F106790

General Info

Members Datasets Scaffolds Average Seq Length
120 29 240 162

Family's Representative Sequence

Representative Sequence 3300036712|Ga0316584_0664364|Ga0316584_0664364_10_588
Length 180
Sequence LDWFKKDEDFFIFLNGKKEISKNKRRRFMSKTEQNLQEAFAGESQANRKYLAFAQKADTEGHAQVARLFRAARTLKGVGSTADNLKEAIAGETHEFKNMYPAMIEDAKAEGEKAALRSFTYANDVEKVHAELYTKALDNLDSMEEVDYWVCNVCGYTCEGEPPDECPVCKAKKKAFFKVD

Samples

Sample ID Description Type Environment
1 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
2 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
3 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
4 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
5 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
6 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
7 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
8 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
9 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
10 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
11 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
12 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
13 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
15 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
16 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
17 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
18 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
19 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
20 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
21 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
22 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
23 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
24 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
25 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
26 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
27 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
28 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
29 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 66.67
Metatranscriptomes 33.33
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 84.17
Stem 0
Stem Tuber 0
Unclassified 16.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316584_0664364 3300036712 Bacteria 717
2 Ga0316575_10022921 3300031665 Unclassified 2411
3 Ga0316575_10052273 3300031665 Bacteria 1627
4 Ga0316575_10094625 3300031665 Unclassified 1212
5 Ga0316579_10023576 3300031691 Bacteria 2764
6 Ga0316579_10044633 3300031691 Unclassified 2065
7 Ga0316576_10092483 3300031727 Unclassified 2254
8 Ga0316576_10153488 3300031727 Bacteria 1735
9 Ga0316578_10005918 3300031728 Bacteria 5984
10 Ga0316578_10248079 3300031728 Bacteria 1068
11 Ga0316577_10003960 3300031733 Bacteria 7574
12 Ga0316577_10042802 3300031733 Bacteria 2534
13 Ga0316577_10068003 3300031733 Bacteria 1989
14 Ga0316577_10075672 3300031733 Bacteria 1879
15 Ga0316577_10271660 3300031733 Bacteria 959
16 Ga0316577_10349007 3300031733 Unclassified 840
17 Ga0316577_10458382 3300031733 Bacteria 724
18 Ga0316585_10035391 3300032137 Bacteria 1582
19 Ga0316585_10087200 3300032137 Bacteria 1019
20 Ga0316585_10199639 3300032137 Bacteria 661
21 Ga0316593_10001031 3300032168 Bacteria 5784
22 Ga0316593_10020683 3300032168 Bacteria 2049
23 Ga0316593_10024378 3300032168 Unclassified 1917
24 Ga0316593_10027374 3300032168 Bacteria 1829
25 Ga0316593_10040812 3300032168 Bacteria 1543
26 Ga0316593_10055323 3300032168 Bacteria 1348
27 Ga0316593_10077677 3300032168 Bacteria 1155
28 Ga0316593_10078643 3300032168 Bacteria 1149
29 Ga0316593_10174125 3300032168 Bacteria 789
30 Ga0316593_10175385 3300032168 Unclassified 787
31 Ga0316593_10186694 3300032168 Archaea 763
32 Ga0316593_10200689 3300032168 Bacteria 737
33 Ga0316593_10221720 3300032168 Unclassified 703
34 Ga0316593_10252092 3300032168 Bacteria 661
35 Ga0316592_1033780 3300033524 Bacteria 1119
36 Ga0316592_1048223 3300033524 Bacteria 949
37 Ga0316592_1064793 3300033524 Bacteria 823
38 Ga0316592_1099860 3300033524 Bacteria 667
39 Ga0316592_1104870 3300033524 Bacteria 652
40 Ga0316586_1017213 3300033527 Bacteria 1165
41 Ga0316588_1059598 3300033528 Bacteria 931
42 Ga0316588_1139434 3300033528 Unclassified 619
43 Ga0316587_1069471 3300033529 Bacteria 659
44 Ga0316596_1014785 3300033541 Unclassified 1939
45 Ga0316596_1029309 3300033541 Unclassified 1424
46 Ga0316596_1032154 3300033541 Bacteria 1365
47 Ga0316596_1038568 3300033541 Bacteria 1252
48 Ga0316596_1042420 3300033541 Bacteria 1197
49 Ga0316596_1045960 3300033541 Bacteria 1152
50 Ga0316596_1046612 3300033541 Bacteria 1145
51 Ga0316596_1050015 3300033541 Unclassified 1105
52 Ga0316596_1051958 3300033541 Bacteria 1085
53 Ga0316596_1066509 3300033541 Bacteria 964
54 Ga0316596_1070761 3300033541 Bacteria 934
55 Ga0316596_1075938 3300033541 Unclassified 901
56 Ga0316596_1094149 3300033541 Bacteria 808
57 Ga0316596_1112908 3300033541 Unclassified 738
58 Ga0316596_1166311 3300033541 Bacteria 608
59 Ga0316596_1181746 3300033541 Bacteria 582
60 Ga0316596_1197090 3300033541 Bacteria 560
61 Ga0316574_0009776 3300035398 Bacteria 5389
62 Ga0316574_0053824 3300035398 Unclassified 2513
63 Ga0316574_0078712 3300035398 Bacteria 2090
64 Ga0316582_0013681 3300036647 Bacteria 4576
