F133751

General Info

Members Datasets Scaffolds Average Seq Length
127 107 106 1030

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10003062|Ga0081539_1000306212
Length 1178
Sequence MKSSRELPSSEFLAESIFVIRDQNVILDTDLAKLYNVGVKVLNRRVAPYCDSSPDLCRFQLSAAEKVELAQQSFRFRRLRSSAVETYAFTEFGALVAATSLNSEVALKMGVELVRSFIGTYGDAPKSYNCSDKFSAFRSLIKSRARTTRMMATQIDIPIQPVDNPIICNPYDEPNDHWFYDESGQATRPGHRRPAGYWYKTEKVGTGQRGLFLNEQLDLLELVNLVREDVKRWREAGYRGVSSVTRDLLLHWNSKERGRRLFFCQREAVETIIYLCELRLAGKSSRTKFQKFSLDDEAIGSLLRGEKPTFHIAADQNYPRLVDIPSDPELLPLRRLGCKMATGSGKTVVMSMLIAWAFCNRAQNPQSKEFANAVLICCPNLTVKERLQVLRPENPKNYYAEFDIVPVKYRPLLQTGKVLIENWHSLAEESEHKEGDSTYAVVNKGPETAETLARRVLGDLYDRMPIMVLNDEGHHCWRPASTNPEGLTTEEKKLLEDEKQEATVWIEGLDRLNNALGLERGVSFCVDLSATPFYIGGSGHPEGRPFPWLVSDFGLVDAIESGIVKIPRLPVSDTTGRPDPKYFKLWEWIKDGLEPAQFMAGKGKKPRPDVVYKEAQPALVQIAGQWAERFKYIQDAKPGQAHIPPVLIVVCDNTDIAQIFFENLSGERTEELVTEADVEAVLGENGNSSKTMTIFGPSKILAEFTNTATLKRTIRIDTKLLAEAESDDPKKKKSDLAEELRRVVATVGKVGEPGEHVRCVVSVSMLTEGWDANNVTHILGVRAFGSQLLCEQVIGRGLRRINYTPDTETGMLPEEYVDVYGIPFSVIPFKGRPSTKQEPDDKPLQYVRSLPERAGMEIRFPIVEGYTFALKKNLIRCNVDGMESLLIEPNREPTATFLVPQVGYKTGSQAQSGGQFGTVVQDRGLYYKQNHIQTIEFEITRLVLEQLMGERNSVSEQKKKVLRLQSRHQLFPQVHRFVHQYIERRVDFQGAHPSELGLAKYVERIVERLRDGIEPDEEQGEAPLLPVLYRYQPIASTEKVGFMTKRPCFATQRSHINQVVADTQTWESSAAFRLEQSKLVKFYARNDHLGFMIPYEYQGLDHKYEPDYLVRLANDVTLILEIKGFEDNQDKAKHDAAKRWKSAVNNWGQLGVWDFHVCRNPQLLEKELEYLTMKTAGN

