F128616

General Info

Members Datasets Scaffolds Average Seq Length
125 103 250 244

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3006321560|3006322923
Length 288
Sequence GGTGASGGSGGSGGSGGRSRGGGAAGARGRGAGVTVGDPRYPQAAAAGAGSVDALDAALVGCRACPRLVRWREEAGRVKRRAYLDWTYWARPVPGYGPPDAALAVVALAPAAHGGNRTGRMFTGDPSGDLIYAELYALGLASQPTAVARGDGLALRGVRITSPVHCAPPDNKPTTAERDTCRPWLAHEMDLLRPTLRAVVVLGGFGWQALLPVLAAAGWALPRPRPVFGHGARVPLRSADGTGELLLLGSYHPSRRNVSTRTVTPAMIGEVLRAGAVAAGLPVREGPP

Samples

Sample ID Description Type Environment
1 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
4 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
7 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
8 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
9 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
10 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
13 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
14 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
15 3300009988 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG Metagenome Rhizosphere
16 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
17 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
18 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
19 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
20 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
21 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
22 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
42 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
43 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
44 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
45 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
46 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
47 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
48 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
49 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
50 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
51 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
52 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
53 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
54 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
57 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
58 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
59 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
60 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
63 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
64 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
65 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
66 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
67 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
68 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
69 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
70 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
71 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
72 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
73 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
74 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
77 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
78 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
79 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
80 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
81 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
82 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
86 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
87 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
88 2547132424 Nocardia nova SH22a Isolate Unclassified
89 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
90 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
91 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
92 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
93 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
94 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
95 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
96 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
97 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
98 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
99 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
100 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
101 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
