F110783

General Info

Members Datasets Scaffolds Average Seq Length
121 54 242 382

Family's Representative Sequence

Representative Sequence 3300031728|Ga0316578_10026047|Ga0316578_100260473
Length 411
Sequence MQSGCRVSSVPTAFISFFRNFVAVMSDRSYPLQIGIVAGESSGDALGAGLIRAIQEREPNAIFEGIGGPRMTDAGCFSLYPMEQLSIMGFTEVLRHLPALLGVRRDLREHFLATPPDIFIGIDAPDFNLGFERSLGRAGIRTLHYVSPSVWAWRRYRVRRIARSCDCLLTLFPFEEDFYREQPLQVRYVGHPLADRLADEVNPATARHHLGLALETPLVAMLPGSRRDEVRRLAGPFIRTALWCWKLMPDMRFVVALANRECRAEFEKELRQHRESPPMTLLNGRSLEAMAAADAVLLACGTAALECMLLKRPMVIAYRMSPLSYRIARLLSRTRSYSLPNLLVGKPVVREIIQHGLTAEKLGGEIMRLINNRRLTRELTEIFSGIHAELRRDANRSAADAVLAMVGRNDA

Samples

Sample ID Description Type Environment
1 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
7 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
8 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
9 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
10 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
11 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
12 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
13 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
14 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
15 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
18 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
19 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
20 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
21 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
22 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
23 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
24 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
25 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
26 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
27 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
28 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
29 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
30 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
31 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
32 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
33 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
34 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
35 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
36 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
37 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
38 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
39 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
40 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
41 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
42 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
43 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
44 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
45 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
46 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
47 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
48 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
49 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
50 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
51 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
52 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
53 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
54 2738541276 Cellvibrio sp. YR554 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.69
Metatranscriptomes 2.48
Isolates 0.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.22
Nodule 0
Rhizoplane 0
Rhizosphere 47.93
Stem 0
Stem Tuber 0
Unclassified 4.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316578_10026047 3300031728 Unclassified 3295
2 rootH2_10226196 3300003320 Bacteria 3796
3 rootH1_10029867 3300003323 Bacteria 5242
4 rootH1_10055647 3300003323 Bacteria 19770
5 Ga0070658_10065329 3300005327 Bacteria 2969
6 Ga0070707_100029091 3300005468 Bacteria 5259
7 Ga0081539_10066498 3300005985 Bacteria 1953
8 Ga0075365_10043509 3300006038 Bacteria 2940
9 Ga0075363_100016816 3300006048 Bacteria 3617
10 Ga0075364_10000673 3300006051 Bacteria 17735
11 Ga0075364_10002341 3300006051 Bacteria 10641
12 Ga0075369_10000512 3300006186 Bacteria 12138
13 Ga0075427_10000039 3300006194 Bacteria 9269
14 Ga0075366_10119913 3300006195 Bacteria 1585
15 Ga0075370_10000162 3300006353 Bacteria 22862
16 Ga0075434_100015638 3300006871 Bacteria 7283
17 Ga0207705_10021908 3300025909 Unclassified 4559
18 Ga0207646_10101153 3300025922 Bacteria 2584
19 Ga0307408_100000216 3300031548 Bacteria 61491
20 Ga0307408_100000250 3300031548 Bacteria 55645
