F122571

General Info

Members Datasets Scaffolds Average Seq Length
124 67 248 279

Family's Representative Sequence

Representative Sequence 3300014497|Ga0182008_10103652|Ga0182008_101036521
Length 333
Sequence MTTCGPGYGSSSSTRSESAFSNGWAGSALRPTRSSVGDTHPPGGSVGRTRRAPDLTVTARTVELRAIAQAIADALPAGVAEVVLTGSVSRGVADDVSDIEMLIVTERRPELDECYAIAAACGLTGLGTWGPQGVPTKRVSGYRDGVPIELIWWSHAHAAASVDSIFAGELPTSADALAHGIPLRTSGLLAEWQERLRHYPDELAAARIEDAALTWGGFAAAGLLTIIRPGERLALVERMVDDAARVVRIVFAVNRVWQPTLKRLADRAAALPIKPDRLAERIEEALTEPDPRRALLLMTELQADAAALAPDGPNIVRARAWLAEGIAILHGAA

Samples

Sample ID Description Type Environment
1 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
18 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
19 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
20 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
23 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
24 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
38 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
39 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
40 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
41 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
42 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
43 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
44 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
45 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
46 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
47 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
48 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
49 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
50 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
51 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
52 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
53 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
54 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
55 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
56 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
57 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
58 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
59 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
60 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
65 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
66 3300059490 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 7R_CD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.19
Metatranscriptomes 0.81
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 8.06
Rhizosphere 91.13
Stem 0
Stem Tuber 0
Unclassified 10.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0182008_10103652 3300014497 Unclassified 1407
2 Ga0070658_10022821 3300005327 Bacteria 5022
3 Ga0070658_10078181 3300005327 Bacteria 2715
4 Ga0070683_100226154 3300005329 Unclassified 1778
5 Ga0070680_100063509 3300005336 Bacteria 3025
6 Ga0070660_100003866 3300005339 Bacteria 10340
7 Ga0070674_100154411 3300005356 Bacteria 1735
8 Ga0070713_100095726 3300005436 Bacteria 2562
9 Ga0070713_100174208 3300005436 Unclassified 1929
10 Ga0070713_100599877 3300005436 Unclassified 1046
11 Ga0070662_100031635 3300005457 Bacteria 3715
12 Ga0070681_10063880 3300005458 Bacteria 3654
13 Ga0070707_100316492 3300005468 Bacteria 1517
14 Ga0070698_100331710 3300005471 Bacteria 1452
15 Ga0070696_100296552 3300005546 Unclassified 1237
16 Ga0068855_100057899 3300005563 Bacteria 4541
17 Ga0068855_100134306 3300005563 Bacteria 2823
18 Ga0068855_100236352 3300005563 Bacteria 2044
19 Ga0068857_100072430 3300005577 Bacteria 3070
20 Ga0068856_100443889 3300005614 Bacteria 1318
21 Ga0081539_10000888 3300005985 Bacteria 57168
22 Ga0105240_10046772 3300009093 Bacteria 5480
23 Ga0105245_10010360 3300009098 Bacteria 8121
