F132822

General Info

Members Datasets Scaffolds Average Seq Length
127 81 254 243

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10001373|Ga0065707_100013732
Length 271
Sequence VNPSLNDRSASAFGTTHWTQVLAARGESAEAKHALRDLCEAYYAPVEAFIGRYRAGRDDARDLTHQFFAKLLEGNSLKGVERTRGRFRSYLLGAVKHFLSDQADRTSAEKRGSGQTPQSLDASPSHDRSERQEHAPLDVADPHGFPPDAFFDRQWALAIVEKAMSILQAEAQDRGETQRFEVLRRWLIPSEDGAIAAEAARSLDMTEGAFKVAVHRLRQRFRQLVKDQIASSVDGPEALQGELDYLIQALTAAESSPDSSTCRHPPLDRTS

Samples

Sample ID Description Type Environment
1 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
2 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
3 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
10 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
15 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
27 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
33 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
34 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
35 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
36 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
40 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
41 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
42 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
50 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
51 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
52 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
53 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
54 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
55 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
56 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
59 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
60 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
61 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
62 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
63 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
64 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
65 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
66 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
67 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
68 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
69 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
72 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
73 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
74 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
75 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
76 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
77 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
78 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
79 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
80 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
81 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.09
Nodule 0
Rhizoplane 0
Rhizosphere 92.91
Stem 0
Stem Tuber 0
Unclassified 27.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065707_10001373 3300005295 Bacteria 8520
2 Ga0070689_100004843 3300005340 Eukaryota 9134
3 Ga0070675_100381231 3300005354 Bacteria 1255
4 Ga0070667_100167379 3300005367 Unclassified 1939
5 Ga0070700_100240753 3300005441 Unclassified 1293
6 Ga0070681_10113558 3300005458 Unclassified 2648
7 Ga0070679_100109298 3300005530 Bacteria 2751
8 Ga0068853_100000142 3300005539 Bacteria 48829
9 Ga0068853_100000476 3300005539 Bacteria 27350
10 Ga0070686_100042582 3300005544 Unclassified 2845
11 Ga0070704_100017654 3300005549 Bacteria 4543
12 Ga0068863_100572900 3300005841 Bacteria 1116
13 Ga0068860_100472154 3300005843 Unclassified 1249
14 Ga0070717_10192538 3300006028 Unclassified 1782
15 Ga0075362_10002106 3300006177 Bacteria 6573
16 Ga0075366_10341516 3300006195 Bacteria 918
17 Ga0075428_100035000 3300006844 Bacteria 5537
18 Ga0075428_100079876 3300006844 Bacteria 3570
19 Ga0075430_100142744 3300006846 Unclassified 1994
20 Ga0075431_100008680 3300006847 Bacteria 10182
21 Ga0075431_100407500 3300006847 Bacteria 1360
22 Ga0075434_100321940 3300006871 Unclassified 1567