Samples

Sample ID Description Type Environment
1 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
2 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
3 2516143018 Ensifer sp. BR816 Isolate Nodule
4 2643221585 Pelomonas sp. Root662 Isolate Unclassified
5 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
6 2643221656 Pelomonas sp. Root405 Isolate Unclassified
7 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
8 2738543012 Acidovorax sp. CF301 Isolate Unclassified
9 2842304105 Rhizobium leguminosarum SEMIA 499 Isolate Nodule
10 2852612431 Pseudomonas sp. SJZ073 Isolate Rhizosphere
11 2852667396 Pseudomonas sp. JAI120 Isolate Rhizosphere
12 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
13 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
14 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
15 2933570622 Rhizobium leguminosarum SEMIA 409 Isolate Nodule
16 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
17 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
18 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
19 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
22 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
23 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
24 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
25 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
26 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
27 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
38 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
39 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
42 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
44 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
46 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
49 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
50 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
51 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
52 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
53 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
54 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
55 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
56 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
57 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
58 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
61 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
62 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
63 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
64 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
65 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
66 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
77 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
78 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
79 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
80 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
81 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
82 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
83 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
84 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
85 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
88 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
89 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
90 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
98 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
99 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
104 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
105 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
106 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
107 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.46
Metatranscriptomes 0
Isolates 16.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.6
Nodule 4.72
Rhizoplane 0
Rhizosphere 72.44
Stem 0
Stem Tuber 0
Unclassified 10.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25165J46597_1001517 3300003214 Bacteria 11744
2 rootH1_10040790 3300003323 Bacteria 19554
3 Ga0055527_1000138 3300003760 Bacteria 51833
4 Ga0055535_1000118 3300003761 Bacteria 85373
5 Ga0055542_1000064 3300003762 Bacteria 159853
6 Ga0055542_1000720 3300003762 Bacteria 25897
7 Ga0055529_1000072 3300003763 Bacteria 159853
8 Ga0070691_10000560 3300005341 Bacteria 14136
9 Ga0070669_100001134 3300005353 Bacteria 19451
10 Ga0070709_10003833 3300005434 Bacteria 8094
11 Ga0070706_100020617 3300005467 Bacteria 6074
12 Ga0070697_100000272 3300005536 Bacteria 42107
