F131577

General Info

Members Datasets Scaffolds Average Seq Length
126 105 126 464

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0003087|Ga0495580_0003087_694_2271
Length 525
Sequence MQAGRNYLRNCAIHAEIERCREEQASCRAHILEIGTDNEGAWMGAGDWLKEEILLISELDKQKTYEDFLDAKAQRGARSGFRPIWMPEFLFDFQAAAVEWICEIGRGAVFADCGLGKTPMQLVWAENVVRKTNRPVLVLTPLAVAAQTVREGQKFGIEVRRTIGPTKQPGVVVTNYEKLHYFDSADFAGVVCDESSAIKAFDGKRRADVTEFLRTIPYRSMWTATAAPNDYIELGTSSEALGVMGQVDMLNRFFKNDQNTSDMRRLVRAPINQGGPRSAGWRFKGHAELPFWRWVCGWARAGRKPSDFGPFSDKRFKLPKLIEREHIVETRTLADGMLFALPATNMQEEREEKRRTIPERCEMAAELTAHTGKPFVIWCQLNDEGDHLERIVPDCKQVYGAMPDEQKEEMYEAFAGGQLRGLVTKHKIGAWGLNWQHCPHVVEFAGHSFEQHYQGVRRCWRFGQPNEVINDIIATEGQRGAMENMRRKGDQADKMFARLVEHMHEAIRIDGGIKYEKLMETPAWL