21 Ga0316575_10005439 3300031665 Bacteria 4540
22 Ga0316579_10012572 3300031691 Bacteria 3625
23 Ga0316579_10017104 3300031691 Bacteria 3177
24 Ga0316576_10012864 3300031727 Bacteria 5538
25 Ga0316576_10016983 3300031727 Bacteria 4934
26 Ga0316576_10050695 3300031727 Bacteria 3019
27 Ga0316578_10019203 3300031728 Bacteria 3757
28 Ga0316578_10028818 3300031728 Bacteria 3147
29 Ga0316577_10010183 3300031733 Bacteria 5067
30 Ga0316577_10042765 3300031733 Bacteria 2535
31 Ga0316577_10053409 3300031733 Bacteria 2255
32 Ga0316577_10124031 3300031733 Bacteria 1452
33 Ga0307406_10000623 3300031901 Bacteria 20224
34 Ga0316583_10008178 3300032133 Bacteria 3767
35 Ga0316580_10002080 3300032139 Bacteria 5434
36 Ga0316593_10000173 3300032168 Bacteria 9569
37 Ga0316593_10000692 3300032168 Bacteria 6574
38 Ga0316596_1000453 3300033541 Bacteria 6871
39 Ga0316574_0002915 3300035398 Bacteria 8705
40 Ga0316574_0006469 3300035398 Bacteria 6335
41 Ga0316574_0010566 3300035398 Bacteria 5223
42 Ga0316574_0023734 3300035398 Bacteria 3665
43 Ga0316574_0031641 3300035398 Bacteria 3210
44 Ga0316574_0041829 3300035398 Bacteria 2826
45 Ga0316574_0058063 3300035398 Bacteria 2424
46 Ga0316574_0074630 3300035398 Bacteria 2146
47 Ga0316574_0144736 3300035398 Bacteria 1531
48 Ga0373927_0088847 3300035695 Bacteria 2006
49 Ga0373927_0151443 3300035695 Bacteria 1519
50 Ga0373937_0364202 3300036401 Bacteria 1370
51 Ga0316582_0001677 3300036647 Bacteria 9930
52 Ga0316582_0005992 3300036647 Bacteria 6332
53 Ga0316582_0014581 3300036647 Bacteria 4465
54 Ga0316582_0047810 3300036647 Bacteria 2703
55 Ga0316582_0050172 3300036647 Bacteria 2642
56 Ga0316582_0124315 3300036647 Bacteria 1729
57 Ga0316582_0292166 3300036647 Bacteria 1119
58 Ga0316584_0001792 3300036712 Bacteria 13245
59 Ga0316584_0007321 3300036712 Bacteria 7537
60 Ga0316584_0020194 3300036712 Bacteria 4825
61 Ga0316584_0035541 3300036712 Bacteria 3697
62 Ga0316584_0044141 3300036712 Bacteria 3324
63 Ga0316584_0166557 3300036712 Bacteria 1636
64 Ga0316581_0005717 3300037588 Bacteria 3257
65 Ga0400484_07893 3300038725 Bacteria 4439
66 Ga0400484_22999 3300038725 Bacteria 40826
67 Ga0400484_26336 3300038725 Bacteria 3183
68 Ga0400484_30145 3300038725 Bacteria 11884
69 Ga0400484_31844 3300038725 Bacteria 15274
70 Ga0400490_24671 3300038726 Bacteria 15777
71 Ga0400490_26919 3300038726 Bacteria 3438
72 Ga0400490_29153 3300038726 Bacteria 26709
73 Ga0400490_52271 3300038726 Bacteria 4454
74 Ga0400490_55744 3300038726 Bacteria 86921
75 Ga0400490_56804 3300038726 Bacteria 19256
76 Ga0400491_26238 3300038727 Bacteria 5854
77 Ga0400485_02890 3300038735 Bacteria 8963
78 Ga0400485_04462 3300038735 Bacteria 6670
79 Ga0400488_14598 3300038741 Bacteria 8781
80 Ga0400488_15012 3300038741 Bacteria 4149
81 Ga0400488_61323 3300038741 Bacteria 2772
82 Ga0400488_62726 3300038741 Bacteria 3541
83 Ga0400486_00114 3300038742 Bacteria 11672
84 Ga0400486_08527 3300038742 Bacteria 3907
85 Ga0400486_14851 3300038742 Bacteria 63108
86 Ga0400486_18909 3300038742 Bacteria 2676
87 Ga0400483_004216 3300039062 Bacteria 4538
88 Ga0400483_031978 3300039062 Bacteria 104878
89 Ga0400483_032262 3300039062 Bacteria 4809
90 Ga0400483_036995 3300039062 Unclassified 1604
91 Ga0400483_046240 3300039062 Bacteria 1516
92 Ga0400483_088306 3300039062 Bacteria 112344
93 Ga0400483_088745 3300039062 Bacteria 4120
94 Ga0400483_147134 3300039062 Bacteria 7731
95 Ga0400483_179583 3300039062 Bacteria 6792
96 Ga0400483_194190 3300039062 Bacteria 89056
97 Ga0400483_239353 3300039062 Bacteria 1498
98 Ga0400483_248491 3300039062 Bacteria 4231
99 Ga0400483_249569 3300039062 Bacteria 1557
100 Ga0400483_265474 3300039062 Unclassified 1497
101 Ga0400489_12713 3300039093 Bacteria 13861
102 Ga0400487_14076 3300039110 Bacteria 135338
103 Ga0400487_31065 3300039110 Bacteria 2171
104 Ga0400487_46408 3300039110 Bacteria 8656
105 Ga0400487_54961 3300039110 Bacteria 48611
106 Ga0400487_60767 3300039110 Bacteria 2155
107 Ga0436365_0099942 3300039437 Bacteria 4267
108 Ga0453684_0001981 3300044712 Bacteria 52539
109 Ga0495580_0015198 3300046472 Bacteria 5819
110 Ga0501034_0149115 3300049571 Bacteria 2315
111 nmdc:mga03n38_231_c1 3300050490 Bacteria 12982
112 nmdc:mga00v17_24423_c1 3300050491 Bacteria 3507
113 nmdc:mga00v17_406_c2 3300050491 Bacteria 15794
114 nmdc:mga00v17_94_c1 3300050491 Bacteria 52910
115 nmdc:mga0yw44_86_c1 3300050492 Bacteria 32863
116 nmdc:mga06z11_350_c1 3300050494 Bacteria 17384
117 nmdc:mga04h51_9535_c1 3300050495 Unclassified 2637