24 Ga0105239_10068495 3300010375 Bacteria 3900
25 Ga0105239_10378344 3300010375 Bacteria 1601
26 Ga0157370_10351967 3300013104 Bacteria 1357
27 Ga0157369_10013286 3300013105 Bacteria 9317
28 Ga0157369_10019147 3300013105 Bacteria 7662
29 Ga0157369_10025833 3300013105 Bacteria 6515
30 Ga0157372_10029776 3300013307 Bacteria 5966
31 Ga0157372_10069199 3300013307 Bacteria 3970
32 Ga0157380_10140801 3300014326 Bacteria 2072
33 Ga0182008_10024068 3300014497 Bacteria 3102
34 Ga0207692_10065973 3300025898 Bacteria 1891
35 Ga0207705_10065549 3300025909 Bacteria 2626
36 Ga0207707_10083435 3300025912 Bacteria 2790
37 Ga0207707_10254148 3300025912 Bacteria 1526
38 Ga0207652_10169337 3300025921 Bacteria 1959
39 Ga0207646_10342394 3300025922 Bacteria 1351
40 Ga0207687_10038490 3300025927 Bacteria 3269
41 Ga0207706_10267279 3300025933 Bacteria 1493
42 Ga0207669_10161256 3300025937 Bacteria 1584
43 Ga0207661_10282525 3300025944 Unclassified 1484
44 Ga0207677_10112054 3300026023 Bacteria 2034
45 Ga0207702_10444098 3300026078 Bacteria 1258
46 Ga0207648_10260650 3300026089 Bacteria 1547
47 Ga0207674_10040341 3300026116 Bacteria 4836
48 Ga0395899_0082024 3300037312 Bacteria 2346
49 Ga0395899_0096841 3300037312 Bacteria 2133
50 Ga0395900_0015574 3300037418 Bacteria 7751
51 Ga0395900_0041128 3300037418 Bacteria 4766
52 Ga0395900_0223136 3300037418 Bacteria 1898
53 Ga0395898_0005936 3300037466 Bacteria 13117
54 Ga0395898_0039489 3300037466 Bacteria 4672
55 Ga0395898_0045848 3300037466 Bacteria 4296
56 Ga0395898_0104235 3300037466 Bacteria 2720
57 Ga0395898_0215502 3300037466 Bacteria 1831
58 Ga0395905_0053266 3300037471 Bacteria 3787
59 Ga0395901_0001626 3300038443 Bacteria 23226
60 Ga0395901_0039714 3300038443 Bacteria 4871
61 Ga0395901_0081633 3300038443 Bacteria 3377
62 Ga0395901_0198886 3300038443 Bacteria 2101
63 Ga0436365_1855289 3300039437 Bacteria 1839
64 Ga0466965_0115641 3300044683 Bacteria 1381
65 Ga0466966_0077394 3300044684 Bacteria 2076
66 Ga0466961_0001091 3300044693 Bacteria 16680
67 Ga0466961_0046783 3300044693 Bacteria 2766
68 Ga0466963_0000037 3300044694 Bacteria 42541
69 Ga0466963_0012708 3300044694 Bacteria 5156
70 Ga0466963_0020190 3300044694 Bacteria 4189
71 Ga0466963_0051256 3300044694 Bacteria 2735
72 Ga0466963_0077339 3300044694 Bacteria 2248
73 Ga0466963_0098834 3300044694 Bacteria 1995
74 Ga0466963_0204352 3300044694 Bacteria 1382
75 Ga0466964_0004574 3300044706 Bacteria 5117
76 Ga0466964_0034373 3300044706 Bacteria 2023
77 Ga0466964_0080054 3300044706 Bacteria 1400
78 Ga0466971_0000411 3300044719 Bacteria 16714
79 Ga0466968_0001014 3300044735 Bacteria 9899
80 Ga0466968_0002641 3300044735 Bacteria 6598
81 Ga0466968_0043885 3300044735 Unclassified 1894
82 Ga0466970_0006982 3300044765 Bacteria 5655
83 Ga0466970_0052391 3300044765 Bacteria 2178
84 Ga0466970_0067314 3300044765 Unclassified 1923
85 Ga0466957_0000448 3300044842 Bacteria 20335
86 Ga0466957_0030955 3300044842 Bacteria 3196
87 Ga0466960_0108859 3300044901 Bacteria 1437
88 Ga0466959_0003416 3300045049 Bacteria 10385
89 Ga0466959_0035370 3300045049 Bacteria 3695
90 Ga0466959_0063071 3300045049 Bacteria 2692
91 Ga0466958_0000148 3300045836 Bacteria 24461
92 Ga0466958_0006448 3300045836 Bacteria 6385
93 Ga0466958_0021424 3300045836 Bacteria 3777
94 Ga0466958_0260655 3300045836 Bacteria 1110
95 Ga0466967_0000496 3300045976 Bacteria 19228
96 Ga0466967_0002200 3300045976 Bacteria 11994
97 Ga0466967_0009001 3300045976 Bacteria 7376
98 Ga0466967_0009709 3300045976 Bacteria 7164
99 Ga0466967_0012205 3300045976 Bacteria 6558
100 Ga0466967_0013847 3300045976 Bacteria 6254
101 Ga0466967_0015336 3300045976 Bacteria 6002
102 Ga0466967_0028038 3300045976 Bacteria 4695
103 Ga0466967_0062516 3300045976 Unclassified 3305
104 Ga0466967_0075323 3300045976 Bacteria 3033