Samples

Sample ID Description Type Environment
1 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300002070 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 Metagenome Rhizosphere
3 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
10 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
15 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
18 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
21 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
22 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
23 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
24 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
25 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
30 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
64 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
67 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
77 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
78 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
79 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
83 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
84 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
85 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
86 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
87 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
88 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
89 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
90 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
91 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
92 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
93 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
94 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
97 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
98 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
99 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.79
Nodule 0
Rhizoplane 0.79
Rhizosphere 92.06
Stem 0
Stem Tuber 0
Unclassified 6.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS1b_contig_2527144 2162886011 Viruses 4775
2 JGI24750J21931_1000092 3300002070 Bacteria 13636
3 JGI24742J22300_10000378 3300002244 Bacteria 6564
4 JGI25406J46586_10002259 3300003203 Viruses 9086
5 rootH1_10019635 3300003316 Bacteria 14533
6 rootL2_10003367 3300003322 Bacteria 14629
7 rootL2_10065846 3300003322 Bacteria 7286
8 rootH1_10206785 3300003323 Bacteria 2423
9 Ga0065714_10070710 3300005288 Viruses 3787
10 Ga0065712_10067751 3300005290 Bacteria 59152
11 Ga0070683_100000100 3300005329 Bacteria 56399
12 Ga0068869_100000081 3300005334 Bacteria 43718
13 Ga0070682_100018275 3300005337 Bacteria 4096
14 Ga0070689_100060941 3300005340 Viruses 2934
15 Ga0070687_100000005 3300005343 Bacteria 68254
16 Ga0070692_10000001 3300005345 Bacteria 86658
17 Ga0070668_100022015 3300005347 Bacteria 4817
18 Ga0070669_100006863 3300005353 Bacteria 8186
19 Ga0070675_100006638 3300005354 Viruses 8895
20 Ga0070688_100087698 3300005365 Viruses 2027
21 Ga0070714_100089289 3300005435 Viruses 2698
22 Ga0070714_100175486 3300005435 Viruses 1947
23 Ga0070713_100000618 3300005436 Bacteria 22673
24 Ga0070710_10000057 3300005437 Bacteria 50716
25 Ga0070701_10000001 3300005438 Bacteria 97466
26 Ga0070711_100001252 3300005439 Bacteria 13762
27 Ga0070700_100004337 3300005441 Bacteria 7400
28 Ga0070694_100023370 3300005444 Viruses 3975
29 Ga0070681_10026266 3300005458 Bacteria 5853
30 Ga0070706_100083118 3300005467 Bacteria 2966
31 Ga0070684_100003305 3300005535 Bacteria 12080
32 Ga0070686_100162201 3300005544 Bacteria 1575
33 Ga0068855_100000826 3300005563 Bacteria 38309
34 Ga0068857_100002069 3300005577 Bacteria 16300
35 Ga0068852_100065497 3300005616 Bacteria 3170
36 Ga0068861_100018289 3300005719 Bacteria 4991
37 Ga0068862_100000403 3300005844 Bacteria 46612
38 Ga0081539_10001501 3300005985 Bacteria 39433
39 Ga0070712_100005244 3300006175 Bacteria 8018
40 Ga0105240_10111905 3300009093 Viruses 3302
41 Ga0111539_10093888 3300009094 Unclassified 3524
42 Ga0105243_10037855 3300009148 Viruses 3753
43 Ga0105249_10017840 3300009553 Bacteria 6306
44 Ga0105249_10042878 3300009553 Viruses 4116
45 Ga0105249_10154396 3300009553 Unclassified 2213
46 Ga0157372_10145106 3300013307 Bacteria 2737
47 Ga0163161_10068459 3300017792 Bacteria 2594
48 Ga0207692_10000024 3300025898 Bacteria 50750
49 Ga0207707_10020031 3300025912 Bacteria 5836
50 Ga0207693_10015414 3300025915 Bacteria 6132
51 Ga0207662_10000084 3300025918 Bacteria 43794
52 Ga0207681_10000055 3300025923 Bacteria 107660
53 Ga0207659_10014786 3300025926 Viruses 5044
54 Ga0207700_10000609 3300025928 Bacteria 20991
55 Ga0207664_10043324 3300025929 Viruses 3518
56 Ga0207689_10000781 3300025942 Bacteria 30580
57 Ga0207661_10000656 3300025944 Bacteria 22349
58 Ga0207667_10001340 3300025949 Bacteria 30899
59 Ga0207712_10006432 3300025961 Bacteria 7409
60 Ga0207712_10022874 3300025961 Viruses 4120
61 Ga0207668_10022468 3300025972 Bacteria 4039
62 Ga0207708_10004635 3300026075 Bacteria 10120
63 Ga0207702_10155861 3300026078 Bacteria 2082
64 Ga0207676_10010979 3300026095 Bacteria 6466
65 Ga0207674_10023483 3300026116 Bacteria 6604
66 Ga0207698_10170883 3300026142 Bacteria 1914
67 Ga0268265_10000101 3300028380 Bacteria 107563
68 Ga0265326_10002445 3300028558 Bacteria 6260
69 Ga0265319_1005625 3300028563 Bacteria 5962
70 Ga0265338_10097299 3300028800 Bacteria 2412
71 Ga0265338_10142893 3300028800 Bacteria 1872
72 Ga0265324_10000230 3300029957 Bacteria 42351
73 Ga0265320_10028430 3300031240 Viruses 2903
74 Ga0265327_10000349 3300031251 Bacteria 87781
75 Ga0307412_10012527 3300031911 Bacteria 4948
76 Ga0307414_10178303 3300032004 Bacteria 1706
77 Ga0395899_0000219 3300037312 Bacteria 79123
78 Ga0395899_0000278 3300037312 Bacteria 66773
79 Ga0395900_0000264 3300037418 Bacteria 81623
80 Ga0395900_0000353 3300037418 Bacteria 66784
81 Ga0395900_0000524 3300037418 Bacteria 54204
82 Ga0395898_0000507 3300037466 Bacteria 75804
83 Ga0395898_0000599 3300037466 Bacteria 66874
84 Ga0395898_0003819 3300037466 Bacteria 16685
85 Ga0395905_0002626 3300037471 Bacteria 19739
86 Ga0395901_0000252 3300038443 Bacteria 66844
87 Ga0395901_0000408 3300038443 Bacteria 50719
88 Ga0400483_018272 3300039062 Bacteria 8655
89 Ga0400483_256535 3300039062 Bacteria 10088
90 Ga0451804_0029969 3300041463 Viruses 3002
91 Ga0451833_0388636 3300041491 Unclassified 2175
92 Ga0451849_0232241 3300041505 Viruses 4005
93 Ga0451577_0020575 3300042876 Bacteria 6052
94 Ga0453684_0004615 3300044712 Bacteria 28681
95 Ga0451576_0002690 3300045051 Bacteria 25892
96 Ga0451576_0006211 3300045051 Bacteria 14708
97 Ga0451576_0028285 3300045051 Bacteria 6007
98 Ga0451576_0106996 3300045051 Bacteria 2910
99 Ga0466958_0000030 3300045836 Bacteria 40849
100 Ga0495641_0000041 3300046461 Bacteria 81511
101 Ga0495641_0001552 3300046461 Bacteria 19469
102 Ga0495580_0003087 3300046472 Bacteria 14269
103 Ga0495580_0045976 3300046472 Viruses 3099
104 Ga0495664_0001375 3300046477 Bacteria 12856
105 Ga0495585_0011305 3300046492 Bacteria 5286
106 Ga0495630_0000112 3300046517 Bacteria 63454
107 Ga0495630_0075549 3300046517 Viruses 2539
108 Ga0495652_0130738 3300046529 Viruses 1988
109 Ga0495665_0001095 3300046531 Bacteria 14317
110 Ga0495640_0133760 3300046533 Unclassified 1603
111 Ga0495586_0001369 3300046535 Bacteria 13542
112 Ga0495586_0065076 3300046535 Bacteria 1987
113 Ga0495656_0000959 3300046615 Bacteria 9354
114 Ga0495656_0005193 3300046615 Viruses 4489
115 Ga0495611_0014737 3300046648 Viruses 3343
116 Ga0495613_0072900 3300046689 Bacteria 2503
117 Ga0495670_0005673 3300046691 Bacteria 6120
118 Ga0495680_0038887 3300047322 Bacteria 3799
119 Ga0501294_000553 3300049517 Bacteria 4331
120 Ga0501031_0003294 3300049568 Bacteria 10364
121 Ga0501034_0324776 3300049571 Viruses 1471
122 Ga0501042_0000003 3300049578 Bacteria 69442
123 Ga0501035_0033010 3300049822 Bacteria 4707
124 Ga0501044_0089886 3300049823 Bacteria 3099
125 nmdc:mga08y16_75436_c2 3300050511 Unclassified 3150
126 Ga0500594_0010252 3300053118 Bacteria 2173