65 Ga0316582_0223596 3300036647 Bacteria 1287
66 Ga0316582_0268923 3300036647 Bacteria 1169
67 Ga0316584_0002301 3300036712 Bacteria 12022
68 Ga0316584_0046652 3300036712 Bacteria 3236
69 Ga0316584_0321602 3300036712 Bacteria 1116
70 Ga0316584_0606384 3300036712 Bacteria 759
71 Ga0316581_0006687 3300037588 Unclassified 3064
72 Ga0316581_0133694 3300037588 Bacteria 765
73 Ga0400484_10791 3300038725 Bacteria 4857
74 Ga0400484_18993 3300038725 Unclassified 1066
75 Ga0400484_31111 3300038725 Bacteria 5246
76 Ga0400490_06475 3300038726 Bacteria 6296
77 Ga0400490_11374 3300038726 Bacteria 30248
78 Ga0400490_14365 3300038726 Bacteria 1103
79 Ga0400490_42371 3300038726 Bacteria 5317
80 Ga0400490_55395 3300038726 Bacteria 94145
81 Ga0400491_09988 3300038727 Bacteria 8365
82 Ga0400485_22242 3300038735 Bacteria 10625
83 Ga0400488_00836 3300038741 Unclassified 1258
84 Ga0400488_29644 3300038741 Bacteria 8127
85 Ga0400486_31955 3300038742 Bacteria 54509
86 Ga0400483_068728 3300039062 Bacteria 13344
87 Ga0400483_112447 3300039062 Bacteria 15499
88 Ga0400483_262585 3300039062 Bacteria 6367
89 Ga0400489_60006 3300039093 Unclassified 3322
90 Ga0400489_84445 3300039093 Bacteria 134260
91 Ga0400487_23933 3300039110 Bacteria 15933
92 Ga0451577_0000328 3300042876 Bacteria 88518
93 Ga0451577_0001783 3300042876 Bacteria 27612
94 Ga0451577_0051171 3300042876 Bacteria 3688
95 Ga0451577_0095173 3300042876 Bacteria 2659
96 Ga0451577_0280015 3300042876 Bacteria 1511
97 Ga0451577_0411654 3300042876 Unclassified 1227
98 Ga0453683_0005622 3300044673 Bacteria 8712
99 Ga0453683_0014062 3300044673 Bacteria 5206
100 Ga0453683_0015052 3300044673 Bacteria 5020
101 Ga0453683_0061077 3300044673 Bacteria 2357
102 Ga0453683_0179103 3300044673 Bacteria 1344
103 Ga0453683_0391850 3300044673 Bacteria 895
104 Ga0453684_0000140 3300044712 Bacteria 319864
105 Ga0453684_0000950 3300044712 Bacteria 95538
106 Ga0453684_0001112 3300044712 Bacteria 84448
107 Ga0453684_0006589 3300044712 Bacteria 21965
108 Ga0453684_0009678 3300044712 Bacteria 16783
109 Ga0453684_0017719 3300044712 Bacteria 11002
110 Ga0453684_0028223 3300044712 Bacteria 8019
111 Ga0453684_0079664 3300044712 Bacteria 4094
112 Ga0453684_0262179 3300044712 Bacteria 1979
113 Ga0453684_0579819 3300044712 Archaea 1232
114 Ga0453684_0914519 3300044712 Bacteria 939
115 Ga0451576_0002757 3300045051 Bacteria 25427
116 Ga0451576_0069719 3300045051 Bacteria 3659
117 Ga0451576_0108368 3300045051 Bacteria 2890
118 Ga0451576_0118922 3300045051 Bacteria 2751
119 Ga0451576_0618022 3300045051 Bacteria 1139
120 Ga0451576_1050067 3300045051 Bacteria 853
121 Ga0316584_0664364
122 Ga0316575_10022921
123 Ga0316575_10052273
124 Ga0316575_10094625
125 Ga0316579_10023576
126 Ga0316579_10044633
127 Ga0316576_10092483
128 Ga0316576_10153488
129 Ga0316578_10005918
130 Ga0316578_10248079
131 Ga0316577_10003960
132 Ga0316577_10042802
133 Ga0316577_10068003
134 Ga0316577_10075672
135 Ga0316577_10271660
136 Ga0316577_10349007
137 Ga0316577_10458382
138 Ga0316585_10035391
139 Ga0316585_10087200
140 Ga0316585_10199639
141 Ga0316593_10001031
142 Ga0316593_10020683
143 Ga0316593_10024378
144 Ga0316593_10027374
145 Ga0316593_10040812
146 Ga0316593_10055323
147 Ga0316593_10077677
148 Ga0316593_10078643
149 Ga0316593_10174125
150 Ga0316593_10175385
151 Ga0316593_10186694
152 Ga0316593_10200689
153 Ga0316593_10221720
154 Ga0316593_10252092
155 Ga0316592_1033780
156 Ga0316592_1048223
157 Ga0316592_1064793
158 Ga0316592_1099860
159 Ga0316592_1104870
160 Ga0316586_1017213
161 Ga0316588_1059598
162 Ga0316588_1139434
163 Ga0316587_1069471
164 Ga0316596_1014785
165 Ga0316596_1029309
166 Ga0316596_1032154
167 Ga0316596_1038568
168 Ga0316596_1042420
169 Ga0316596_1045960
170 Ga0316596_1046612
171 Ga0316596_1050015
172 Ga0316596_1051958
173 Ga0316596_1066509
174 Ga0316596_1070761
175 Ga0316596_1075938
176 Ga0316596_1094149
177 Ga0316596_1112908
178 Ga0316596_1166311
179 Ga0316596_1181746
180 Ga0316596_1197090
181 Ga0316574_0009776
182 Ga0316574_0053824
183 Ga0316574_0078712
184 Ga0316582_0013681
185 Ga0316582_0223596
186 Ga0316582_0268923
187 Ga0316584_0002301
188 Ga0316584_0046652
189 Ga0316584_0321602
190 Ga0316584_0606384
191 Ga0316581_0006687
192 Ga0316581_0133694
193 Ga0400484_10791
194 Ga0400484_18993
195 Ga0400484_31111
196 Ga0400490_06475
197 Ga0400490_11374
198 Ga0400490_14365
199 Ga0400490_42371
200 Ga0400490_55395
201 Ga0400491_09988
202 Ga0400485_22242
203 Ga0400488_00836
204 Ga0400488_29644
205 Ga0400486_31955
206 Ga0400483_068728
207 Ga0400483_112447
208 Ga0400483_262585
209 Ga0400489_60006
210 Ga0400489_84445
211 Ga0400487_23933
212 Ga0451577_0000328
213 Ga0451577_0001783
214 Ga0451577_0051171
215 Ga0451577_0095173
216 Ga0451577_0280015
217 Ga0451577_0411654
218 Ga0453683_0005622
219 Ga0453683_0014062
220 Ga0453683_0015052
221 Ga0453683_0061077
222 Ga0453683_0179103
223 Ga0453683_0391850
224 Ga0453684_0000140
225 Ga0453684_0000950
226 Ga0453684_0001112
227 Ga0453684_0006589
228 Ga0453684_0009678
229 Ga0453684_0017719
230 Ga0453684_0028223
231 Ga0453684_0079664
232 Ga0453684_0262179
233 Ga0453684_0579819
234 Ga0453684_0914519
235 Ga0451576_0002757
236 Ga0451576_0069719
237 Ga0451576_0108368
238 Ga0451576_0118922
239 Ga0451576_0618022
240 Ga0451576_1050067

