F130794

General Info

Members Datasets Scaffolds Average Seq Length
126 90 126 535

Family's Representative Sequence

Representative Sequence 3300028563|Ga0265319_1001582|Ga0265319_10015827
Length 589
Sequence MLDARRERVVERPENVTHPDRALGELAARQHGVVPVTSAAGGDDRDRARGAGTRPPLPSDAVTPLQDLRAAVAAASTALRNGDSGTAPSVERPRRDGFGDYSTNAAMLLAPSVGAPPREIAERLGQALQERLGTGLAKFEVAGPGFLNLFLADTWHAEALAHVIQQGATYGAGGAATGERILVEFVSANPTGPLVAASGRHAAYGDALAEILAFHGHDVQREYYLNDAGAQVRKLGESVQARALGQDVPEGGYEGDYVAELAQEIADSKTADPDDLAQEAVAKMLERIRATLARFGVTHDRVFSERSLYEGEPSAVRRALAALDESGHAYRSEGALWLRTTTFGDDKDRVLERANGEPTYFASDCAYLLDKQARGFGRQIDVFGADHHGYVARLRGAFQALGGEPDMIEILIMQFVHLIDRGERSAMSKRRGIFNTLDELIDDIGVDATRFFMLQRSHDTTVDLDLDLAREQSNENPVYYVQYAHARIHSILAKAGEGAPLEPAERALIKKLLAFPDEVAEAAERRAPHRVAAYALELAQDFTAFYRDCHVVGAEPAEVEAFRIALSVAAQRTIARALGLLGVSAPDSM