13 Ga0081539_10003062 3300005985 Bacteria 21565
14 Ga0070717_10000207 3300006028 Bacteria 41225
15 Ga0070712_100007979 3300006175 Bacteria 6638
16 Ga0075434_100000029 3300006871 Bacteria 64965
17 Ga0114129_10000520 3300009147 Bacteria 47027
18 Ga0105239_10094007 3300010375 Bacteria 3311
19 Ga0157369_10004093 3300013105 Bacteria 17270
20 Ga0182007_10004989 3300015262 Bacteria 5903
21 Ga0213875_10001108 3300021388 Bacteria 18703
22 Ga0209672_100008 3300025228 Bacteria 946876
23 Ga0209258_100004 3300025242 Bacteria 1376422
24 Ga0209258_100008 3300025242 Bacteria 1009355
25 Ga0207425_1001509 3300025245 Bacteria 9610
26 Ga0209148_1000038 3300025254 Bacteria 493744
27 Ga0209148_1000041 3300025254 Bacteria 469323
28 Ga0209233_1000050 3300025261 Bacteria 450736
29 Ga0209455_1000007 3300025272 Bacteria 1157983
30 Ga0209455_1000068 3300025272 Bacteria 310024
31 Ga0209025_1006056 3300025294 Bacteria 9566
32 Ga0207699_10002336 3300025906 Bacteria 8954
33 Ga0207681_10001588 3300025923 Bacteria 14631
34 Ga0265337_1001188 3300028556 Bacteria 13246
35 Ga0265326_10000131 3300028558 Bacteria 38598
36 Ga0265319_1000146 3300028563 Bacteria 52336
37 Ga0265318_10000355 3300028577 Bacteria 36365
38 Ga0265336_10000001 3300028666 Bacteria 916179
39 Ga0265338_10000532 3300028800 Bacteria 66760
40 Ga0265338_10005774 3300028800 Bacteria 16002
41 Ga0265324_10001734 3300029957 Bacteria 11996
42 Ga0265330_10000899 3300031235 Bacteria 18402
43 Ga0265340_10000002 3300031247 Bacteria 711693
44 Ga0265339_10011919 3300031249 Bacteria 5329
45 Ga0265327_10006469 3300031251 Bacteria 9357
46 Ga0265316_10005517 3300031344 Bacteria 12275
47 Ga0307514_10011186 3300031649 Bacteria 7468
48 Ga0265342_10014673 3300031712 Bacteria 5192
49 Ga0316578_10005264 3300031728 Bacteria 6248
50 Ga0316577_10000487 3300031733 Bacteria 15663
51 Ga0316580_10001057 3300032139 Bacteria 6920
52 Ga0316574_0018559 3300035398 Bacteria 4090
53 Ga0316582_0000445 3300036647 Bacteria 15210
54 Ga0316584_0000787 3300036712 Bacteria 17808
55 Ga0395898_0005312 3300037466 Bacteria 13934
56 Ga0436364_0379996 3300037853 Bacteria 18896
57 Ga0436364_0595576 3300037853 Bacteria 25629
58 Ga0395901_0002778 3300038443 Bacteria 17649
59 Ga0436363_1451331 3300039450 Bacteria 4323
60 Ga0451577_0007860 3300042876 Bacteria 10431
61 Ga0451577_0008180 3300042876 Bacteria 10195
62 Ga0453684_0000695 3300044712 Bacteria 119602
63 Ga0453684_0003188 3300044712 Bacteria 37593
64 Ga0453684_0008284 3300044712 Bacteria 18727
65 Ga0453684_0013152 3300044712 Bacteria 13496
66 Ga0453684_0017430 3300044712 Bacteria 11125
67 Ga0453684_0017581 3300044712 Bacteria 11059
68 Ga0466959_0008712 3300045049 Bacteria 7183
69 Ga0451576_0000208 3300045051 Bacteria 147509
70 Ga0495584_0001280 3300046491 Bacteria 15302
71 Ga0495584_0010124 3300046491 Bacteria 4843
72 Ga0495596_0001103 3300046500 Bacteria 15983
73 Ga0495583_0003533 3300046506 Bacteria 11811
74 Ga0495583_0010282 3300046506 Bacteria 5475
75 Ga0495620_0004097 3300046515 Bacteria 8269
76 Ga0495628_0039954 3300046516 Bacteria 3751
77 Ga0495643_0000273 3300046522 Bacteria 73816
78 Ga0495652_0003893 3300046529 Bacteria 14529
79 Ga0495654_0000360 3300046530 Bacteria 39495
80 Ga0495586_0000274 3300046535 Bacteria 33092
81 Ga0495668_0003476 3300046616 Bacteria 11758
82 Ga0495668_0004482 3300046616 Bacteria 9892
83 Ga0495674_0002974 3300047319 Bacteria 16492
84 Ga0495673_0001656 3300047469 Bacteria 17180
85 Ga0495673_0001874 3300047469 Bacteria 15774
86 Ga0495686_0000163 3300047472 Bacteria 126514
87 Ga0495602_0002916 3300048088 Bacteria 17538
88 Ga0501032_0000721 3300049569 Bacteria 26964
89 Ga0501033_0015797 3300049570 Bacteria 5721
90 Ga0501034_0030511 3300049571 Bacteria 5480
91 Ga0501034_0040702 3300049571 Bacteria 4703
92 Ga0501038_0001337 3300049574 Bacteria 22423
93 Ga0501038_0028927 3300049574 Bacteria 4918
94 Ga0501039_0001217 3300049575 Bacteria 18908
95 Ga0501043_0008400 3300049579 Bacteria 8132
96 Ga0501043_0049342 3300049579 Bacteria 3309
97 Ga0501047_0024566 3300049581 Bacteria 5784
98 Ga0501070_0018174 3300049586 Bacteria 5897
99 Ga0501073_0011048 3300049589 Bacteria 6605
100 Ga0501080_0000066 3300049742 Bacteria 68980
101 Ga0501035_0014434 3300049822 Bacteria 7290
102 Ga0501035_0022948 3300049822 Bacteria 5728
103 Ga0501044_0030087 3300049823 Bacteria 5722
104 nmdc:mga05p37_70_c1 3300050507 Bacteria 89733
105 nmdc:mga0n895_45_c1 3300050512 Bacteria 74072
106 Ga0501082_0066870 3300060353 Bacteria 3095