23 Ga0075429_100074520 3300006880 Bacteria 2956
24 Ga0075436_100353992 3300006914 Bacteria 1058
25 Ga0075436_100377711 3300006914 Bacteria 1024
26 Ga0105240_10000069 3300009093 Bacteria 205335
27 Ga0105240_10000260 3300009093 Bacteria 104648
28 Ga0105240_10001740 3300009093 Bacteria 36782
29 Ga0105240_10110550 3300009093 Bacteria 3326
30 Ga0111539_10047786 3300009094 Bacteria 5113
31 Ga0111539_10195638 3300009094 Unclassified 2358
32 Ga0111539_10202640 3300009094 Bacteria 2314
33 Ga0111539_11042997 3300009094 Unclassified 950
34 Ga0105238_10000455 3300009551 Bacteria 42985
35 Ga0105238_10135573 3300009551 Bacteria 2439
36 Ga0105239_10075970 3300010375 Bacteria 3694
37 Ga0157376_10273034 3300014969 Unclassified 1589
38 Ga0207695_10000186 3300025913 Bacteria 179847
39 Ga0207695_10000583 3300025913 Bacteria 74185
40 Ga0207695_10013995 3300025913 Bacteria 9527
41 Ga0207695_10125515 3300025913 Bacteria 2529
42 Ga0207670_10020935 3300025936 Bacteria 4026
43 Ga0207658_10392572 3300025986 Unclassified 1218
44 Ga0207639_10000010 3300026041 Bacteria 415264
45 Ga0207639_10000017 3300026041 Bacteria 256177
46 Ga0207702_10000452 3300026078 Bacteria 46403
47 Ga0265337_1005787 3300028556 Bacteria 4849
48 Ga0265319_1058656 3300028563 Bacteria 1253
49 Ga0265334_10001697 3300028573 Bacteria 10529
50 Ga0265334_10094369 3300028573 Unclassified 1089
51 Ga0265323_10000509 3300028653 Bacteria 21730
52 Ga0265323_10059291 3300028653 Unclassified 1335
53 Ga0265322_10024993 3300028654 Bacteria 1709
54 Ga0265338_10000029 3300028800 Bacteria 271824
55 Ga0265338_10045933 3300028800 Unclassified 4010
56 Ga0265338_10181204 3300028800 Bacteria 1606
57 Ga0265338_10358101 3300028800 Bacteria 1047
58 Ga0265324_10004026 3300029957 Bacteria 6765
59 Ga0265324_10098267 3300029957 Unclassified 995
60 Ga0265330_10090734 3300031235 Bacteria 1312
61 Ga0265320_10053180 3300031240 Unclassified 1958
62 Ga0265320_10080698 3300031240 Unclassified 1519
63 Ga0265320_10094107 3300031240 Bacteria 1385
64 Ga0265325_10010222 3300031241 Bacteria 5444
65 Ga0265340_10080565 3300031247 Unclassified 1533
66 Ga0265339_10001957 3300031249 Bacteria 15125
67 Ga0265331_10000014 3300031250 Bacteria 294002
68 Ga0265327_10003989 3300031251 Bacteria 13462
69 Ga0265316_10143183 3300031344 Bacteria 1794
70 Ga0265313_10000047 3300031595 Bacteria 113587
71 Ga0265314_10000100 3300031711 Bacteria 131357
72 Ga0265314_10009474 3300031711 Bacteria 8214
73 Ga0265342_10025481 3300031712 Bacteria 3716
74 Ga0265342_10322868 3300031712 Unclassified 809
75 Ga0373926_0038621 3300035083 Unclassified 1701
76 Ga0373954_0013412 3300035118 Bacteria 3652
77 Ga0373955_0102197 3300035172 Bacteria 1647
78 Ga0373924_0078224 3300035410 Unclassified 1404
79 Ga0373927_0002724 3300035695 Bacteria 12886
80 Ga0373947_0011147 3300035725 Bacteria 5162
81 Ga0373925_0027928 3300037068 Bacteria 4131
82 Ga0451577_0011831 3300042876 Bacteria 8232
83 Ga0451577_0126265 3300042876 Bacteria 2292
84 Ga0453684_0000389 3300044712 Bacteria 180487
85 Ga0453684_0000707 3300044712 Bacteria 118400
86 Ga0453684_0438470 3300044712 Bacteria 1456
87 Ga0451576_0012867 3300045051 Bacteria 9380
88 Ga0451576_0034981 3300045051 Bacteria 5332
89 Ga0451576_0063132 3300045051 Bacteria 3861
90 Ga0451576_0072488 3300045051 Bacteria 3584
91 Ga0451576_0083071 3300045051 Bacteria 3332
92 Ga0495651_0208429 3300046462 Unclassified 1362
93 Ga0495608_0335397 3300046511 Unclassified 932
94 Ga0495628_0082579 3300046516 Unclassified 2496
95 Ga0495628_0185868 3300046516 Bacteria 1570
96 Ga0495630_0009287 3300046517 Bacteria 7071
97 Ga0495630_0360891 3300046517 Unclassified 1112
98 Ga0495643_0000580 3300046522 Bacteria 44701
99 Ga0495586_0002167 3300046535 Bacteria 10680
100 Ga0495645_0183550 3300046543 Bacteria 1431
101 Ga0495645_0411907 3300046543 Unclassified 859
102 Ga0495634_0067446 3300046642 Bacteria 2367
103 Ga0495613_0182506 3300046689 Unclassified 1486
104 Ga0495613_0289934 3300046689 Unclassified 1135
105 Ga0495684_0108106 3300047471 Bacteria 2101
