F122421

General Info

Members Datasets Scaffolds Average Seq Length
124 102 248 385

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10066177|Ga0105239_100661772
Length 432
Sequence VIEVLVVGGGPAGRALAAECGALGLATTLVDPAPHAPWRATYGAWLDELPAELPPLAATARGRVVARTSHELERTYAVFDVPTLRDRLDARLAAAGVRIVTGRVIDFAHDPGAPGGRVVLLADGTRLTAHALVDAGGHRAPLSHHARRSTRSAPPGKHVDGRPTLHGRYAHRAARRRGPTDPGRRQPRVAAEQTAYGVVVDAATAAPVVGPGEALFMDWRPDHGEPGWPTFLYAIPLGGDAVLLEETSLARRPGLPLPVLRRRLHARLAHHGITVWPDARVERVRFPVDGPRHATPGVLGYGAAAPLVHPASGFSVADALRLAPLAADALATGGVPVAQRLIWSARAVAVHRLRRIGLEALLRMPPEAVPDFFETFFDLPARHRHAYLSGRDDLAGHLAAMGALFGHADVRLRRRLVSPAFRRPAPALPTPH

Samples

Sample ID Description Type Environment
1 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
2 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
28 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
31 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
47 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
48 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
49 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
50 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
51 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
52 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
53 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
54 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
55 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
56 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
57 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
58 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
59 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
60 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
61 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
62 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
63 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
64 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
65 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
66 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
67 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
68 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
69 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
70 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
84 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
85 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
86 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
87 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
88 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
89 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
90 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
91 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
92 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
93 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
94 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
95 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
96 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
97 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
98 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
99 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
100 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
101 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
102 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.71
Metatranscriptomes 0
Isolates 11.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.35
Nodule 0
Rhizoplane 4.03
Rhizosphere 62.1
Stem 0
Stem Tuber 0
Unclassified 0.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105239_10066177 3300010375 Bacteria 3970
2 Ga0055540_1005885 3300003792 Bacteria 5017
3 Ga0068869_100023293 3300005334 Bacteria 4274
4 Ga0068868_100053643 3300005338 Bacteria 3176
5 Ga0070668_100082610 3300005347 Bacteria 2520
6 Ga0070671_100000431 3300005355 Bacteria 29129
7 Ga0070688_100017118 3300005365 Bacteria 4158
8 Ga0070714_100205130 3300005435 Bacteria 1805
9 Ga0070714_100358793 3300005435 Bacteria 1370
10 Ga0070663_100158499 3300005455 Bacteria 1741