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037853 Ga0436364_0595576 Ga0436364_0595576_11758_14814 878
2 3300031235 Ga0265330_10000899 Ga0265330_1000089914 879
3 3300031344 Ga0265316_10005517 Ga0265316_100055175 879
4 3300031712 Ga0265342_10014673 Ga0265342_100146732 879
5 3300044712 Ga0453684_0017430 Ga0453684_0017430_239_3304 883
6 3300028800 Ga0265338_10005774 Ga0265338_100057749 892
7 3300044712 Ga0453684_0008284 Ga0453684_0008284_5705_8857 894
8 3300047472 Ga0495686_0000163 Ga0495686_0000163_58273_61419 894
9 3300047469 Ga0495673_0001874 Ga0495673_0001874_9325_12474 895
10 3300003323 rootH1_10040790 rootH1_100407907 896
11 3300037466 Ga0395898_0005312 Ga0395898_0005312_7296_10448 896
12 3300038443 Ga0395901_0002778 Ga0395901_0002778_5756_8908 896
13 3300046506 Ga0495583_0003533 Ga0495583_0003533_4297_7458 898
14 3300046491 Ga0495584_0001280 Ga0495584_0001280_7341_10502 901
15 3300046616 Ga0495668_0004482 Ga0495668_0004482_4730_7891 901
16 3300005536 Ga0070697_100000272 Ga0070697_10000027210 903
17 3300045049 Ga0466959_0008712 Ga0466959_0008712_761_3913 903
18 3300003762 Ga0055542_1000720 Ga0055542_10007202 904
19 3300025254 Ga0209148_1000038 Ga0209148_1000038380 904
20 3300025272 Ga0209455_1000068 Ga0209455_100006846 904
21 3300042876 Ga0451577_0007860 Ga0451577_0007860_3687_6779 905
22 3300044712 Ga0453684_0013152 Ga0453684_0013152_4498_7590 905
23 3300047469 Ga0495673_0001656 Ga0495673_0001656_7411_10563 906
24 3300025245 Ga0207425_1001509 Ga0207425_10015093 907
25 3300025294 Ga0209025_1006056 Ga0209025_10060565 907
26 3300031649 Ga0307514_10011186 Ga0307514_100111865 907
27 3300039450 Ga0436363_1451331 Ga0436363_1451331_454_3573 907
28 iso_pu_bacteria 2643221585 2643934507 907
29 iso_pu_bacteria 2643221656 2644315994 907
30 iso_pu_bacteria 2738543012 2739242348 907
31 3300013105 Ga0157369_10004093 Ga0157369_100040936 908
32 3300046491 Ga0495584_0010124 Ga0495584_0010124_823_3987 909
33 3300046500 Ga0495596_0001103 Ga0495596_0001103_5043_8204 909
34 3300046616 Ga0495668_0003476 Ga0495668_0003476_3054_6215 909
35 3300049742 Ga0501080_0000066 Ga0501080_0000066_26410_29556 912
36 3300028563 Ga0265319_1000146 Ga0265319_10001464 914
37 iso_pu_bacteria 2516143018 2516210558 914
38 iso_pu_bacteria 2970489779 2970495061 914
39 iso_pu_bacteria 3005474847 3005483099 914
40 iso_pu_bacteria 8054002106 8054002753 914
41 iso_pu_bacteria 2842304105 2842308833 916
42 iso_pu_bacteria 2933570622 2933575279 916
43 iso_pu_bacteria 650716007 650842563 916
44 3300046522 Ga0495643_0000273 Ga0495643_0000273_56909_60046 917
45 3300046530 Ga0495654_0000360 Ga0495654_0000360_3510_6647 917
46 iso_pu_bacteria 2852612431 2852612759 917
47 iso_pu_bacteria 2852667396 2852669506 917
48 3300005353 Ga0070669_100001134 Ga0070669_10000113410 918
49 3300025923 Ga0207681_10001588 Ga0207681_100015882 918
50 3300045051 Ga0451576_0000208 Ga0451576_0000208_113452_116553 918
51 3300005985 Ga0081539_10003062 Ga0081539_1000306212 921
52 iso_pu_bacteria 2883577096 2883578636 925
53 iso_pu_bacteria 2989349275 2989352136 926
54 3300031728 Ga0316578_10005264 Ga0316578_100052642 930
55 3300031733 Ga0316577_10000487 Ga0316577_100004878 930
56 3300032139 Ga0316580_10001057 Ga0316580_100010573 930
57 3300035398 Ga0316574_0018559 Ga0316574_0018559_46_3213 930
58 3300036647 Ga0316582_0000445 Ga0316582_0000445_758_3925 930
59 3300036712 Ga0316584_0000787 Ga0316584_0000787_571_3738 930
60 3300005467 Ga0070706_100020617 Ga0070706_1000206172 951
61 3300046535 Ga0495586_0000274 Ga0495586_0000274_16870_19878 953
62 3300009147 Ga0114129_10000520 Ga0114129_1000052019 954
63 3300050507 nmdc:mga05p37_70_c1 nmdc:mga05p37_70_c1_69014_72007 954
64 iso_pu_bacteria 2643221624 2644137004 959
65 3300028556 Ga0265337_1001188 Ga0265337_10011884 961
