F112007

General Info

Members Datasets Scaffolds Average Seq Length
121 108 242 1152

Family's Representative Sequence

Representative Sequence 3300053092|Ga0500583_0000239|Ga0500583_0000239_8982_12512
Length 1176
Sequence MPTTPEAIVAAITDATATGFRGRLIARGQARAMIWRDGVLPADAPAFAPQLSFDLHSYGYGLLGLGLRLLEMGGDASQARIAFEQAATALESVMARGDRQEADRHFHFVMAAASYHLAHLSARAYSLLAFIAADENFSPIEHALARLMRRDITTLRAQVYEYRIDGQGSDARIAALIRERLGQEDAADQPDRDGHDFLFEGVDLALTDNFFGAFALFLLALDRGERALVNQAIAQLRESLAVCAELNLLPQWWAHRIAIHLLSDLWSNTFHEKLPLLPIGGNAPTWPGLRELFIASLGRRSRAEVDLWPSQIEAATRAADQSDDLVVSLPTSAGKTRVAELCILRCLAGGRRVMFVTPLRALSAQTEATLQRTFGPLGKTISALYGSIGMSGFDEDAIRERDIVVATPEKLDFALRNDPSLLDNVGLLVFDEGHMIGPGEREVRYEVQIQRLLRRQDADQRRIVCLSAILPDGNQMEDFAAWLRRDGPGGAIKNDWRPTRLRFGEVVWNSPTARLNLRVGDERPFVPRFLTGAAPPLFVRPKKLRTRIFPDSQQELSLATAWQLTGDGQTVLIYCPERRSVEPFAKVIVDLNERGALPSLLVADAALLQTAIALGEEWLGADSDILKCLRLGVALHHGALPTAYRKEVERLLREGTLKVTISSPTLAQGLNLSATALVMHSLYRAGERIKVSEFKNVIGRAGRAYIDVEGLVLYPIFEDTRNKKHDEWVALIEDLGAREMESGLIQLILALLTRMHARIGGNLDQLMDYVVNNAAAWTFPEIPGEKADKRERARKDWERHVATLDTAILSLIGEADVPDHGIEAALDVILQSSLWQRRLLRTDDASRAAYRSTLLTRSRYIWARSTPATRRGYFLAGLGLEAGHALDAVAPEANELLVQANGALLAADAEAAILAITTLAERVFAFYPFTPDPFPDNWRAILRRWLLGQPLAGLVAGQEGDALQFIEGGLVYRLPWAMEALRVRAAANGDVVGQFGLALDNYELGLAVPAVETGTMNRSASILIQAGFNSRLAAIKAVIDTGATFTTGQELRTWLRSPEVAVWSAQPDWPTSETRTMWVEFTQEYAPRDNRTWAERRYRGQAQWYGAPPPPGAPVTLHHWNGQPLVLSGEGLPIALLSHPLNPQRRGLVRATMAPQPGEIDLSYLGPDDLWVAPQP