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
3 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
16 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
21 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
22 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
30 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
31 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
32 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
33 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
34 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
35 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
36 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
37 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
38 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
39 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
40 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
41 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
42 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
43 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
46 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
47 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
48 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
49 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
50 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
51 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
52 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
53 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
54 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
57 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
58 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
59 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
60 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
63 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
64 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
65 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
66 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
67 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
68 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
69 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
70 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
71 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
80 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
81 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
82 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
83 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
84 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
85 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
87 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
88 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
89 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
90 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.97
Rhizosphere 81.75
Stem 0
Stem Tuber 0
Unclassified 14.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100134871 3300005329 Bacteria 2337
2 Ga0070660_100017804 3300005339 Bacteria 5183
3 Ga0070659_100000030 3300005366 Bacteria 128662
4 Ga0070714_100148014 3300005435 Bacteria 2114
5 Ga0070713_100082056 3300005436 Bacteria 2752
6 Ga0070710_10000009 3300005437 Bacteria 165863
7 Ga0070711_100033986 3300005439 Bacteria 3399
8 Ga0070681_10041175 3300005458 Bacteria 4629
9 Ga0070707_100090963 3300005468 Bacteria 2954
10 Ga0070698_100033126 3300005471 Bacteria 5352
11 Ga0070697_100005618 3300005536 Bacteria 9664
12 Ga0081455_10013793 3300005937 Bacteria 7953
13 Ga0081455_10111260 3300005937 Bacteria 2176
14 Ga0081539_10003769 3300005985 Bacteria 17944
15 Ga0070717_10000013 3300006028 Bacteria 228046
16 Ga0070712_100000003 3300006175 Bacteria 253696
17 Ga0070712_100018433 3300006175 Bacteria 4535
18 Ga0075430_100092420 3300006846 Bacteria 2530
19 Ga0075431_100065685 3300006847 Bacteria 3746
20 Ga0075429_100094711 3300006880 Bacteria 2604
21 Ga0111539_10013770 3300009094 Bacteria 10102
22 Ga0213876_10012650 3300021384 Bacteria 4489
23 Ga0213876_10025381 3300021384 Bacteria 3127
24 Ga0213876_10029054 3300021384 Bacteria 2916
25 Ga0213875_10000095 3300021388 Bacteria 102332
26 Ga0213875_10016541 3300021388 Bacteria 3574
27 Ga0213875_10027983 3300021388 Bacteria 2681
28 Ga0213875_10040835 3300021388 Bacteria 2184
29 Ga0207692_10000005 3300025898 Bacteria 370169
30 Ga0207693_10000028 3300025915 Bacteria 120041
31 Ga0207693_10003811 3300025915 Bacteria 12836