66 3300028558 Ga0265326_10000131 Ga0265326_100001312 961
67 3300028577 Ga0265318_10000355 Ga0265318_100003552 961
68 3300028666 Ga0265336_10000001 Ga0265336_10000001246 961
69 3300028800 Ga0265338_10000532 Ga0265338_1000053224 961
70 3300029957 Ga0265324_10001734 Ga0265324_100017343 961
71 3300031247 Ga0265340_10000002 Ga0265340_10000002635 961
72 iso_pu_bacteria 8046352972 8046354270 961
73 iso_pu_bacteria 2920107658 2920112230 963
74 3300010375 Ga0105239_10094007 Ga0105239_100940071 964
75 3300049569 Ga0501032_0000721 Ga0501032_0000721_20572_23640 964
76 3300049574 Ga0501038_0001337 Ga0501038_0001337_17049_20117 964
77 3300049575 Ga0501039_0001217 Ga0501039_0001217_2295_5363 964
78 3300049579 Ga0501043_0008400 Ga0501043_0008400_1449_4517 964
79 iso_pu_bacteria 2687453257 2688068625 964
80 iso_pu_bacteria 2889415604 2889418511 965
81 3300042876 Ga0451577_0008180 Ga0451577_0008180_285_3620 967
82 3300044712 Ga0453684_0017581 Ga0453684_0017581_5111_8446 967
83 iso_pu_bacteria 2513237351 2514590699 970
84 3300006028 Ga0070717_10000207 Ga0070717_1000020736 971
85 3300005434 Ga0070709_10003833 Ga0070709_100038331 979
86 3300006871 Ga0075434_100000029 Ga0075434_10000002917 979
87 3300025906 Ga0207699_10002336 Ga0207699_100023366 979
88 3300031249 Ga0265339_10011919 Ga0265339_100119192 979
89 3300050512 nmdc:mga0n895_45_c1 nmdc:mga0n895_45_c1_16284_19310 979
90 3300044712 Ga0453684_0003188 Ga0453684_0003188_12884_15967 980
91 3300044712 Ga0453684_0000695 Ga0453684_0000695_27001_30009 981
92 3300006175 Ga0070712_100007979 Ga0070712_1000079795 985
93 3300031251 Ga0265327_10006469 Ga0265327_100064696 989
94 3300021388 Ga0213875_10001108 Ga0213875_100011084 996
95 3300037853 Ga0436364_0379996 Ga0436364_0379996_2803_5805 996
96 3300049589 Ga0501073_0011048 Ga0501073_0011048_2598_5663 996
97 iso_pu_bacteria 2511231221 2512033876 996
98 3300049822 Ga0501035_0014434 Ga0501035_0014434_2733_5810 1004
99 3300060353 Ga0501082_0066870 Ga0501082_0066870_21_3083 1004
100 3300046515 Ga0495620_0004097 Ga0495620_0004097_4318_7362 1006
101 3300005341 Ga0070691_10000560 Ga0070691_100005609 1008
102 3300049570 Ga0501033_0015797 Ga0501033_0015797_1753_4806 1011
103 3300049571 Ga0501034_0030511 Ga0501034_0030511_917_3970 1011
104 3300049574 Ga0501038_0028927 Ga0501038_0028927_1753_4806 1011
105 3300049579 Ga0501043_0049342 Ga0501043_0049342_67_3120 1011
106 3300049581 Ga0501047_0024566 Ga0501047_0024566_409_3462 1011
107 3300049586 Ga0501070_0018174 Ga0501070_0018174_1928_4981 1011
108 3300049822 Ga0501035_0022948 Ga0501035_0022948_2357_5410 1011
109 3300049823 Ga0501044_0030087 Ga0501044_0030087_1753_4806 1011
110 3300049571 Ga0501034_0040702 Ga0501034_0040702_242_3313 1014
111 3300046516 Ga0495628_0039954 Ga0495628_0039954_393_3455 1020
112 3300046529 Ga0495652_0003893 Ga0495652_0003893_10160_13222 1020
113 3300047319 Ga0495674_0002974 Ga0495674_0002974_10232_13294 1020
114 3300048088 Ga0495602_0002916 Ga0495602_0002916_4245_7307 1020
115 3300003214 JGI25165J46597_1001517 JGI25165J46597_10015175 1021
116 3300003760 Ga0055527_1000138 Ga0055527_100013848 1021
117 3300003761 Ga0055535_1000118 Ga0055535_10001182 1021
118 3300003762 Ga0055542_1000064 Ga0055542_1000064138 1021
119 3300003763 Ga0055529_1000072 Ga0055529_10000722 1021
120 3300015262 Ga0182007_10004989 Ga0182007_100049894 1021
121 3300025228 Ga0209672_100008 Ga0209672_100008269 1021
122 3300025242 Ga0209258_100004 Ga0209258_100004921 1021
123 3300025242 Ga0209258_100008 Ga0209258_100008546 1021
124 3300025254 Ga0209148_1000041 Ga0209148_100004148 1021
125 3300025261 Ga0209233_1000050 Ga0209233_1000050405 1021
126 3300025272 Ga0209455_1000007 Ga0209455_1000007666 1021
127 3300046506 Ga0495583_0010282 Ga0495583_0010282_125_3190 1021