106 Ga0495684_0272833 3300047471 Bacteria 1223
107 Ga0495684_0387415 3300047471 Unclassified 984
108 Ga0501034_0742186 3300049571 Bacteria 878
109 Ga0501080_0040916 3300049742 Bacteria 4321
110 Ga0501080_0046899 3300049742 Unclassified 4022
111 Ga0501080_0063866 3300049742 Bacteria 3426
112 Ga0501080_0071356 3300049742 Bacteria 3230
113 Ga0501044_0993669 3300049823 Unclassified 711
114 nmdc:mga03683_27466_c1 3300050489 Unclassified 2254
115 nmdc:mga09592_72019_c1 3300050508 Bacteria 2934
116 nmdc:mga09592_729641_c1 3300050508 Unclassified 842
117 nmdc:mga06r32_101502_c1 3300050510 Bacteria 2824
118 nmdc:mga08y16_162212_c1 3300050511 Bacteria 2323
119 nmdc:mga08y16_247181_c1 3300050511 Bacteria 1843
120 nmdc:mga0n895_826824_c1 3300050512 Unclassified 915
121 nmdc:mga08x19_215023_c1 3300050514 Bacteria 1320
122 Ga0500643_046137 3300053087 Bacteria 1260
123 Ga0500559_0006407 3300053136 Bacteria 5318
124 Ga0500616_0004984 3300053153 Bacteria 9206
125 Ga0500616_0036362 3300053153 Bacteria 2672
126 Ga0500616_0128773 3300053153 Bacteria 1198
127 Ga0500616_0206212 3300053153 Bacteria 867
128 Ga0065707_10001373
129 Ga0070689_100004843
130 Ga0070675_100381231
131 Ga0070667_100167379
132 Ga0070700_100240753
133 Ga0070681_10113558
134 Ga0070679_100109298
135 Ga0068853_100000142
136 Ga0068853_100000476
137 Ga0070686_100042582
138 Ga0070704_100017654
139 Ga0068863_100572900
140 Ga0068860_100472154
141 Ga0070717_10192538
142 Ga0075362_10002106
143 Ga0075366_10341516
144 Ga0075428_100035000
145 Ga0075428_100079876
146 Ga0075430_100142744
147 Ga0075431_100008680
148 Ga0075431_100407500
149 Ga0075434_100321940
150 Ga0075429_100074520
151 Ga0075436_100353992
152 Ga0075436_100377711
153 Ga0105240_10000069
154 Ga0105240_10000260
155 Ga0105240_10001740
156 Ga0105240_10110550
157 Ga0111539_10047786
158 Ga0111539_10195638
159 Ga0111539_10202640
160 Ga0111539_11042997
161 Ga0105238_10000455
162 Ga0105238_10135573
163 Ga0105239_10075970
164 Ga0157376_10273034
165 Ga0207695_10000186
166 Ga0207695_10000583
167 Ga0207695_10013995
168 Ga0207695_10125515
169 Ga0207670_10020935
170 Ga0207658_10392572
171 Ga0207639_10000010
172 Ga0207639_10000017
173 Ga0207702_10000452
174 Ga0265337_1005787
175 Ga0265319_1058656
176 Ga0265334_10001697
177 Ga0265334_10094369
178 Ga0265323_10000509
179 Ga0265323_10059291
180 Ga0265322_10024993
181 Ga0265338_10000029
182 Ga0265338_10045933
183 Ga0265338_10181204
184 Ga0265338_10358101
185 Ga0265324_10004026
186 Ga0265324_10098267
187 Ga0265330_10090734
188 Ga0265320_10053180
189 Ga0265320_10080698
190 Ga0265320_10094107
191 Ga0265325_10010222
192 Ga0265340_10080565
193 Ga0265339_10001957
194 Ga0265331_10000014
195 Ga0265327_10003989
196 Ga0265316_10143183
197 Ga0265313_10000047
198 Ga0265314_10000100
199 Ga0265314_10009474
200 Ga0265342_10025481
201 Ga0265342_10322868
202 Ga0373926_0038621
203 Ga0373954_0013412
204 Ga0373955_0102197
205 Ga0373924_0078224
206 Ga0373927_0002724
207 Ga0373947_0011147
208 Ga0373925_0027928
209 Ga0451577_0011831
210 Ga0451577_0126265
211 Ga0453684_0000389
212 Ga0453684_0000707
213 Ga0453684_0438470
214 Ga0451576_0012867
215 Ga0451576_0034981
216 Ga0451576_0063132
217 Ga0451576_0072488
218 Ga0451576_0083071
219 Ga0495651_0208429
220 Ga0495608_0335397
221 Ga0495628_0082579
222 Ga0495628_0185868
223 Ga0495630_0009287
224 Ga0495630_0360891
225 Ga0495643_0000580
226 Ga0495586_0002167
227 Ga0495645_0183550
228 Ga0495645_0411907
229 Ga0495634_0067446
230 Ga0495613_0182506
231 Ga0495613_0289934
232 Ga0495684_0108106
233 Ga0495684_0272833
234 Ga0495684_0387415
235 Ga0501034_0742186
236 Ga0501080_0040916
237 Ga0501080_0046899
238 Ga0501080_0063866
239 Ga0501080_0071356
240 Ga0501044_0993669
241 nmdc:mga03683_27466_c1
242 nmdc:mga09592_72019_c1
243 nmdc:mga09592_729641_c1
244 nmdc:mga06r32_101502_c1
245 nmdc:mga08y16_162212_c1
246 nmdc:mga08y16_247181_c1
247 nmdc:mga0n895_826824_c1
248 nmdc:mga08x19_215023_c1
249 Ga0500643_046137
250 Ga0500559_0006407
251 Ga0500616_0004984
252 Ga0500616_0036362
253 Ga0500616_0128773
254 Ga0500616_0206212