32 Ga0207663_10001835 3300025916 Bacteria 10017
33 Ga0207657_10027368 3300025919 Bacteria 5223
34 Ga0207681_10015243 3300025923 Bacteria 4793
35 Ga0207664_10002198 3300025929 Bacteria 12845
36 Ga0207690_10000094 3300025932 Bacteria 74114
37 Ga0265326_10000024 3300028558 Bacteria 112928
38 Ga0265319_1000015 3300028563 Bacteria 176382
39 Ga0265319_1001581 3300028563 Bacteria 13345
40 Ga0265319_1001582 3300028563 Bacteria 13344
41 Ga0265319_1004573 3300028563 Bacteria 6814
42 Ga0265334_10000151 3300028573 Bacteria 42917
43 Ga0265318_10001571 3300028577 Bacteria 13227
44 Ga0265336_10003883 3300028666 Bacteria 5739
45 Ga0265338_10013204 3300028800 Bacteria 9347
46 Ga0265338_10043202 3300028800 Bacteria 4183
47 Ga0265324_10003084 3300029957 Bacteria 8124
48 Ga0265324_10007242 3300029957 Bacteria 4522
49 Ga0265332_10032009 3300031238 Bacteria 2293
50 Ga0265320_10001877 3300031240 Bacteria 14846
51 Ga0265320_10008511 3300031240 Bacteria 6274
52 Ga0265340_10001765 3300031247 Bacteria 12355
53 Ga0265316_10019111 3300031344 Bacteria 5869
54 Ga0265313_10017386 3300031595 Bacteria 4090
55 Ga0265314_10003646 3300031711 Bacteria 14811
56 Ga0265314_10008120 3300031711 Bacteria 9033
57 Ga0265342_10020906 3300031712 Bacteria 4186
58 Ga0307405_10015689 3300031731 Bacteria 4110
59 Ga0307416_100095950 3300032002 Bacteria 2562
60 Ga0307415_100017573 3300032126 Bacteria 4293
61 Ga0436364_0171019 3300037853 Bacteria 4784
62 Ga0436364_0287262 3300037853 Bacteria 10374
63 Ga0436364_0300582 3300037853 Bacteria 9432
64 Ga0436364_1056446 3300037853 Bacteria 11279
65 Ga0436364_1294613 3300037853 Bacteria 100298
66 Ga0436365_0584854 3300039437 Bacteria 2829
67 Ga0436365_0589200 3300039437 Bacteria 5727
68 Ga0436365_0985412 3300039437 Bacteria 8510
69 Ga0436365_1002678 3300039437 Bacteria 16809
70 Ga0436365_1549883 3300039437 Bacteria 3921
71 Ga0436360_1297715 3300039438 Bacteria 2211
72 Ga0436363_0801592 3300039450 Bacteria 5073
73 Ga0436362_0682063 3300039453 Bacteria 5087
74 Ga0451577_0000154 3300042876 Bacteria 152777
75 Ga0451577_0008166 3300042876 Bacteria 10202
76 Ga0466969_0017109 3300044656 Bacteria 3789
77 Ga0466966_0030738 3300044684 Bacteria 3484
78 Ga0466966_0046269 3300044684 Bacteria 2779
79 Ga0466961_0001354 3300044693 Bacteria 15106
80 Ga0466961_0020041 3300044693 Bacteria 4303
81 Ga0466963_0000273 3300044694 Bacteria 22985
82 Ga0466963_0029037 3300044694 Bacteria 3556
83 Ga0453684_0000194 3300044712 Bacteria 265783
84 Ga0453684_0000507 3300044712 Bacteria 152015
85 Ga0453684_0072378 3300044712 Bacteria 4352
86 Ga0466968_0016555 3300044735 Bacteria 2937
87 Ga0466968_0025751 3300044735 Bacteria 2411
88 Ga0466970_0007244 3300044765 Bacteria 5556
89 Ga0466957_0028198 3300044842 Bacteria 3341
90 Ga0466957_0087387 3300044842 Bacteria 1949
91 Ga0466959_0008059 3300045049 Bacteria 7426
92 Ga0466959_0011553 3300045049 Bacteria 6346
93 Ga0466959_0111785 3300045049 Bacteria 1949
94 Ga0466958_0010526 3300045836 Bacteria 5182
95 Ga0466967_0009693 3300045976 Bacteria 7166
96 Ga0466967_0022960 3300045976 Bacteria 5103
97 Ga0466967_0094988 3300045976 Bacteria 2716
98 Ga0495620_0000144 3300046515 Bacteria 58204
99 Ga0495645_0003116 3300046543 Bacteria 11236
100 Ga0495684_0134377 3300047471 Bacteria 1857
101 Ga0496100_0000463 3300048903 Bacteria 19446
102 Ga0496101_0005290 3300048904 Bacteria 8219
103 Ga0496109_0003311 3300048912 Bacteria 13457
104 Ga0496112_0108228 3300048915 Bacteria 2750
105 Ga0496113_0007082 3300048916 Bacteria 7178
106 Ga0501031_0132014 3300049568 Bacteria 1631
107 Ga0501036_0075654 3300049572 Bacteria 2847
108 Ga0501038_0122596 3300049574 Bacteria 2142
109 Ga0501039_0043410 3300049575 Bacteria 3473
110 Ga0501040_0119153 3300049576 Bacteria 1851
111 Ga0501041_0032541 3300049577 Bacteria 3152
112 Ga0501046_0086916 3300049580 Bacteria 2410
113 Ga0501048_0033937 3300049582 Bacteria 3684
114 Ga0501071_0011497 3300049587 Bacteria 5968
115 Ga0501074_0101454 3300049590 Bacteria 2060
116 Ga0501075_0088166 3300049591 Bacteria 2352
117 Ga0501079_0020255 3300049741 Bacteria 5084
118 Ga0501079_0115256 3300049741 Bacteria 2089
119 Ga0501080_0052519 3300049742 Bacteria 3793
120 Ga0501081_0031867 3300049743 Bacteria 3573
121 Ga0501035_0134770 3300049822 Bacteria 2151
122 nmdc:mga06r32_89355_c1 3300050510 Bacteria 3008
123 nmdc:mga08y16_39870_c1 3300050511 Bacteria 4926
124 Ga0501084_0096740 3300054114 Bacteria 2479
125 Ga0466962_0010769 3300061719 Bacteria 4395
126 Ga0530510_0093065 3300061734 Bacteria 2200