Samples

Sample ID Description Type Environment
1 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
9 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
10 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
11 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
12 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
13 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
14 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
15 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
16 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
17 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
18 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
19 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
24 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
25 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
26 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
27 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
28 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
29 3300033464 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules Metagenome Nodule
30 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
31 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
32 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
33 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
34 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
35 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
36 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
37 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
38 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
39 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
40 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
41 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
42 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
43 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
44 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
45 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
46 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
47 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
48 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
49 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
50 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
51 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
52 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
53 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
54 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
55 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
56 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
57 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
58 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
59 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
60 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
61 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
62 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
63 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
66 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
67 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
68 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
69 2507262055 Bradyrhizobium sp. WSM1417 Isolate Nodule
70 2509276022 Mesorhizobium australicum WSM2073 Isolate Nodule
71 2512875024
72 2513237089 Sinorhizobium medicae DI28 Isolate Nodule
73 2513237305 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
74 2524023205 Bradyrhizobium sp. Cp5.3 Isolate Nodule
75 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
76 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
77 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
78 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
79 2599185324 Pseudomonas sp. NFACC46-3 Isolate Rhizoplane
80 2675903420 Pseudomonas fluorescens Ps006 Isolate Unclassified
81 2721755686 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
82 2791355256 Rhizobium sp. M10 Isolate Nodule
83 2802429636 Rhizobium anhuiense JX3 Isolate Nodule
84 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
85 2842110456 Rhizobium esperanzae SEMIA 414 Isolate Nodule
86 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
87 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
88 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
89 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
90 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
91 2924733363 Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 Isolate Nodule
92 2933586486 Rhizobium leguminosarum SEMIA 4039 Isolate Nodule
93 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
94 2936381700 Rhizobium chutanense C16 Isolate Unclassified
95 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
96 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
97 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
98 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
99 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
100 2965119406 Mesorhizobium sp. M2A.F.Ca.ET.067.02.1.1 Isolate Nodule
101 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
102 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
103 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
104 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
105 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
106 2971820967 Klebsiella sp. MPUS7 Isolate Rhizosphere
107 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
108 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 66.94
Metatranscriptomes 0
Isolates 33.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.79
Nodule 26.45
Rhizoplane 2.48
Rhizosphere 48.76
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500583_0000239 3300053092 Bacteria 19644
2 rootL2_10080116 3300003322 Bacteria 14031
3 Ga0055524_1003838 3300003775 Bacteria 7134
4 Ga0055531_10000661 3300003794 Bacteria 29611
5 Ga0065714_10064889 3300005288 Bacteria 16017
6 Ga0070658_10000006 3300005327 Bacteria 374835
7 Ga0070658_10000396 3300005327 Bacteria 37928
8 Ga0070658_10017034 3300005327 Bacteria 5815
9 Ga0070679_100002278 3300005530 Bacteria 17345
10 Ga0068858_100000025 3300005842 Bacteria 160546
11 Ga0081455_10000825 3300005937 Bacteria 39866
12 Ga0081455_10002086 3300005937 Bacteria 23842
13 Ga0075432_10000148 3300006058 Bacteria 16752
14 Ga0099826_10000400 3300006948 Bacteria 20399
15 Ga0157371_10004833 3300013102 Bacteria 11587
16 Ga0157370_10005838 3300013104 Bacteria 13750
17 Ga0157370_10022613 3300013104 Bacteria 6255
18 Ga0182008_10008643 3300014497 Bacteria 5543
19 Ga0163161_10007751 3300017792 Bacteria 7427
20 Ga0213872_10000165 3300021361 Bacteria 60035
21 Ga0209256_1000529 3300025299 Bacteria 55351
22 Ga0209257_1000927 3300025304 Bacteria 40647
23 Ga0207705_10000006 3300025909 Bacteria 657147