11 Ga0070662_100083845 3300005457 Bacteria 2380
12 Ga0070684_100040437 3300005535 Bacteria 4015
13 Ga0070665_100008865 3300005548 Bacteria 10185
14 Ga0068857_100049783 3300005577 Bacteria 3717
15 Ga0068852_100063228 3300005616 Bacteria 3222
16 Ga0068861_100059941 3300005719 Bacteria 2915
17 Ga0068862_100009839 3300005844 Bacteria 7897
18 Ga0070717_10036911 3300006028 Bacteria 3966
19 Ga0075365_10042455 3300006038 Bacteria 2973
20 Ga0075365_10056958 3300006038 Bacteria 2600
21 Ga0075365_10078285 3300006038 Bacteria 2235
22 Ga0075365_10083876 3300006038 Bacteria 2162
23 Ga0075363_100000808 3300006048 Bacteria 10827
24 Ga0075363_100038749 3300006048 Bacteria 2506
25 Ga0075364_10010633 3300006051 Bacteria 5566
26 Ga0075364_10058295 3300006051 Bacteria 2530
27 Ga0075362_10079275 3300006177 Bacteria 1512
28 Ga0075367_10000886 3300006178 Bacteria 12023
29 Ga0075370_10002741 3300006353 Bacteria 8253
30 Ga0075370_10027665 3300006353 Bacteria 3147
31 Ga0075430_100158740 3300006846 Bacteria 1883
32 Ga0111539_10110375 3300009094 Bacteria 3228
33 Ga0105249_10145084 3300009553 Bacteria 2279
34 Ga0105239_10146021 3300010375 Bacteria 2638
35 Ga0157377_10018654 3300014745 Bacteria 3609
36 Ga0213873_10000167 3300021358 Bacteria 12291
37 Ga0213875_10000075 3300021388 Bacteria 117877
38 Ga0209673_1005005 3300025273 Bacteria 6853
39 Ga0209051_1000330 3300025303 Bacteria 71428
40 Ga0209051_1001478 3300025303 Bacteria 19797
41 Ga0207688_10045293 3300025901 Bacteria 2454
42 Ga0207645_10093159 3300025907 Bacteria 1938
43 Ga0207687_10017444 3300025927 Bacteria 4728
44 Ga0207644_10001209 3300025931 Bacteria 16631
45 Ga0207689_10037140 3300025942 Bacteria 4042
46 Ga0207640_10055065 3300025981 Bacteria 2603
47 Ga0207678_10028908 3300026067 Bacteria 4838
48 Ga0207708_10006256 3300026075 Bacteria 8822
49 Ga0207674_10068205 3300026116 Bacteria 3579
50 Ga0207674_10182955 3300026116 Bacteria 2047
51 Ga0207683_10039900 3300026121 Bacteria 4095
52 Ga0207698_10012564 3300026142 Bacteria 5547
53 Ga0268266_10046897 3300028379 Bacteria 3699
54 Ga0268264_10017511 3300028381 Bacteria 5868
55 Ga0307513_10050268 3300031456 Bacteria 4508
56 Ga0307507_10031767 3300033179 Bacteria 5533
57 Ga0373956_0001654 3300035119 Bacteria 9177
58 Ga0373937_0375028 3300036401 Bacteria 1349
59 Ga0316582_0067750 3300036647 Bacteria 2304
60 Ga0316584_0016084 3300036712 Bacteria 5359
61 Ga0436364_0899816 3300037853 Bacteria 74519
62 Ga0436364_0925398 3300037853 Bacteria 4991
63 Ga0436364_1416533 3300037853 Bacteria 27396
64 Ga0436365_1323462 3300039437 Bacteria 3290
65 Ga0436362_0480266 3300039453 Bacteria 1439
66 Ga0436362_1111775 3300039453 Bacteria 41294
67 Ga0439466_0005441 3300041411 Bacteria 4866
68 Ga0439431_0009525 3300041997 Bacteria 2195
69 Ga0466963_0000311 3300044694 Bacteria 21898
70 Ga0466964_0039881 3300044706 Bacteria 1894
71 Ga0466971_0001763 3300044719 Bacteria 9182
72 Ga0466968_0002402 3300044735 Bacteria 6864
73 Ga0466968_0062227 3300044735 Bacteria 1611
74 Ga0466970_0011217 3300044765 Bacteria 4566
75 Ga0466957_0005399 3300044842 Bacteria 7174
76 Ga0466958_0007934 3300045836 Bacteria 5866
77 Ga0466967_0001005 3300045976 Bacteria 15405
78 Ga0466967_0001717 3300045976 Bacteria 13046
79 Ga0466967_0093433 3300045976 Unclassified 2737
80 Ga0466967_0230496 3300045976 Bacteria 1763
81 Ga0496100_0008042 3300048903 Bacteria 5861
82 Ga0496101_0032374 3300048904 Bacteria 3680
83 Ga0496104_0016450 3300048907 Bacteria 6718
84 Ga0496109_0277413 3300048912 Bacteria 1579
85 Ga0496110_0123173 3300048913 Bacteria 2338
86 Ga0496119_0000534 3300048922 Bacteria 51791
87 Ga0496120_0002712 3300048923 Bacteria 17322
88 Ga0501033_0053298 3300049570 Bacteria 2996
89 Ga0501034_0004939 3300049571 Bacteria 14681
90 Ga0501036_0002788 3300049572 Bacteria 13839
91 Ga0501037_0026207 3300049573 Bacteria 4308
92 Ga0501038_0003384 3300049574 Bacteria 14869
93 Ga0501039_0025966 3300049575 Bacteria 4503
94 Ga0501042_0005514 3300049578 Bacteria 8157
95 Ga0501046_0027399 3300049580 Bacteria 4648
96 Ga0501047_0008027 3300049581 Bacteria 9956