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044842 Ga0466957_0087387 Ga0466957_0087387_604_1923 401
2 3300037853 Ga0436364_0287262 Ga0436364_0287262_6322_7836 461
3 3300039437 Ga0436365_0985412 Ga0436365_0985412_4196_5710 461
4 3300039450 Ga0436363_0801592 Ga0436363_0801592_1902_3416 461
5 3300054114 Ga0501084_0096740 Ga0501084_0096740_813_2351 470
6 3300031731 Ga0307405_10015689 Ga0307405_100156894 471
7 3300032002 Ga0307416_100095950 Ga0307416_1000959502 471
8 3300050511 nmdc:mga08y16_39870_c1 nmdc:mga08y16_39870_c1_1192_2733 471
9 3300049568 Ga0501031_0132014 Ga0501031_0132014_16_1560 473
10 3300048915 Ga0496112_0108228 Ga0496112_0108228_482_2146 477
11 3300005437 Ga0070710_10000009 Ga0070710_10000009112 479
12 3300025898 Ga0207692_10000005 Ga0207692_10000005215 479
13 3300049741 Ga0501079_0020255 Ga0501079_0020255_1951_3552 479
14 3300049742 Ga0501080_0052519 Ga0501080_0052519_101_1702 479
15 3300021384 Ga0213876_10025381 Ga0213876_100253812 480
16 3300028563 Ga0265319_1004573 Ga0265319_10045735 480
17 3300028800 Ga0265338_10043202 Ga0265338_100432023 480
18 3300029957 Ga0265324_10007242 Ga0265324_100072423 480
19 3300031238 Ga0265332_10032009 Ga0265332_100320092 480
20 3300031240 Ga0265320_10008511 Ga0265320_100085112 480
21 3300031247 Ga0265340_10001765 Ga0265340_1000176512 480
22 3300031344 Ga0265316_10019111 Ga0265316_100191113 480
23 3300031595 Ga0265313_10017386 Ga0265313_100173863 480
24 3300031711 Ga0265314_10003646 Ga0265314_1000364610 480
25 3300031712 Ga0265342_10020906 Ga0265342_100209062 480
26 3300039437 Ga0436365_1549883 Ga0436365_1549883_515_2170 480
27 3300046515 Ga0495620_0000144 Ga0495620_0000144_31177_32814 480
28 3300005439 Ga0070711_100033986 Ga0070711_1000339864 482
29 3300025916 Ga0207663_10001835 Ga0207663_1000183511 482
30 3300039437 Ga0436365_0584854 Ga0436365_0584854_369_1976 482
31 3300044656 Ga0466969_0017109 Ga0466969_0017109_75_1712 482
32 3300044693 Ga0466961_0020041 Ga0466961_0020041_87_1724 482
33 3300045049 Ga0466959_0011553 Ga0466959_0011553_342_1979 482
34 3300049572 Ga0501036_0075654 Ga0501036_0075654_908_2488 483
35 3300049574 Ga0501038_0122596 Ga0501038_0122596_380_1960 483
36 3300049580 Ga0501046_0086916 Ga0501046_0086916_312_1892 483
37 3300049582 Ga0501048_0033937 Ga0501048_0033937_1041_2621 483
38 3300049587 Ga0501071_0011497 Ga0501071_0011497_148_1728 483
39 3300049591 Ga0501075_0088166 Ga0501075_0088166_181_1761 483
40 3300049743 Ga0501081_0031867 Ga0501081_0031867_1545_3125 483
41 3300061734 Ga0530510_0093065 Ga0530510_0093065_316_1896 483
42 3300006847 Ga0075431_100065685 Ga0075431_1000656853 484
43 3300049590 Ga0501074_0101454 Ga0501074_0101454_379_1968 484
44 3300050510 nmdc:mga06r32_89355_c1 nmdc:mga06r32_89355_c1_288_1943 484
45 3300006880 Ga0075429_100094711 Ga0075429_1000947113 485
46 3300005458 Ga0070681_10041175 Ga0070681_100411754 486
47 3300039437 Ga0436365_1002678 Ga0436365_1002678_3009_4655 486
48 3300005937 Ga0081455_10111260 Ga0081455_101112602 487
49 3300021388 Ga0213875_10016541 Ga0213875_100165412 487
50 3300049576 Ga0501040_0119153 Ga0501040_0119153_131_1720 487
51 3300021384 Ga0213876_10012650 Ga0213876_100126505 488
52 3300021388 Ga0213875_10040835 Ga0213875_100408351 488
53 3300005339 Ga0070660_100017804 Ga0070660_1000178046 489
54 3300021388 Ga0213875_10000095 Ga0213875_1000009524 489
55 3300025919 Ga0207657_10027368 Ga0207657_100273683 489
56 3300025929 Ga0207664_10002198 Ga0207664_100021984 489
57 3300037853 Ga0436364_1294613 Ga0436364_1294613_76856_78529 489
58 3300006846 Ga0075430_100092420 Ga0075430_1000924202 490
59 3300028563 Ga0265319_1001582 Ga0265319_10015827 490
60 3300048912 Ga0496109_0003311 Ga0496109_0003311_11081_12709 490
61 3300005471 Ga0070698_100033126 Ga0070698_1000331263 491
62 3300005536 Ga0070697_100005618 Ga0070697_1000056188 491
63 3300006028 Ga0070717_10000013 Ga0070717_1000001356 491
