0001889_12242_13918 502
5 3300046660 Ga0495625_0043373 Ga0495625_0043373_404_2092 520
6 3300049459 Ga0495678_000464 Ga0495678_000464_35154_36833 520
7 3300005288 Ga0065714_10075497 Ga0065714_100754972 531
8 3300013306 Ga0163162_10000287 Ga0163162_1000028738 531
9 3300042138 Ga0450903_000005 Ga0450903_000005_17915_19585 531
10 3300046460 Ga0495638_0001415 Ga0495638_0001415_1373_3052 531
11 3300048924 Ga0496121_0001100 Ga0496121_0001100_30849_32519 531
12 3300044673 Ga0453683_0047958 Ga0453683_0047958_525_2153 533
13 3300037466 Ga0395898_0001410 Ga0395898_0001410_3045_4718 535
14 3300025295 Ga0209564_1001092 Ga0209564_100109251 536
15 3300041459 Ga0451800_0591924 Ga0451800_0591924_4201_5883 536
16 3300046492 Ga0495585_0006224 Ga0495585_0006224_357_1982 537
17 3300046513 Ga0495616_0000063 Ga0495616_0000063_41114_42739 537
18 3300046513 Ga0495616_0000063 Ga0495616_0000063_86606_88231 537
19 3300046794 Ga0495589_0069252 Ga0495589_0069252_47_1672 537
20 3300049823 Ga0501044_0034958 Ga0501044_0034958_351_2006 538
21 3300048088 Ga0495602_0026656 Ga0495602_0026656_3712_5451 540
22 3300025294 Ga0209025_1020267 Ga0209025_10202672 544
23 iso_pu_bacteria 2582581311 2585292298 545
24 iso_pu_bacteria 2816332253 2817260919 545
25 iso_pu_bacteria 2600255283 2601626850 546
26 3300017792 Ga0163161_10000298 Ga0163161_1000029874 547
27 iso_pu_bacteria 2939602548 2939606068 547
28 iso_pu_bacteria 2978975091 2978979166 547
29 iso_pu_bacteria 2512047030 2512349029 548
30 3300005614 Ga0068856_100027992 Ga0068856_1000279922 549
31 3300025254 Ga0209148_1004454 Ga0209148_10044542 549
32 3300026078 Ga0207702_10024774 Ga0207702_100247742 549
33 3300046520 Ga0495637_0001030 Ga0495637_0001030_980_2644 549
34 3300046539 Ga0495621_0000317 Ga0495621_0000317_375_2057 549
35 3300048090 Ga0495615_0000295 Ga0495615_0000295_355_2019 549
36 3300049569 Ga0501032_0030013 Ga0501032_0030013_60_1715 549
37 3300049823 Ga0501044_0001380 Ga0501044_0001380_8273_9928 549
38 iso_pu_bacteria 2513237138 2513870958 549
39 3300003322 rootL2_10284149 rootL2_102841492 550
40 3300025291 Ga0209675_1000396 Ga0209675_100039641 550
41 3300038443 Ga0395901_0000655 Ga0395901_0000655_37633_39306 550
42 3300046458 Ga0495591_000206 Ga0495591_000206_19869_21533 550
43 3300046458 Ga0495591_001273 Ga0495591_001273_1921_3603 550
44 3300046499 Ga0495594_0000138 Ga0495594_0000138_13769_15451 550
45 3300046518 Ga0495631_0006966 Ga0495631_0006966_2500_4164 550
46 3300046523 Ga0495644_0000035 Ga0495644_0000035_31908_33572 550
47 3300046528 Ga0495642_0000146 Ga0495642_0000146_27671_29335 550
48 3300046660 Ga0495625_0017016 Ga0495625_0017016_3748_5430 550
49 3300046665 Ga0495661_0000265 Ga0495661_0000265_28850_30514 550
50 3300046665 Ga0495661_0000496 Ga0495661_0000496_22797_24470 550
51 3300046794 Ga0495589_0000378 Ga0495589_0000378_16776_18458 550
52 3300047323 Ga0495683_0000187 Ga0495683_0000187_29514_31178 550
53 3300047469 Ga0495673_0000462 Ga0495673_0000462_22482_24164 550
54 3300048091 Ga0495626_0000262 Ga0495626_0000262_56105_57769 550
55 3300049574 Ga0501038_0001335 Ga0501038_0001335_4364_6022 550
56 3300005288 Ga0065714_10064946 Ga0065714_1006494620 551
57 3300009036 Ga0105244_10000335 Ga0105244_1000033566 551
58 3300009036 Ga0105244_10002921 Ga0105244_1000292112 551
59 3300017792 Ga0163161_10000252 Ga0163161_1000025275 551
60 3300025728 Ga0207655_1000594 Ga0207655_100059418 551
61 3300032004 Ga0307414_10000146 Ga0307414_1000014681 551
62 3300032004 Ga0307414_10044569 Ga0307414_100445693 551
63 3300032005 Ga0307411_10000031 Ga0307411_1000003139 551
64 3300041405 Ga0439438_000917 Ga0439438_000917_9109_10782 551
65 3300041411 Ga0439466_0011825 Ga0439466_0011825_1045_2718 551
66 3300042010 Ga0439452_000183 Ga0439452_000183_16517_18187 551
67 3300042136 Ga0450900_000001 Ga0450900_000001_44617_46293 551