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025918 Ga0207662_10000084 Ga0207662_100000845 397
2 3300041505 Ga0451849_0232241 Ga0451849_0232241_2703_3974 417
3 3300005334 Ga0068869_100000081 Ga0068869_10000008158 438
4 3300025942 Ga0207689_10000781 Ga0207689_100007813 438
5 3300046535 Ga0495586_0065076 Ga0495586_0065076_24_1412 438
6 3300028800 Ga0265338_10097299 Ga0265338_100972992 439
7 3300037312 Ga0395899_0000278 Ga0395899_0000278_20298_21686 439
8 3300037418 Ga0395900_0000353 Ga0395900_0000353_45071_46459 439
9 3300037466 Ga0395898_0000599 Ga0395898_0000599_49088_50476 439
10 3300037471 Ga0395905_0002626 Ga0395905_0002626_16308_17696 439
11 3300038443 Ga0395901_0000252 Ga0395901_0000252_43315_44703 439
12 3300005544 Ga0070686_100162201 Ga0070686_1001622011 440
13 3300037418 Ga0395900_0000524 Ga0395900_0000524_33127_34494 441
14 3300037466 Ga0395898_0003819 Ga0395898_0003819_4650_6017 441
15 3300049571 Ga0501034_0324776 Ga0501034_0324776_47_1420 441
16 3300005616 Ga0068852_100065497 Ga0068852_1000654972 447
17 3300026142 Ga0207698_10170883 Ga0207698_101708832 447
18 3300003316 rootH1_10019635 rootH1_1001963514 448
19 3300003322 rootL2_10003367 rootL2_1000336722 448
20 3300005340 Ga0070689_100060941 Ga0070689_1000609413 448
21 3300005354 Ga0070675_100006638 Ga0070675_1000066387 448
22 3300005365 Ga0070688_100087698 Ga0070688_1000876981 448
23 3300005437 Ga0070710_10000057 Ga0070710_1000005745 448
24 3300005439 Ga0070711_100001252 Ga0070711_1000012527 448
25 3300009093 Ga0105240_10111905 Ga0105240_101119055 448
26 3300025898 Ga0207692_10000024 Ga0207692_1000002469 448
27 3300025926 Ga0207659_10014786 Ga0207659_100147862 448
28 3300045051 Ga0451576_0002690 Ga0451576_0002690_17174_18565 448
29 3300045051 Ga0451576_0006211 Ga0451576_0006211_1916_3307 448
30 3300053118 Ga0500594_0010252 Ga0500594_0010252_508_1881 448
31 3300003323 rootH1_10206785 rootH1_102067852 449
32 3300037312 Ga0395899_0000219 Ga0395899_0000219_10188_11555 449
33 3300037418 Ga0395900_0000264 Ga0395900_0000264_67569_68936 449
34 3300037466 Ga0395898_0000507 Ga0395898_0000507_67569_68936 449
35 3300038443 Ga0395901_0000408 Ga0395901_0000408_39193_40560 449
36 3300005719 Ga0068861_100018289 Ga0068861_1000182897 450
37 3300009553 Ga0105249_10042878 Ga0105249_100428783 450
38 3300025961 Ga0207712_10022874 Ga0207712_100228743 450
39 3300028800 Ga0265338_10142893 Ga0265338_101428932 450
40 3300046461 Ga0495641_0000041 Ga0495641_0000041_10914_12272 450
41 3300028558 Ga0265326_10002445 Ga0265326_100024459 452
42 3300045051 Ga0451576_0028285 Ga0451576_0028285_2571_3983 452
43 3300046517 Ga0495630_0075549 Ga0495630_0075549_209_1573 452
44 3300005337 Ga0070682_100018275 Ga0070682_1000182752 453
45 3300026078 Ga0207702_10155861 Ga0207702_101558612 453
46 3300031911 Ga0307412_10012527 Ga0307412_100125277 453
47 3300032004 Ga0307414_10178303 Ga0307414_101783032 453
48 3300041463 Ga0451804_0029969 Ga0451804_0029969_540_1919 453
49 3300041491 Ga0451833_0388636 Ga0451833_0388636_328_1707 453
50 3300046461 Ga0495641_0001552 Ga0495641_0001552_2314_3684 453
51 3300046689 Ga0495613_0072900 Ga0495613_0072900_257_1675 453
52 3300003322 rootL2_10065846 rootL2_1006584611 454
53 3300005435 Ga0070714_100175486 Ga0070714_1001754862 454
54 3300009553 Ga0105249_10154396 Ga0105249_101543963 454
55 3300039062 Ga0400483_018272 Ga0400483_018272_6179_7558 454
56 3300039062 Ga0400483_256535 Ga0400483_256535_4095_5474 454
57 3300046492 Ga0495585_0011305 Ga0495585_0011305_1943_3403 454
58 3300046517 Ga0495630_0000112 Ga0495630_0000112_55904_57271 454
59 3300046615 Ga0495656_0000959 Ga0495656_0000959_5861_7321 454
60 3300046648 Ga0495611_0014737 Ga0495611_0014737_49_1452 454
61 3300046691 Ga0495670_0005673 Ga0495670_0005673_1671_3131 454
62 3300005436 Ga0070713_100000618 Ga0070713_1000006187 455
63 3300005444 Ga0070694_100023370 Ga0070694_1000233703 455