64 3300047471 Ga0495684_0134377 Ga0495684_0134377_46_1689 491
65 3300042876 Ga0451577_0008166 Ga0451577_0008166_4363_6030 492
66 3300044684 Ga0466966_0046269 Ga0466966_0046269_94_1710 492
67 3300044694 Ga0466963_0000273 Ga0466963_0000273_11282_12898 492
68 3300044712 Ga0453684_0000194 Ga0453684_0000194_2549_4216 492
69 3300044735 Ga0466968_0025751 Ga0466968_0025751_117_1733 492
70 3300044765 Ga0466970_0007244 Ga0466970_0007244_389_2005 492
71 3300044842 Ga0466957_0028198 Ga0466957_0028198_1412_3028 492
72 3300045049 Ga0466959_0008059 Ga0466959_0008059_1184_2800 492
73 3300045976 Ga0466967_0022960 Ga0466967_0022960_185_1801 492
74 3300061719 Ga0466962_0010769 Ga0466962_0010769_2199_3815 492
75 3300006175 Ga0070712_100000003 Ga0070712_10000000373 493
76 3300025915 Ga0207693_10000028 Ga0207693_1000002819 493
77 3300039438 Ga0436360_1297715 Ga0436360_1297715_424_2070 493
78 3300028563 Ga0265319_1001581 Ga0265319_10015818 494
79 3300028577 Ga0265318_10001571 Ga0265318_100015712 494
80 3300031240 Ga0265320_10001877 Ga0265320_100018774 494
81 3300031711 Ga0265314_10008120 Ga0265314_100081208 494
82 3300042876 Ga0451577_0000154 Ga0451577_0000154_96226_97896 494
83 3300044712 Ga0453684_0000507 Ga0453684_0000507_54901_56571 494
84 3300044712 Ga0453684_0072378 Ga0453684_0072378_730_2409 494
85 3300046543 Ga0495645_0003116 Ga0495645_0003116_3399_5129 494
86 3300037853 Ga0436364_0300582 Ga0436364_0300582_4522_6147 495
87 3300028563 Ga0265319_1000015 Ga0265319_100001555 496
88 3300039453 Ga0436362_0682063 Ga0436362_0682063_2438_4126 496
89 3300045976 Ga0466967_0009693 Ga0466967_0009693_434_2062 496
90 3300045976 Ga0466967_0094988 Ga0466967_0094988_728_2356 496
91 3300048916 Ga0496113_0007082 Ga0496113_0007082_802_2457 496
92 3300005366 Ga0070659_100000030 Ga0070659_10000003072 497
93 3300005985 Ga0081539_10003769 Ga0081539_1000376917 497
94 3300009094 Ga0111539_10013770 Ga0111539_100137709 497
95 3300025932 Ga0207690_10000094 Ga0207690_1000009455 497
96 3300044735 Ga0466968_0016555 Ga0466968_0016555_614_2242 497
97 3300048903 Ga0496100_0000463 Ga0496100_0000463_7851_9485 497
98 3300048904 Ga0496101_0005290 Ga0496101_0005290_6245_7876 497
99 3300005329 Ga0070683_100134871 Ga0070683_1001348712 498
100 3300005435 Ga0070714_100148014 Ga0070714_1001480142 498
101 3300005436 Ga0070713_100082056 Ga0070713_1000820562 498
102 3300005468 Ga0070707_100090963 Ga0070707_1000909633 498
103 3300005937 Ga0081455_10013793 Ga0081455_100137937 498
104 3300006175 Ga0070712_100018433 Ga0070712_1000184332 498
105 3300021384 Ga0213876_10029054 Ga0213876_100290542 498
106 3300021388 Ga0213875_10027983 Ga0213875_100279832 498
107 3300025915 Ga0207693_10003811 Ga0207693_100038113 498
108 3300025923 Ga0207681_10015243 Ga0207681_100152433 498
109 3300028558 Ga0265326_10000024 Ga0265326_10000024109 498
110 3300028573 Ga0265334_10000151 Ga0265334_1000015141 498
111 3300028666 Ga0265336_10003883 Ga0265336_100038835 498
112 3300028800 Ga0265338_10013204 Ga0265338_100132049 498
113 3300029957 Ga0265324_10003084 Ga0265324_100030844 498
114 3300032126 Ga0307415_100017573 Ga0307415_1000175733 498
115 3300037853 Ga0436364_0171019 Ga0436364_0171019_360_2015 498
116 3300037853 Ga0436364_1056446 Ga0436364_1056446_6396_8033 498
117 3300039437 Ga0436365_0589200 Ga0436365_0589200_2358_3998 498
118 3300044684 Ga0466966_0030738 Ga0466966_0030738_922_2577 498
119 3300044693 Ga0466961_0001354 Ga0466961_0001354_4802_6457 498
120 3300044694 Ga0466963_0029037 Ga0466963_0029037_132_1766 498
121 3300045049 Ga0466959_0111785 Ga0466959_0111785_144_1781 498
122 3300045836 Ga0466958_0010526 Ga0466958_0010526_1114_2769 498
123 3300049575 Ga0501039_0043410 Ga0501039_0043410_1301_2938 498
124 3300049577 Ga0501041_0032541 Ga0501041_0032541_56_1693 498
125 3300049741 Ga0501079_0115256 Ga0501079_0115256_297_1934 498
126 3300049822 Ga0501035_0134770 Ga0501035_0134770_389_2026 498