102 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
103 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 86.4
Metatranscriptomes 0
Isolates 13.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.4
Nodule 1.6
Rhizoplane 9.6
Rhizosphere 68.8
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25160J50197_1022084 3300003354 Bacteria 1872
2 Ga0070658_10087363 3300005327 Bacteria 2566
3 Ga0070671_100010190 3300005355 Bacteria 7543
4 Ga0070667_100028752 3300005367 Bacteria 4629
5 Ga0070700_100000004 3300005441 Bacteria 245987
6 Ga0070665_100002075 3300005548 Bacteria 22481
7 Ga0068863_100002059 3300005841 Bacteria 19927
8 Ga0068858_100495382 3300005842 Bacteria 1180
9 Ga0068860_100000465 3300005843 Bacteria 50703
10 Ga0068862_100237732 3300005844 Bacteria 1655
11 Ga0075363_100011983 3300006048 Bacteria 4168
12 Ga0105245_10473555 3300009098 Bacteria 1264
13 Ga0105243_10000454 3300009148 Bacteria 42589
14 Ga0105249_10100032 3300009553 Bacteria 2726
15 Ga0105035_105033 3300009988 Bacteria 1062
16 Ga0157370_10102919 3300013104 Bacteria 2673
17 Ga0157372_10000302 3300013307 Bacteria 54963
18 Ga0157379_10146405 3300014968 Bacteria 2130
19 Ga0213873_10000162 3300021358 Bacteria 12512
20 Ga0213876_10076161 3300021384 Bacteria 1772
21 Ga0213875_10007945 3300021388 Bacteria 5455
22 Ga0207680_10005989 3300025903 Bacteria 5845
23 Ga0207647_10148487 3300025904 Bacteria 1371
24 Ga0207705_10072493 3300025909 Bacteria 2498
25 Ga0207654_10006742 3300025911 Bacteria 5774
26 Ga0207695_10022550 3300025913 Bacteria 7143
27 Ga0207671_10001720 3300025914 Bacteria 24663
28 Ga0207694_10018736 3300025924 Bacteria 5232
29 Ga0207694_10310946 3300025924 Bacteria 1299
30 Ga0207709_10017093 3300025935 Bacteria 4043
31 Ga0207689_10082492 3300025942 Bacteria 2643
32 Ga0207667_10045846 3300025949 Bacteria 4629
33 Ga0207712_10385123 3300025961 Bacteria 1175
34 Ga0207658_10047998 3300025986 Bacteria 3128
35 Ga0207678_10025105 3300026067 Bacteria 5204
36 Ga0207678_10164150 3300026067 Bacteria 1897
37 Ga0207708_10000008 3300026075 Bacteria 245837
38 Ga0207702_10077292 3300026078 Bacteria 2879
39 Ga0207641_10006443 3300026088 Bacteria 9897
40 Ga0207698_10542491 3300026142 Bacteria 1138
41 Ga0268266_10009372 3300028379 Bacteria 8628
42 Ga0268264_10000138 3300028381 Bacteria 172597
43 Ga0307513_10001984 3300031456 Bacteria 28973
44 Ga0307508_10091233 3300031616 Bacteria 2634
45 Ga0307411_10021767 3300032005 Bacteria 3760
46 Ga0436364_0102974 3300037853 Bacteria 74907
47 Ga0436364_1486243 3300037853 Bacteria 20212
48 Ga0436365_0907126 3300039437 Bacteria 3621
49 Ga0436362_1085258 3300039453 Bacteria 12595
50 Ga0451791_0798549 3300041451 Bacteria 10575
51 Ga0451793_0611015 3300041452 Bacteria 20686
52 Ga0451797_1524282 3300041453 Bacteria 2060
53 Ga0451795_0948687 3300041456 Bacteria 1277
54 Ga0451853_2995303 3300041512 Bacteria 6734
55 Ga0466969_0020817 3300044656 Bacteria 3394
56 Ga0466969_0044959 3300044656 Bacteria 2193
57 Ga0466969_0168920 3300044656 Bacteria 1003
58 Ga0466966_0003178 3300044684 Bacteria 10807
59 Ga0466961_0001436 3300044693 Bacteria 14791
60 Ga0466961_0092748 3300044693 Bacteria 1906
61 Ga0466963_0000337 3300044694 Bacteria 21293
62 Ga0466963_0000701 3300044694 Bacteria 16341
63 Ga0466964_0006080 3300044706 Bacteria 4499
64 Ga0466964_0043043 3300044706 Bacteria 1831
65 Ga0466971_0000061 3300044719 Bacteria 41629
66 Ga0466970_0003248 3300044765 Bacteria 7903
67 Ga0466970_0021904 3300044765 Bacteria 3334
68 Ga0466957_0000017 3300044842 Bacteria 66065
69 Ga0466959_0003082 3300045049 Bacteria 10796
70 Ga0466959_0069377 3300045049 Bacteria 2554
71 Ga0466958_0000565 3300045836 Bacteria 15782
72 Ga0466958_0039210 3300045836 Bacteria 2845
73 Ga0466967_0008453 3300045976 Bacteria 7545
74 Ga0466967_0390466 3300045976 Bacteria 1353
75 Ga0466967_0811329 3300045976 Bacteria 929
76 Ga0495651_0023519 3300046462 Bacteria 4790
77 Ga0495651_0201978 3300046462 Bacteria 1390
78 Ga0495585_0027617 3300046492 Bacteria 3239
79 Ga0495594_0004248 3300046499 Bacteria 7357
80 Ga0495608_0244223 3300046511 Bacteria 1121
81 Ga0495628_0022943 3300046516 Bacteria 5123
82 Ga0495652_0002864 3300046529 Bacteria 17395
83 Ga0495652_0200303 3300046529 Bacteria 1516
84 Ga0495645_0010894 3300046543 Bacteria 6388
85 Ga0495588_0005734 3300046674 Bacteria 5541
86 Ga0495600_0048082 3300046809 Bacteria 2783
87 Ga0495604_0059849 3300047317 Bacteria 2918
88 Ga0495604_0086305 3300047317 Bacteria 2340