105 Ga0466967_0100249 3300045976 Unclassified 2646
106 Ga0466967_0327488 3300045976 Unclassified 1479
107 Ga0466967_0358536 3300045976 Bacteria 1412
108 Ga0496101_0004821 3300048904 Bacteria 8557
109 Ga0496102_0019089 3300048905 Bacteria 6035
110 Ga0496102_0020193 3300048905 Bacteria 5884
111 Ga0496104_0110098 3300048907 Bacteria 2640
112 Ga0496106_0037323 3300048909 Bacteria 3634
113 Ga0496106_0192152 3300048909 Bacteria 1623
114 Ga0496110_0355494 3300048913 Bacteria 1335
115 Ga0496112_0045975 3300048915 Bacteria 4280
116 Ga0496113_0230497 3300048916 Unclassified 1477
117 Ga0496114_0015946 3300048917 Bacteria 6047
118 Ga0501067_0004496 3300049583 Bacteria 7693
119 Ga0501067_0019633 3300049583 Bacteria 3741
120 Ga0501067_0127359 3300049583 Unclassified 1416
121 Ga0501067_0246150 3300049583 Bacteria 995
122 Ga0501069_0004762 3300049585 Bacteria 7022
123 Ga0587066_000941 3300059490 Bacteria 2712
124 Ga0466962_0023654 3300061719 Bacteria 2952
125 Ga0182008_10103652
126 Ga0070658_10022821
127 Ga0070658_10078181
128 Ga0070683_100226154
129 Ga0070680_100063509
130 Ga0070660_100003866
131 Ga0070674_100154411
132 Ga0070713_100095726
133 Ga0070713_100174208
134 Ga0070713_100599877
135 Ga0070662_100031635
136 Ga0070681_10063880
137 Ga0070707_100316492
138 Ga0070698_100331710
139 Ga0070696_100296552
140 Ga0068855_100057899
141 Ga0068855_100134306
142 Ga0068855_100236352
143 Ga0068857_100072430
144 Ga0068856_100443889
145 Ga0081539_10000888
146 Ga0105240_10046772
147 Ga0105245_10010360
148 Ga0105239_10068495
149 Ga0105239_10378344
150 Ga0157370_10351967
151 Ga0157369_10013286
152 Ga0157369_10019147
153 Ga0157369_10025833
154 Ga0157372_10029776
155 Ga0157372_10069199
156 Ga0157380_10140801
157 Ga0182008_10024068
158 Ga0207692_10065973
159 Ga0207705_10065549
160 Ga0207707_10083435
161 Ga0207707_10254148
162 Ga0207652_10169337
163 Ga0207646_10342394
164 Ga0207687_10038490
165 Ga0207706_10267279
166 Ga0207669_10161256
167 Ga0207661_10282525
168 Ga0207677_10112054
169 Ga0207702_10444098
170 Ga0207648_10260650
171 Ga0207674_10040341
172 Ga0395899_0082024
173 Ga0395899_0096841
174 Ga0395900_0015574
175 Ga0395900_0041128
176 Ga0395900_0223136
177 Ga0395898_0005936
178 Ga0395898_0039489
179 Ga0395898_0045848
180 Ga0395898_0104235
181 Ga0395898_0215502
182 Ga0395905_0053266
183 Ga0395901_0001626
184 Ga0395901_0039714
185 Ga0395901_0081633
186 Ga0395901_0198886
187 Ga0436365_1855289
188 Ga0466965_0115641
189 Ga0466966_0077394
190 Ga0466961_0001091
191 Ga0466961_0046783
192 Ga0466963_0000037
193 Ga0466963_0012708
194 Ga0466963_0020190
195 Ga0466963_0051256
196 Ga0466963_0077339
197 Ga0466963_0098834
198 Ga0466963_0204352
199 Ga0466964_0004574
200 Ga0466964_0034373
201 Ga0466964_0080054
202 Ga0466971_0000411
203 Ga0466968_0001014
204 Ga0466968_0002641
205 Ga0466968_0043885
206 Ga0466970_0006982
207 Ga0466970_0052391
208 Ga0466970_0067314
209 Ga0466957_0000448
210 Ga0466957_0030955
211 Ga0466960_0108859
212 Ga0466959_0003416
213 Ga0466959_0035370
214 Ga0466959_0063071
215 Ga0466958_0000148
216 Ga0466958_0006448
217 Ga0466958_0021424
218 Ga0466958_0260655
219 Ga0466967_0000496
220 Ga0466967_0002200
221 Ga0466967_0009001
222 Ga0466967_0009709
223 Ga0466967_0012205
224 Ga0466967_0013847
225 Ga0466967_0015336
226 Ga0466967_0028038
227 Ga0466967_0062516
228 Ga0466967_0075323
229 Ga0466967_0100249
230 Ga0466967_0327488
231 Ga0466967_0358536
232 Ga0496101_0004821
233 Ga0496102_0019089
234 Ga0496102_0020193
235 Ga0496104_0110098
236 Ga0496106_0037323
237 Ga0496106_0192152
238 Ga0496110_0355494
239 Ga0496112_0045975
240 Ga0496113_0230497
241 Ga0496114_0015946
242 Ga0501067_0004496
243 Ga0501067_0019633
244 Ga0501067_0127359
245 Ga0501067_0246150
246 Ga0501069_0004762
247 Ga0587066_000941
248 Ga0466962_0023654