97 Ga0501048_0024737 3300049582 Bacteria 4381
98 Ga0501035_0003492 3300049822 Bacteria 15035
99 Ga0501044_0002870 3300049823 Bacteria 19623
100 nmdc:mga03n38_4155_c1 3300050490 Bacteria 4756
101 nmdc:mga03n38_45384_c1 3300050490 Bacteria 1935
102 nmdc:mga00v17_21434_c1 3300050491 Bacteria 3715
103 nmdc:mga00v17_29446_c1 3300050491 Bacteria 3222
104 nmdc:mga00v17_84671_c1 3300050491 Bacteria 1985
105 nmdc:mga07m45_10972_c1 3300050496 Bacteria 4747
106 nmdc:mga07m45_7877_c1 3300050496 Bacteria 5454
107 nmdc:mga07m45_8204_c1 3300050496 Bacteria 5359
108 nmdc:mga08y16_201304_c1 3300050511 Bacteria 2063
109 Ga0501084_0312210 3300054114 Bacteria 1328
110 Ga0466962_0010126 3300061719 Bacteria 4526
111 2558908478 2558860112 Bacteria 9931328
112 2644487743 2643221687 Bacteria 6500351
113 2644637998 2643221715 Bacteria 6671032
114 2738702983 2738541274 Bacteria 6909446
115 2739333838 2738543028 Bacteria 6917070
116 2753074018 2751185734 Bacteria 8863695
117 2791911449 2791354901 Bacteria 8322202
118 2816510385 2816332139 Bacteria 9138787
119 2863068151 2863067949 Bacteria 8541735
120 2866556767 2866552031 Bacteria 5824618
121 2870725711 2870721527 Bacteria 9689237
122 2902816416 2902810491 Bacteria 6794147
123 2902840842 2902837492 Bacteria 6697721
124 8056208715 8056207758 Bacteria 8639239
125 Ga0105239_10066177
126 Ga0055540_1005885
127 Ga0068869_100023293
128 Ga0068868_100053643
129 Ga0070668_100082610
130 Ga0070671_100000431
131 Ga0070688_100017118
132 Ga0070714_100205130
133 Ga0070714_100358793
134 Ga0070663_100158499
135 Ga0070662_100083845
136 Ga0070684_100040437
137 Ga0070665_100008865
138 Ga0068857_100049783
139 Ga0068852_100063228
140 Ga0068861_100059941
141 Ga0068862_100009839
142 Ga0070717_10036911
143 Ga0075365_10042455
144 Ga0075365_10056958
145 Ga0075365_10078285
146 Ga0075365_10083876
147 Ga0075363_100000808
148 Ga0075363_100038749
149 Ga0075364_10010633
150 Ga0075364_10058295
151 Ga0075362_10079275
152 Ga0075367_10000886
153 Ga0075370_10002741
154 Ga0075370_10027665
155 Ga0075430_100158740
156 Ga0111539_10110375
157 Ga0105249_10145084
158 Ga0105239_10146021
159 Ga0157377_10018654
160 Ga0213873_10000167
161 Ga0213875_10000075
162 Ga0209673_1005005
163 Ga0209051_1000330
164 Ga0209051_1001478
165 Ga0207688_10045293
166 Ga0207645_10093159
167 Ga0207687_10017444
168 Ga0207644_10001209
169 Ga0207689_10037140
170 Ga0207640_10055065
171 Ga0207678_10028908
172 Ga0207708_10006256
173 Ga0207674_10068205
174 Ga0207674_10182955
175 Ga0207683_10039900
176 Ga0207698_10012564
177 Ga0268266_10046897
178 Ga0268264_10017511
179 Ga0307513_10050268
180 Ga0307507_10031767
181 Ga0373956_0001654
182 Ga0373937_0375028
183 Ga0316582_0067750
184 Ga0316584_0016084
185 Ga0436364_0899816
186 Ga0436364_0925398
187 Ga0436364_1416533
188 Ga0436365_1323462
189 Ga0436362_0480266
190 Ga0436362_1111775
191 Ga0439466_0005441
192 Ga0439431_0009525
193 Ga0466963_0000311
194 Ga0466964_0039881
195 Ga0466971_0001763
196 Ga0466968_0002402
197 Ga0466968_0062227
198 Ga0466970_0011217
199 Ga0466957_0005399
200 Ga0466958_0007934
201 Ga0466967_0001005
202 Ga0466967_0001717
203 Ga0466967_0093433
204 Ga0466967_0230496
205 Ga0496100_0008042
206 Ga0496101_0032374
207 Ga0496104_0016450
208 Ga0496109_0277413
209 Ga0496110_0123173
210 Ga0496119_0000534
211 Ga0496120_0002712
212 Ga0501033_0053298
213 Ga0501034_0004939
214 Ga0501036_0002788
215 Ga0501037_0026207
216 Ga0501038_0003384
217 Ga0501039_0025966
218 Ga0501042_0005514
219 Ga0501046_0027399
220 Ga0501047_0008027
221 Ga0501048_0024737
222 Ga0501035_0003492
223 Ga0501044_0002870
224 nmdc:mga03n38_4155_c1
225 nmdc:mga03n38_45384_c1
226 nmdc:mga00v17_21434_c1
227 nmdc:mga00v17_29446_c1
228 nmdc:mga00v17_84671_c1
229 nmdc:mga07m45_10972_c1
230 nmdc:mga07m45_7877_c1
231 nmdc:mga07m45_8204_c1
232 nmdc:mga08y16_201304_c1
233 Ga0501084_0312210
234 Ga0466962_0010126
235 2558908478
236 2644487743
237 2644637998
238 2738702983
239 2739333838
240 2753074018
241 2791911449
242 2816510385
243 2863068151
244 2866556767
245 2870725711
246 2902816416
247 2902840842
248 8056208715