68 3300042156 Ga0439446_0000036 Ga0439446_0000036_17198_18871 551
69 3300042439 Ga0439464_0000218 Ga0439464_0000218_3107_4783 551
70 3300045051 Ga0451576_0001163 Ga0451576_0001163_44247_45914 551
71 3300046512 Ga0495610_0000373 Ga0495610_0000373_37211_38878 551
72 3300046519 Ga0495632_0000032 Ga0495632_0000032_107771_109453 551
73 3300046520 Ga0495637_0000280 Ga0495637_0000280_4219_5892 551
74 3300048922 Ga0496119_0000782 Ga0496119_0000782_14188_15849 551
75 3300048923 Ga0496120_0000669 Ga0496120_0000669_22067_23728 551
76 3300053145 Ga0500586_002413 Ga0500586_002413_543_2216 551
77 3300031911 Ga0307412_10004676 Ga0307412_100046763 552
78 3300037312 Ga0395899_0000306 Ga0395899_0000306_34803_36488 552
79 3300037418 Ga0395900_0002677 Ga0395900_0002677_16919_18604 552
80 3300037466 Ga0395898_0000652 Ga0395898_0000652_25291_26976 552
81 3300037471 Ga0395905_0000385 Ga0395905_0000385_52463_54148 552
82 3300037471 Ga0395905_0115371 Ga0395905_0115371_238_1923 552
83 3300038443 Ga0395901_0000281 Ga0395901_0000281_44554_46239 552
84 3300038443 Ga0395901_0053473 Ga0395901_0053473_544_2229 552
85 3300044684 Ga0466966_0000151 Ga0466966_0000151_21321_23006 552
86 3300046665 Ga0495661_0000270 Ga0495661_0000270_31068_32753 552
87 3300046684 Ga0495669_0000319 Ga0495669_0000319_22997_24682 552
88 3300048927 Ga0496124_0052792 Ga0496124_0052792_472_2175 552
89 iso_pu_bacteria 2808606395 2809035201 552
90 3300037418 Ga0395900_0086529 Ga0395900_0086529_1348_3030 553
91 3300037466 Ga0395898_0001386 Ga0395898_0001386_32613_34355 553
92 3300037466 Ga0395898_0002522 Ga0395898_0002522_564_2246 553
93 3300041458 Ga0451798_0430951 Ga0451798_0430951_557_2275 553
94 3300046491 Ga0495584_0000145 Ga0495584_0000145_14471_16144 553
95 3300046491 Ga0495584_0003964 Ga0495584_0003964_5113_6789 553
96 3300046492 Ga0495585_0002079 Ga0495585_0002079_511_2187 553
97 3300046507 Ga0495606_0000635 Ga0495606_0000635_29178_30851 553
98 3300046810 Ga0495660_0000453 Ga0495660_0000453_28478_30154 553
99 3300037312 Ga0395899_0000621 Ga0395899_0000621_23284_24960 554
100 3300037418 Ga0395900_0001451 Ga0395900_0001451_15731_17407 554
101 3300037466 Ga0395898_0001491 Ga0395898_0001491_17779_19455 554
102 3300037471 Ga0395905_0001335 Ga0395905_0001335_17923_19599 554
103 3300038443 Ga0395901_0000536 Ga0395901_0000536_20425_22101 554
104 3300046471 Ga0495650_0002423 Ga0495650_0002423_10422_12095 554
105 3300046674 Ga0495588_0004162 Ga0495588_0004162_2618_4294 554
106 3300047323 Ga0495683_0002463 Ga0495683_0002463_8947_10662 554
107 3300053130 Ga0500642_0006562 Ga0500642_0006562_1653_3347 554
108 3300037312 Ga0395899_0000750 Ga0395899_0000750_522_2207 555
109 3300037418 Ga0395900_0001226 Ga0395900_0001226_29332_31017 555
110 3300037466 Ga0395898_0000729 Ga0395898_0000729_26758_28443 555
111 3300037471 Ga0395905_0001246 Ga0395905_0001246_506_2191 555
112 3300038443 Ga0395901_0000756 Ga0395901_0000756_2154_3839 555
113 3300048927 Ga0496124_0001095 Ga0496124_0001095_26130_27839 556
114 3300037418 Ga0395900_0175131 Ga0395900_0175131_141_1829 557
115 3300046474 Ga0495605_0000615 Ga0495605_0000615_4675_6360 561
116 3300046491 Ga0495584_0002945 Ga0495584_0002945_3117_4802 561
117 3300046501 Ga0495607_0000200 Ga0495607_0000200_34994_36679 561
118 3300046512 Ga0495610_0003695 Ga0495610_0003695_4675_6360 561
119 3300046513 Ga0495616_0019412 Ga0495616_0019412_375_2060 561
120 3300046519 Ga0495632_0000806 Ga0495632_0000806_4675_6360 561
121 3300046520 Ga0495637_0005102 Ga0495637_0005102_4675_6360 561
122 3300046522 Ga0495643_0005044 Ga0495643_0005044_4675_6360 561
123 3300046660 Ga0495625_0003754 Ga0495625_0003754_375_2060 561
124 3300047323 Ga0495683_0002267 Ga0495683_0002267_5375_7060 561
125 3300047472 Ga0495686_0010112 Ga0495686_0010112_4675_6360 561
126 3300022740 Ga0228710_1022468 Ga0228710_10224684 562
127 3300003322 rootL2_10140997 rootL2_101409971 565