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01909

NTP_transf_2

Nucleotidyltransferase domain

64

124

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r2x-assembly1.cif.gz_C unique conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of shewanella oneidensis uridine phosphorylase in the free form and in complex with uridine 0.7926 65 94
4jp5-assembly1.cif.gz_E x-ray structure of uridine phosphorylase from yersinia pseudotuberculosis in unliganded state at 2.27 a resolution 0.7811 65 94
4mch-assembly1.cif.gz_A crystal structure of uridine phosphorylase from vibrio fischeri es114 complexed with 6-hydroxy-1-naphthoic acid, nysgrc target 029520. 0.7688 52 94
2rff-assembly1.cif.gz_A crystal structure of a putative nucleotidyltransferase (np_343093.1) from sulfolobus solfataricus at 1.40 a resolution 0.7572 3 102
7sf8-assembly1.cif.gz_B gpr56 (adgrg1) 7tm domain bound to tethered agonist in complex with g protein heterotrimer 0.7461 78 97
ID Description Score Start End Superfamily
af_G5EFL0_93_204_1.10.1410.10 Mainly Alpha;Orthogonal Bundle;Poly(a)-polymerase, middle domain; 0.762 3 94 1.10.1410.10
af_Q09408_168_266_1.10.1410.10 Mainly Alpha;Orthogonal Bundle;Poly(a)-polymerase, middle domain; 0.7354 26 94 1.10.1410.10
4fidB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7321 70 95 3.40.50.300
3c18C01 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.7242 19 142 3.30.460.10
af_Q54TZ1_588_696_1.10.1410.10 Mainly Alpha;Orthogonal Bundle;Poly(a)-polymerase, middle domain; 0.7097 8 94 1.10.1410.10
ID Description Score Start End GO Terms
AF-A0A538IH81-F1-model_v4 Polymerase nucleotidyl transferase domain-containing protein 0.9882 2 273 GO:0016779
AF-A0A538CNL4-F1-model_v4 DUF4037 domain-containing protein 0.9611 82 274
AF-A0A538CNL4-F1-model_v4 DUF4037 domain-containing protein 0.9515 82 274
AF-A0A6L4ZGX1-F1-model_v4 Uncharacterized protein 0.9439 114 274
AF-A0A838DTS0-F1-model_v4 DUF4037 domain-containing protein 0.9264 162 273

Map