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05834

Lycopene_cycl

Lycopene cyclase protein

3

414

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
8jyt-assembly2.cif.gz_B ancestral imine reducatase n560 0.9704 5 31
8a5z-assembly1.cif.gz_A imine reductase from ensifer adhaerens a208n mutant in complex with nadp+ 0.962 5 32
8a3x-assembly1.cif.gz_B imine reductase from ensifer adhaerens in complex with nadp+ 0.9495 5 32
7wnn-assembly1.cif.gz_A crystal structure of imine reductase from actinoalloteichus hymeniacidonis in complex with nadph 0.9443 4 32
7wnw-assembly1.cif.gz_B crystal structure of imine reductase mutant(m5) from actinoalloteichus hymeniacidonis in complex with nadph 0.9413 4 32
ID Description Score Start End Superfamily
af_I6XF25_1_136_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 1.004 5 34 3.40.50.720
af_P9WN19_146_269_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9856 6 34 3.50.50.60
af_K8F7V7_1826_1944_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9599 6 34 3.50.50.60
af_M9NFH8_1768_1873_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9554 5 34 3.40.50.720
2f1kD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9541 5 32 3.40.50.720
ID Description Score Start End GO Terms
AF-K0UNV6-F1-model_v4 Lycopene cyclase family protein 0.9934 5 398 GO:0016117
GO:0016705
GO:0016860
AF-A0A0M2K0J5-F1-model_v4 Lycopene cyclase 0.9922 5 396 GO:0016117
GO:0016705
GO:0016860
AF-K0UNV6-F1-model_v4 Lycopene cyclase family protein 0.9859 5 398 GO:0016117
GO:0016705
GO:0016860
AF-A0A0M2K0J5-F1-model_v4 Lycopene cyclase 0.9847 5 396 GO:0016117
GO:0016705
GO:0016860
AF-A0A543D3S5-F1-model_v4 Lycopene cyclase (CrtL-type) 0.9789 1 397 GO:0016117
GO:0016705
GO:0016860

Map