64 3300006175 Ga0070712_100005244 Ga0070712_10000524415 455
65 3300009148 Ga0105243_10037855 Ga0105243_100378552 455
66 3300025915 Ga0207693_10015414 Ga0207693_100154149 455
67 3300025928 Ga0207700_10000609 Ga0207700_100006095 455
68 3300031251 Ga0265327_10000349 Ga0265327_1000034912 455
69 3300045836 Ga0466958_0000030 Ga0466958_0000030_26460_27830 455
70 3300005329 Ga0070683_100000100 Ga0070683_10000010038 456
71 3300005343 Ga0070687_100000005 Ga0070687_10000000561 456
72 3300005535 Ga0070684_100003305 Ga0070684_1000033052 456
73 3300005577 Ga0068857_100002069 Ga0068857_10000206926 456
74 3300025944 Ga0207661_10000656 Ga0207661_1000065615 456
75 3300026116 Ga0207674_10023483 Ga0207674_100234833 456
76 3300028563 Ga0265319_1005625 Ga0265319_10056259 456
77 3300046533 Ga0495640_0133760 Ga0495640_0133760_139_1515 456
78 3300047322 Ga0495680_0038887 Ga0495680_0038887_1311_2687 456
79 3300049568 Ga0501031_0003294 Ga0501031_0003294_6584_7969 456
80 3300049822 Ga0501035_0033010 Ga0501035_0033010_914_2299 456
81 3300049823 Ga0501044_0089886 Ga0501044_0089886_623_2008 456
82 3300005345 Ga0070692_10000001 Ga0070692_1000000145 457
83 3300005467 Ga0070706_100083118 Ga0070706_1000831182 457
84 3300045051 Ga0451576_0106996 Ga0451576_0106996_164_1549 457
85 3300002070 JGI24750J21931_1000092 JGI24750J21931_100009222 458
86 3300002244 JGI24742J22300_10000378 JGI24742J22300_100003783 458
87 3300003203 JGI25406J46586_10002259 JGI25406J46586_1000225911 458
88 3300005347 Ga0070668_100022015 Ga0070668_1000220152 458
89 3300005353 Ga0070669_100006863 Ga0070669_1000068638 458
90 3300005441 Ga0070700_100004337 Ga0070700_1000043377 458
91 3300005844 Ga0068862_100000403 Ga0068862_10000040368 458
92 3300005985 Ga0081539_10001501 Ga0081539_1000150115 458
93 3300009553 Ga0105249_10017840 Ga0105249_100178406 458
94 3300013307 Ga0157372_10145106 Ga0157372_101451062 458
95 3300017792 Ga0163161_10068459 Ga0163161_100684593 458
96 3300025923 Ga0207681_10000055 Ga0207681_10000055135 458
97 3300025961 Ga0207712_10006432 Ga0207712_100064327 458
98 3300025972 Ga0207668_10022468 Ga0207668_100224682 458
99 3300026075 Ga0207708_10004635 Ga0207708_1000463513 458
100 3300026095 Ga0207676_10010979 Ga0207676_100109799 458
101 3300028380 Ga0268265_10000101 Ga0268265_1000010165 458
102 3300049517 Ga0501294_000553 Ga0501294_000553_1888_3300 459
103 3300005563 Ga0068855_100000826 Ga0068855_1000008265 460
104 3300025949 Ga0207667_10001340 Ga0207667_100013404 460
105 3300031240 Ga0265320_10028430 Ga0265320_100284302 460
106 3300005438 Ga0070701_10000001 Ga0070701_1000000197 461
107 3300042876 Ga0451577_0020575 Ga0451577_0020575_4332_5753 461
108 3300044712 Ga0453684_0004615 Ga0453684_0004615_4958_6379 461
109 3300049578 Ga0501042_0000003 Ga0501042_0000003_10743_12131 461
110 3300005458 Ga0070681_10026266 Ga0070681_100262668 462
111 3300009094 Ga0111539_10093888 Ga0111539_100938883 462
112 3300025912 Ga0207707_10020031 Ga0207707_100200318 462
113 3300046615 Ga0495656_0005193 Ga0495656_0005193_2336_3757 462
114 3300050511 nmdc:mga08y16_75436_c2 nmdc:mga08y16_75436_c2_69_1493 462
115 3300005435 Ga0070714_100089289 Ga0070714_1000892893 463
116 3300025929 Ga0207664_10043324 Ga0207664_100433245 463
117 3300029957 Ga0265324_10000230 Ga0265324_1000023011 463
118 3300046529 Ga0495652_0130738 Ga0495652_0130738_503_1951 463
119 3300046472 Ga0495580_0003087 Ga0495580_0003087_694_2271 467
120 3300046477 Ga0495664_0001375 Ga0495664_0001375_706_2283 467
121 3300046531 Ga0495665_0001095 Ga0495665_0001095_12668_14245 467
122 3300046535 Ga0495586_0001369 Ga0495586_0001369_698_2275 467
123 3300046472 Ga0495580_0045976 Ga0495580_0045976_644_2101 470
124 3300005288 Ga0065714_10070710 Ga0065714_100707102 471
125 3300005290 Ga0065712_10067751 Ga0065712_1006775116 471
126 2162886011 MRS1b_contig_2527144 MRS1b_0619.00002090 474