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20441

TerL_nuclease

Terminase large subunit, endonuclease domain

423

577

0.82

PF03354

TerL_ATPase

Terminase large subunit, ATPase domain

62

243

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5m1f-assembly1.cif.gz_A crystal structure of the large terminase nuclease from thermophilic phage g20c 0.7405 349 535
5m1k-assembly2.cif.gz_B crystal structure of the large terminase nuclease from thermophilic phage g20c with bound magnesium 0.7257 349 537
5tge-assembly1.cif.gz_A thermus phage p74-26 large terminase nuclease domain 0.7026 349 535
5m1o-assembly2.cif.gz_B crystal structure of the large terminase nuclease from thermophilic phage g20c with bound cobalt 0.6983 349 537
5m1q-assembly1.cif.gz_A crystal structure of the large terminase nuclease from thermophilic phage g20c with bound zinc 0.6868 349 535
ID Description Score Start End Superfamily
af_Q2FWT4_43_253_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8764 27 240 3.40.50.300
af_Q2FYC6_9_256_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8654 26 241 3.40.50.300
af_Q2FWT4_43_253_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.857 27 240 3.40.50.300
af_Q2FYC6_323_537_3.30.420.240 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.836 329 535 3.30.420.240
af_Q2FYC6_323_537_3.30.420.240 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.7718 329 535 3.30.420.240
ID Description Score Start End GO Terms
AF-A0A376LQ42-F1-model_v4 Putative phage terminase, large subunit 0.9904 3 158
AF-A0A826MLP5-F1-model_v4 deleted 0.9842 2 113
AF-L9PNI6-F1-model_v4 deleted 0.9841 2 297
AF-A0A1H7Z873-F1-model_v4 Phage Terminase 0.9821 3 315
AF-A0A0K9T3U8-F1-model_v4 deleted 0.9819 3 236

Feature Viewer

pLDDT pTM Quality
87.63 0.73 High
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Predicted Structure (AlphaFold2)

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