24 Ga0207705_10000012 3300025909 Bacteria 472336
25 Ga0207705_10015031 3300025909 Bacteria 5564
26 Ga0207693_10039504 3300025915 Bacteria 3716
27 Ga0207652_10000077 3300025921 Bacteria 106573
28 Ga0207703_10000146 3300026035 Bacteria 83180
29 Ga0209282_1000442 3300027666 Bacteria 20414
30 Ga0207428_10000942 3300027907 Bacteria 32341
31 Ga0307515_10001797 3300028794 Bacteria 47838
32 Ga0307511_10001992 3300030521 Bacteria 21448
33 Ga0315914_1004661 3300031967 Bacteria 20408
34 Ga0315913_1002090 3300033430 Bacteria 23027
35 Ga0315915_1003326 3300033464 Bacteria 20407
36 Ga0373927_0007410 3300035695 Bacteria 7428
37 Ga0395899_0001572 3300037312 Bacteria 19210
38 Ga0395900_0002698 3300037418 Bacteria 19402
39 Ga0395900_0005348 3300037418 Bacteria 13452
40 Ga0395898_0003060 3300037466 Bacteria 18943
41 Ga0395901_0000025 3300038443 Bacteria 263463
42 Ga0395901_0002467 3300038443 Bacteria 18767
43 Ga0436361_1213391 3300039447 Bacteria 89294
44 Ga0439438_000022 3300041405 Bacteria 108022
45 Ga0439447_000547 3300041407 Bacteria 13929
46 Ga0439431_0000022 3300041997 Bacteria 24835
47 Ga0439432_000005 3300042006 Bacteria 103122
48 Ga0439432_003004 3300042006 Bacteria 6277
49 Ga0453684_0014802 3300044712 Bacteria 12427
50 Ga0495653_0000010 3300046463 Bacteria 274131
51 Ga0495653_0000915 3300046463 Bacteria 22831
52 Ga0495607_0000763 3300046501 Bacteria 30837
53 Ga0495620_0000281 3300046515 Bacteria 37101
54 Ga0495620_0005221 3300046515 Bacteria 7268
55 Ga0495597_0001218 3300046542 Bacteria 19143
56 Ga0495611_0001224 3300046648 Bacteria 13268
57 Ga0495625_0017943 3300046660 Bacteria 5531
58 Ga0495613_0034427 3300046689 Bacteria 3762
59 Ga0495649_0007640 3300046694 Bacteria 6566
60 Ga0495649_0008974 3300046694 Bacteria 5977
61 Ga0495600_0011851 3300046809 Bacteria 5444
62 Ga0495674_0016468 3300047319 Bacteria 6895
63 Ga0495672_0001536 3300047320 Bacteria 22593
64 Ga0495685_000003 3300047447 Bacteria 119490
65 Ga0495593_0001180 3300047673 Bacteria 15272
66 Ga0496112_0018819 3300048915 Bacteria 6508
67 Ga0496117_0000443 3300048920 Bacteria 68680
68 Ga0496118_0000246 3300048921 Bacteria 96199
69 Ga0496121_0001526 3300048924 Bacteria 38831
70 Ga0496121_0020624 3300048924 Bacteria 6508
71 Ga0496122_0000402 3300048925 Bacteria 91833
72 Ga0496123_0000028 3300048926 Bacteria 306006
73 Ga0496124_0004050 3300048927 Bacteria 17380
74 Ga0496125_0000199 3300048928 Bacteria 126676
75 Ga0496126_0018407 3300048929 Bacteria 6921
76 Ga0501038_0015659 3300049574 Bacteria 6893
77 Ga0501043_0031295 3300049579 Bacteria 4183
78 Ga0501269_000108 3300049766 Bacteria 26054
79 Ga0501044_0009962 3300049823 Bacteria 10325
80 Ga0500566_0000059 3300053094 Bacteria 53200
81 Ga0500641_0000619 3300053096 Bacteria 12828
82 2507511602 2507262055 Bacteria 8048963
83 2509398927 2509276022 Bacteria 6200534
84 2512959684 2512875024 Bacteria 7195110
85 2513607143 2513237089 Bacteria 6553624
86 2514421752 2513237305 Bacteria 7293571
87 2524442122 2524023205 Bacteria 8918781
88 2526214158 2526164512 Bacteria 4025691
89 2537876677 2537561587 Bacteria 5425293
90 2585168806 2582581283 Bacteria 6030556
91 2599903623 2599185292 Bacteria 6290804
92 2600070162 2599185324 Bacteria 6590677
93 2677899000 2675903420 Bacteria 6247433
94 2723572114 2721755686 Bacteria 7343952
95 2793299424 2791355256 Bacteria 6798008
96 2806066778 2802429636 Bacteria 7597525
97 2812481631 2811994917 Bacteria 7761064
98 2842117274 2842110456 Bacteria 7656360
99 2842514795 2842509118 Bacteria 6850950
100 2870076154 2870068957 Bacteria 8925310
101 2915985611 2915980308 Bacteria 6624279
102 2917834459 2917832318 Bacteria 5346010
103 2919170862 2919166419 Bacteria 4952238
104 2924735071 2924733363 Bacteria 7574837
105 2933590044 2933586486 Bacteria 7667493
106 2935781503 2935777560 Bacteria 8077691
107 2936386282 2936381700 Bacteria 7006523
108 2937070411 2937063883 Bacteria 7199456
109 2937099822 2937098957 Bacteria 7249374
110 2960615036 2960610863 Bacteria 6691244
111 2960686367 2960680706 Bacteria 6624464
112 2964676501 2964670856 Bacteria 6851364
113 2965122555 2965119406 Bacteria 6956431
114 2967685323 2967678726 Bacteria 7264382
115 2967720084 2967714385 Bacteria 7000047
116 2970040482 2970033650 Bacteria 7118744
117 2970075101 2970068827 Bacteria 7123112
118 2970157131 2970156795 Bacteria 7168044
119 2971823659 2971820967 Bacteria 5823634
120 2977557872 2977551784 Bacteria 7125765
121 8048749503 8048746797 Bacteria 3557226
122 Ga0500583_0000239
123 rootL2_10080116
124 Ga0055524_1003838
125 Ga0055531_10000661
126 Ga0065714_10064889
127 Ga0070658_10000006
128 Ga0070658_10000396
129 Ga0070658_10017034
130 Ga0070679_100002278
131 Ga0068858_100000025
132 Ga0081455_10000825
133 Ga0081455_10002086
134 Ga0075432_10000148
135 Ga0099826_10000400
136 Ga0157371_10004833
137 Ga0157370_10005838
138 Ga0157370_10022613
139 Ga0182008_10008643
140 Ga0163161_10007751
141 Ga0213872_10000165
142 Ga0209256_1000529
143 Ga0209257_1000927
144 Ga0207705_10000006
145 Ga0207705_10000012
146 Ga0207705_10015031
147 Ga0207693_10039504
148 Ga0207652_10000077
149 Ga0207703_10000146
150 Ga0209282_1000442
151 Ga0207428_10000942
152 Ga0307515_10001797
153 Ga0307511_10001992
154 Ga0315914_1004661
155 Ga0315913_1002090
156 Ga0315915_1003326
157 Ga0373927_0007410
158 Ga0395899_0001572
159 Ga0395900_0002698
160 Ga0395900_0005348
161 Ga0395898_0003060
162 Ga0395901_0000025
163 Ga0395901_0002467
164 Ga0436361_1213391
165 Ga0439438_000022
166 Ga0439447_000547
167 Ga0439431_0000022
168 Ga0439432_000005
169 Ga0439432_003004
170 Ga0453684_0014802
171 Ga0495653_0000010
172 Ga0495653_0000915
173 Ga0495607_0000763
174 Ga0495620_0000281
175 Ga0495620_0005221
176 Ga0495597_0001218
177 Ga0495611_0001224
178 Ga0495625_0017943
179 Ga0495613_0034427
180 Ga0495649_0007640
181 Ga0495649_0008974
182 Ga0495600_0011851
183 Ga0495674_0016468
184 Ga0495672_0001536
185 Ga0495685_000003
186 Ga0495593_0001180
187 Ga0496112_0018819
188 Ga0496117_0000443
189 Ga0496118_0000246
190 Ga0496121_0001526
191 Ga0496121_0020624
192 Ga0496122_0000402
193 Ga0496123_0000028
194 Ga0496124_0004050
195 Ga0496125_0000199
196 Ga0496126_0018407
197 Ga0501038_0015659
198 Ga0501043_0031295
199 Ga0501269_000108
200 Ga0501044_0009962
201 Ga0500566_0000059
202 Ga0500641_0000619
203 2507511602
204 2509398927
205 2512959684
206 2513607143
207 2514421752
208 2524442122
209 2526214158
210 2537876677
211 2585168806
212 2599903623
213 2600070162
214 2677899000
215 2723572114
216 2793299424
217 2806066778
218 2812481631
219 2842117274
220 2842514795
221 2870076154
222 2915985611
223 2917834459
224 2919170862
225 2924735071
226 2933590044
227 2935781503
228 2936386282
229 2937070411
230 2937099822
231 2960615036
232 2960686367
233 2964676501
234 2965122555
235 2967685323
236 2967720084
237 2970040482
238 2970075101
239 2970157131
240 2971823659
241 2977557872
242 8048749503