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00271

Helicase_C

Helicase conserved C-terminal domain

359

463

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hjv-assembly2.cif.gz_B structure of the second domain (residues 207-368) of the bacillus subtilis yxin protein 0.8482 308 436
2yjt-assembly1.cif.gz_D crystal structure of e. coli dead-box protein srmb bound to regulator of ribonuclease activity a (rraa) 0.8045 306 436
6s8r-assembly1.cif.gz_A d. melanogaster rna helicase me31b in complex with gigyf 0.7939 308 439
6s8s-assembly1.cif.gz_A extended structure of the human ddx6 c-terminal domain in complex with an edc3 fdf peptide 0.7892 305 439
1fuk-assembly1.cif.gz_A crystal structure of the carboxy terminal domain of yeast eif4a 0.7838 306 436
ID Description Score Start End Superfamily
af_P31244_596_785_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8804 309 445 3.40.50.300
af_Q4DMB8_481_666_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8748 293 439 3.40.50.300
af_A0A0P0X8K8_522_695_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8653 320 421 3.40.50.300
af_I1KKL9_539_751_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8643 309 446 3.40.50.300
af_Q9FT69_484_600_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8578 322 421 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A1F4YKF7-F1-model_v4 Helicase C-terminal domain-containing protein 0.9539 9 474
AF-A0A1F4YKF7-F1-model_v4 Helicase C-terminal domain-containing protein 0.9478 9 474
AF-A0A661DQV4-F1-model_v4 Helicase 0.9315 9 473 GO:0003677
GO:0004386
GO:0005524
GO:0016787
AF-A0A1V5SEI2-F1-model_v4 deleted 0.9188 65 463
AF-A0A3S0C574-F1-model_v4 Helicase 0.9178 266 458 GO:0004386

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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