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02915

Rubrerythrin

Rubrerythrin

34

74

0.96

PF21349

RUBY_RBDX

Rubrerythrin, rubredoxin-like domain

149

177

0.96

PF02915

Rubrerythrin

Rubrerythrin

71

137

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4di0-assembly1.cif.gz_A the structure of rubrerythrin from burkholderia pseudomallei 0.97 2 122
7o91-assembly2.cif.gz_B dimn-sulerythrin 0.9612 2 123
1j30-assembly1.cif.gz_B the crystal structure of sulerythrin, a rubrerythrin-like protein from a strictly aerobic and thermoacidiphilic archaeon 0.9552 2 121
2hr5-assembly1.cif.gz_A pf1283- rubrerythrin from pyrococcus furiosus iron bound form 0.9386 1 159
7o91-assembly1.cif.gz_A dimn-sulerythrin 0.9354 2 128
ID Description Score Start End Superfamily
1nnqA01 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9821 1 125 1.20.1260.10
2hr5A01 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9807 1 125 1.20.1260.10
2hr5B01 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9803 1 125 1.20.1260.10
af_Q58156_13_77_1.20.1260.10 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.977 2 62 1.20.1260.10
3mpsA01 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9707 1 125 1.20.1260.10
ID Description Score Start End GO Terms
AF-A0A7C3WD16-F1-model_v4 Rubrerythrin family protein 1.006 1 74 GO:0016491
GO:0046872
AF-X1CHH4-F1-model_v4 Ferritin-like diiron domain-containing protein 1.003 1 56 GO:0016491
GO:0046872
AF-A0A7C1KRS6-F1-model_v4 Rubrerythrin family protein 0.9987 1 113 GO:0016491
GO:0046872
AF-X0T0C3-F1-model_v4 Ferritin-like diiron domain-containing protein 0.9977 1 65 GO:0016491
GO:0046872
AF-A0A7J3UI04-F1-model_v4 deleted 0.9973 1 85

Map