118 nmdc:mga07m45_364_c1 3300050496 Bacteria 18499
119 nmdc:mga0n895_8768_c1 3300050512 Bacteria 8793
120 nmdc:mga0sz30_89_c1 3300050516 Bacteria 34888
121 2738715434 2738541276 Bacteria 4690596
122 Ga0316578_10026047
123 rootH2_10226196
124 rootH1_10029867
125 rootH1_10055647
126 Ga0070658_10065329
127 Ga0070707_100029091
128 Ga0081539_10066498
129 Ga0075365_10043509
130 Ga0075363_100016816
131 Ga0075364_10000673
132 Ga0075364_10002341
133 Ga0075369_10000512
134 Ga0075427_10000039
135 Ga0075366_10119913
136 Ga0075370_10000162
137 Ga0075434_100015638
138 Ga0207705_10021908
139 Ga0207646_10101153
140 Ga0307408_100000216
141 Ga0307408_100000250
142 Ga0316575_10005439
143 Ga0316579_10012572
144 Ga0316579_10017104
145 Ga0316576_10012864
146 Ga0316576_10016983
147 Ga0316576_10050695
148 Ga0316578_10019203
149 Ga0316578_10028818
150 Ga0316577_10010183
151 Ga0316577_10042765
152 Ga0316577_10053409
153 Ga0316577_10124031
154 Ga0307406_10000623
155 Ga0316583_10008178
156 Ga0316580_10002080
157 Ga0316593_10000173
158 Ga0316593_10000692
159 Ga0316596_1000453
160 Ga0316574_0002915
161 Ga0316574_0006469
162 Ga0316574_0010566
163 Ga0316574_0023734
164 Ga0316574_0031641
165 Ga0316574_0041829
166 Ga0316574_0058063
167 Ga0316574_0074630
168 Ga0316574_0144736
169 Ga0373927_0088847
170 Ga0373927_0151443
171 Ga0373937_0364202
172 Ga0316582_0001677
173 Ga0316582_0005992
174 Ga0316582_0014581
175 Ga0316582_0047810
176 Ga0316582_0050172
177 Ga0316582_0124315
178 Ga0316582_0292166
179 Ga0316584_0001792
180 Ga0316584_0007321
181 Ga0316584_0020194
182 Ga0316584_0035541
183 Ga0316584_0044141
184 Ga0316584_0166557
185 Ga0316581_0005717
186 Ga0400484_07893
187 Ga0400484_22999
188 Ga0400484_26336
189 Ga0400484_30145
190 Ga0400484_31844
191 Ga0400490_24671
192 Ga0400490_26919
193 Ga0400490_29153
194 Ga0400490_52271
195 Ga0400490_55744
196 Ga0400490_56804
197 Ga0400491_26238
198 Ga0400485_02890
199 Ga0400485_04462
200 Ga0400488_14598
201 Ga0400488_15012
202 Ga0400488_61323
203 Ga0400488_62726
204 Ga0400486_00114
205 Ga0400486_08527
206 Ga0400486_14851
207 Ga0400486_18909
208 Ga0400483_004216
209 Ga0400483_031978
210 Ga0400483_032262
211 Ga0400483_036995
212 Ga0400483_046240
213 Ga0400483_088306
214 Ga0400483_088745
215 Ga0400483_147134
216 Ga0400483_179583
217 Ga0400483_194190
218 Ga0400483_239353
219 Ga0400483_248491
220 Ga0400483_249569
221 Ga0400483_265474
222 Ga0400489_12713
223 Ga0400487_14076
224 Ga0400487_31065
225 Ga0400487_46408
226 Ga0400487_54961
227 Ga0400487_60767
228 Ga0436365_0099942
229 Ga0453684_0001981
230 Ga0495580_0015198
231 Ga0501034_0149115
232 nmdc:mga03n38_231_c1
233 nmdc:mga00v17_24423_c1
234 nmdc:mga00v17_406_c2
235 nmdc:mga00v17_94_c1
236 nmdc:mga0yw44_86_c1
237 nmdc:mga06z11_350_c1
238 nmdc:mga04h51_9535_c1
239 nmdc:mga07m45_364_c1
240 nmdc:mga0n895_8768_c1
241 nmdc:mga0sz30_89_c1
242 2738715434

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02684

LpxB

Lipid-A-disaccharide synthetase

34

405

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5w8s-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations 0.7537 5 377
5w8x-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations-bound to udp 0.7531 5 377
5w8n-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-6 solubilizing mutations 0.7494 5 377
5w8x-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations-bound to udp 0.7452 5 377
5w8s-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations 0.7439 5 377
ID Description Score Start End Superfamily
af_P10441_9_377_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9794 8 373 3.40.50.2000
af_P10441_9_377_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.969 8 373 3.40.50.2000
af_K7KRG7_210_378_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7707 189 359 3.40.50.2000
af_F4IF99_42_436_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7415 8 364 3.40.50.2000
4x6lA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7338 189 357 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A3B0YUY6-F1-model_v4 lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9879 5 380 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A7C1UMM6-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9841 5 378 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A2J4QCW7-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9837 5 108 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A2E2JZM8-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9835 81 378 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A7L9RAS1-F1-model_v4 deleted 0.9821 5 380

Map