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10543

ORF6N

ORF6N domain

15

100

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
7o4k-assembly1.cif.gz_7 yeast tfiih in the contracted state within the pre-initiation complex 0.5784 142 665
6o9l-assembly1.cif.gz_7 human holo-pic in the closed state 0.5756 154 664
7r7j-assembly2.cif.gz_B crystal structure of radd with adp 0.5663 150 671
7zsb-assembly1.cif.gz_7 yeast rna polymerase ii transcription pre-initiation complex with the +1 nucleosome and ntp, complex c 0.5607 142 664
8h5y-assembly1.cif.gz_B crystal structure of radd- adp complex 0.5464 150 712
ID Description Score Start End Superfamily
af_E9AH35_45_462_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6227 314 358 2.130.10.10
1wp9D02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.5933 165 366 3.40.50.300
af_A4IBU1_253_491_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.5834 468 664 3.40.50.300
af_A0A1D8PFW0_545_679_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.5764 458 662 3.40.50.300
af_Q4DFV8_2_126_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.5647 305 369 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A4Q3FXW6-F1-model_v4 Restriction endonuclease 0.9678 883 1004 GO:0015668
AF-A0A354ZGP9-F1-model_v4 Restriction endonuclease 0.9645 135 242 GO:0003677
GO:0004519
GO:0005524
AF-X0WXA7-F1-model_v4 Helicase/UvrB N-terminal domain-containing protein 0.9567 73 324 GO:0003677
GO:0005524
GO:0016787
AF-M6EEV5-F1-model_v4 Type III restriction enzyme, res subunit 0.9557 143 378 GO:0003677
GO:0005524
GO:0016787
AF-A0A238YSI1-F1-model_v4 Type III restriction enzyme 0.9535 890 1001

Feature Viewer

pLDDT pTM Quality
79.2 0.64 Medium
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Predicted Structure (AlphaFold2)

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