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05746

DALR_1

DALR anticodon binding domain

481

589

0.96

PF03485

Arg_tRNA_synt_N

Arginyl tRNA synthetase N terminal domain

66

151

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fnr-assembly1.cif.gz_A crystal structure of putative arginyl t-rna synthetase from campylobacter jejuni; 0.8962 73 498
3fnr-assembly1.cif.gz_A crystal structure of putative arginyl t-rna synthetase from campylobacter jejuni; 0.8507 73 498
2zue-assembly1.cif.gz_A crystal structure of pyrococcus horikoshii arginyl-trna synthetase complexed with trna(arg) and an atp analog (anp) 0.8149 4 498
2zue-assembly1.cif.gz_A crystal structure of pyrococcus horikoshii arginyl-trna synthetase complexed with trna(arg) and an atp analog (anp) 0.8088 4 498
5yym-assembly1.cif.gz_A crystal structures of e.coli arginyl-trna synthetase (argrs) in complex with substrate arg 0.7759 7 498
ID Description Score Start End Superfamily
af_Q3U186_457_578_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.933 382 498 1.10.730.10
2zufA03 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9274 387 498 1.10.730.10
af_Q57689_448_566_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9255 384 498 1.10.730.10
af_P11875_454_577_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9248 382 498 1.10.730.10
af_P38714_519_643_1.10.730.10 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9244 382 498 1.10.730.10
ID Description Score Start End GO Terms
AF-A0A4Q3UU70-F1-model_v4 arginine--tRNA ligase (EC 6.1.1.19) 0.9658 382 498 GO:0004814
GO:0005524
GO:0006420
AF-W1UT98-F1-model_v4 deleted 0.9596 180 312
AF-A0A2S6DJ17-F1-model_v4 deleted 0.9547 217 382
AF-A0A1G1JAD0-F1-model_v4 Arginine--tRNA ligase (EC 6.1.1.19) 0.9511 190 498 GO:0004814
GO:0005524
GO:0005737
GO:0006420
AF-A0A355U8Q2-F1-model_v4 arginine--tRNA ligase (EC 6.1.1.19) 0.9505 382 498 GO:0004814
GO:0005524
GO:0006420

Feature Viewer

pLDDT pTM Quality
87.24 0.85 High
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Predicted Structure (AlphaFold2)

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