89 Ga0495636_0003517 3300047318 Bacteria 6073
90 Ga0495683_0076565 3300047323 Bacteria 1636
91 Ga0496108_0075279 3300048911 Bacteria 2852
92 Ga0496108_0293779 3300048911 Bacteria 1415
93 Ga0496109_0033804 3300048912 Bacteria 4602
94 Ga0496109_0052582 3300048912 Bacteria 3713
95 Ga0496109_0136636 3300048912 Bacteria 2291
96 Ga0496112_0048248 3300048915 Bacteria 4176
97 Ga0496112_0222156 3300048915 Bacteria 1845
98 Ga0496113_0016677 3300048916 Bacteria 5079
99 Ga0496122_0000384 3300048925 Bacteria 94131
100 Ga0496123_0000074 3300048926 Bacteria 196689
101 Ga0496124_0000400 3300048927 Bacteria 79176
102 Ga0496125_0006596 3300048928 Bacteria 12496
103 Ga0501047_0164080 3300049581 Bacteria 2093
104 Ga0501047_0279317 3300049581 Bacteria 1515
105 Ga0501035_0046384 3300049822 Bacteria 3909
106 nmdc:mga03n38_22632_c1 3300050490 Bacteria 2546
107 Ga0466962_0000328 3300061719 Bacteria 20352
108 Ga0466962_0009581 3300061719 Bacteria 4644
109 3006322923 3006321560 Bacteria 8247479
110 2548698936 2547132424 Bacteria 8348532
111 2552110665 2551306166 Bacteria 9731570
112 2554260103 2554235005 Bacteria 6457341
113 2644016120 2643221601 Bacteria 7493239
114 2739238606 2738543011 Bacteria 5731169
115 2739366180 2738543034 Bacteria 6084756
116 2811846444 2808606982 Bacteria 7791042
117 2816509473 2816332139 Bacteria 9138787
118 2862383958 2862382967 Bacteria 10317375
119 2863406351 2863404153 Bacteria 9672205
120 2889303040 2889300758 Bacteria 5690814
121 2899363752 2899359706 Bacteria 10940472
122 2919716894 2919713450 Bacteria 7431245
123 2939746082 2939743619 Bacteria 5762299
124 2997600601 2997600082 Bacteria 9896405
125 8008561955 8008558824 Bacteria 10610750
126 JGI25160J50197_1022084
127 Ga0070658_10087363
128 Ga0070671_100010190
129 Ga0070667_100028752
130 Ga0070700_100000004
131 Ga0070665_100002075
132 Ga0068863_100002059
133 Ga0068858_100495382
134 Ga0068860_100000465
135 Ga0068862_100237732
136 Ga0075363_100011983
137 Ga0105245_10473555
138 Ga0105243_10000454
139 Ga0105249_10100032
140 Ga0105035_105033
141 Ga0157370_10102919
142 Ga0157372_10000302
143 Ga0157379_10146405
144 Ga0213873_10000162
145 Ga0213876_10076161
146 Ga0213875_10007945
147 Ga0207680_10005989
148 Ga0207647_10148487
149 Ga0207705_10072493
150 Ga0207654_10006742
151 Ga0207695_10022550
152 Ga0207671_10001720
153 Ga0207694_10018736
154 Ga0207694_10310946
155 Ga0207709_10017093
156 Ga0207689_10082492
157 Ga0207667_10045846
158 Ga0207712_10385123
159 Ga0207658_10047998
160 Ga0207678_10025105
161 Ga0207678_10164150
162 Ga0207708_10000008
163 Ga0207702_10077292
164 Ga0207641_10006443
165 Ga0207698_10542491
166 Ga0268266_10009372
167 Ga0268264_10000138
168 Ga0307513_10001984
169 Ga0307508_10091233
170 Ga0307411_10021767
171 Ga0436364_0102974
172 Ga0436364_1486243
173 Ga0436365_0907126
174 Ga0436362_1085258
175 Ga0451791_0798549
176 Ga0451793_0611015
177 Ga0451797_1524282
178 Ga0451795_0948687
179 Ga0451853_2995303
180 Ga0466969_0020817
181 Ga0466969_0044959
182 Ga0466969_0168920
183 Ga0466966_0003178
184 Ga0466961_0001436
185 Ga0466961_0092748
186 Ga0466963_0000337
187 Ga0466963_0000701
188 Ga0466964_0006080
189 Ga0466964_0043043
190 Ga0466971_0000061
191 Ga0466970_0003248
192 Ga0466970_0021904
193 Ga0466957_0000017
194 Ga0466959_0003082
195 Ga0466959_0069377
196 Ga0466958_0000565
197 Ga0466958_0039210
198 Ga0466967_0008453
199 Ga0466967_0390466
200 Ga0466967_0811329
201 Ga0495651_0023519
202 Ga0495651_0201978
203 Ga0495585_0027617
204 Ga0495594_0004248
205 Ga0495608_0244223
206 Ga0495628_0022943
207 Ga0495652_0002864
208 Ga0495652_0200303
209 Ga0495645_0010894
210 Ga0495588_0005734
211 Ga0495600_0048082
212 Ga0495604_0059849
213 Ga0495604_0086305
214 Ga0495636_0003517
215 Ga0495683_0076565
216 Ga0496108_0075279
217 Ga0496108_0293779
218 Ga0496109_0033804
219 Ga0496109_0052582
220 Ga0496109_0136636
221 Ga0496112_0048248
222 Ga0496112_0222156
223 Ga0496113_0016677
224 Ga0496122_0000384
225 Ga0496123_0000074
226 Ga0496124_0000400
227 Ga0496125_0006596
228 Ga0501047_0164080
229 Ga0501047_0279317
230 Ga0501035_0046384
231 nmdc:mga03n38_22632_c1
232 Ga0466962_0000328
233 Ga0466962_0009581
234 3006322923
235 2548698936
236 2552110665
237 2554260103
238 2644016120
239 2739238606
240 2739366180
241 2811846444
242 2816509473
243 2862383958
244 2863406351
245 2889303040
246 2899363752
247 2919716894
248 2939746082
249 2997600601
250 8008561955