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00271

Helicase_C

Helicase conserved C-terminal domain

611

705

0.86

PF00270

DEAD

DEAD/DEAH box helicase

308

478

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ear-assembly1.cif.gz_A novel dimerization motif in the dead box rna helicase hera: form 1, partial dimer 0.7835 553 730
1qva-assembly1.cif.gz_A yeast initiation factor 4a n-terminal domain 0.7715 305 490
8enk-assembly1.cif.gz_A crystal structure of uap56 in complex with tho1, the yeast homolog of human sarnp 0.7589 309 730
3dkp-assembly1.cif.gz_A human dead-box rna-helicase ddx52, conserved domain i in complex with adp 0.7571 305 488
2g9n-assembly1.cif.gz_A structure of the dead domain of human eukaryotic initiation factor 4a, eif4a 0.748 311 491
ID Description Score Start End Superfamily
2zjaA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8836 302 498 3.40.50.300
5lj5B07 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8785 322 470 3.40.50.300
2va8B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8729 309 498 3.40.50.300
af_A0A1D8PMR5_1181_1395_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.849 304 483 3.40.50.300
4bujE01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8406 304 487 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A0U5MHQ2-F1-model_v4 Helicase ATP-binding domain-containing protein 0.9693 1 723 GO:0003676
GO:0004386
GO:0005524
GO:0016787
AF-A0A0U5MHQ2-F1-model_v4 Helicase ATP-binding domain-containing protein 0.9628 1 723 GO:0003676
GO:0004386
GO:0005524
GO:0016787
AF-A0A377V7P1-F1-model_v4 Uncharacterized protein 0.9541 909 1079
AF-F4GVS4-F1-model_v4 DEAD/DEAH box helicase-like protein 0.9474 527 1164 GO:0004386
GO:0005524
GO:0016787
AF-A0A1N7AGB4-F1-model_v4 DEAD/DEAH box helicase 0.9455 2 739 GO:0003676
GO:0004386
GO:0005524
GO:0016787

Map