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cmy-assembly1.cif.gz_A-2 structure of a homeodomain in complex with dna 0.7628 178 223
5jlx-assembly1.cif.gz_A antphd with 15bp dna duplex s-monothioated at cytidine-8 0.7574 178 223
5zjq-assembly1.cif.gz_A structure of abdb/exd complex bound to a 'red14' dna sequence 0.7555 178 223
4xic-assembly2.cif.gz_D antphd with 15bp di-thioate modified dna duplex 0.7455 178 223
5h6x-assembly1.cif.gz_A the crystal structure of rpos fragment including a partial region 1.2 and region 2 from intracellular pathogen legionella pneumophila 0.6625 20 106
ID Description Score Start End Superfamily
5zjqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7763 178 223 1.10.10.60
3cmyA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7628 178 223 1.10.10.60
4xicD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7455 178 223 1.10.10.60
4qtrD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.7061 176 223 1.10.10.60
4xicD00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.6266 178 223 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A7X8ULY3-F1-model_v4 RNA polymerase sigma-70 region 4 domain-containing protein 0.941 145 250
AF-A0A7X8ULY3-F1-model_v4 RNA polymerase sigma-70 region 4 domain-containing protein 0.9325 145 250
AF-A0A2V6D277-F1-model_v4 RNA polymerase subunit sigma-24 0.9158 152 250
AF-A0A2V6CP41-F1-model_v4 RNA polymerase subunit sigma-24 0.9152 148 253
AF-A0A2V8MQ12-F1-model_v4 RNA polymerase subunit sigma-24 0.905 148 250

Map