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03167

UDG

Uracil DNA glycosylase superfamily

94

274

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2dp6-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase in complex with ap:c containing dna 0.8267 21 232
2dp6-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase in complex with ap:c containing dna 0.7986 21 232
1ui1-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase from thermus thermophilus hb8 0.6658 19 234
6bro-assembly2.cif.gz_D crystal structure of ask1-d3 ubiquitin ligase form1 0.6642 136 168
6bro-assembly1.cif.gz_B crystal structure of ask1-d3 ubiquitin ligase form1 0.6638 136 168
ID Description Score Start End Superfamily
af_P9WM53_47_267_3.40.470.10 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.8763 21 231 3.40.470.10
af_P9WM53_47_267_3.40.470.10 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.8352 21 231 3.40.470.10
2d3yA00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.829 21 232 3.40.470.10
2d3yA00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.8004 21 232 3.40.470.10
af_P9WN11_22_268_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.6445 135 205 3.40.50.2000
ID Description Score Start End GO Terms
AF-W7T1Z4-F1-model_v4 Uracil-DNA glycosylase, family 4 0.9886 133 230 GO:0006281
GO:0046872
GO:0051539
GO:0097506
AF-A0A6G3DJ27-F1-model_v4 Uracil-DNA glycosylase 0.987 139 233
AF-A0A7Y5P701-F1-model_v4 deleted 0.9618 82 232
AF-A0A429DX33-F1-model_v4 Uracil-DNA glycosylase 0.9587 132 235 GO:0006281
GO:0046872
GO:0051539
GO:0097506
AF-A0A1X4I8D6-F1-model_v4 Uracil-DNA glycosylase 0.9574 147 235

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