F098493

General Info

Members Datasets Scaffolds Average Seq Length
118 51 236 675

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0001613|Ga0453684_0001613_58296_60449
Length 707
Sequence LILNDKVQIYNEREHMSQNEILQKSADNIRILIASMVEKSKSGHPGGAMGGADFITILFSEYLRYDPTDMSWANRDRFFLDPGHMSPMLYSMLTMTGNYTIEDIKNFRQWGSVTPGHPEVDVKRGVENTSGPLGQGHAMALGAAITERFLAARFGEWLNHKTYAYISDGGIQEEISQGVGRLAGHLGLNNLIMFYDSNGIQLSSTTSDVTSEDTAQKYVAWGWNVITVDGHNFDQIRSALNNALAEKKRPTLIIGNTIMGKGARDASGGSFEGKVSTHGMPLSEAGASFPETVKNLGGNPDDPFVIFPEVKKFFDTVRQKKIEEWEKNNAALASKWRSFWSGQSPAVDWEKISHKAGLATRAASANILAVFASTVENMIVSSADLSNSDKTDGFLKNTKILKKGDFSGAFLQAGVAELTMAAVMNGMALHGGVIPVCATFFTFSDYMKPAFRLAALMELPVKYIFSHDAFRVGEDGPTHQPIEQETQIRLLEKMANLEGKRSMLVLRPADSAETTVSWKIALETHHEPVALLLSRQNIQDIVPETAGVSRFQDATRAYKGAYVVKDCAGQPDLILLGNGSEVATLIDGANILHKENGLNIRVLSVPSEGLFRGQDGKYQDEVLPFGIPVLGLTAGLPLNFESLVGPLGKSIGLERFGASAPYKILDEKFGYTARNVAVQAIGYLKEYNELLSRIAKIQVKERQFQTI

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
4 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
5 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
6 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
7 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
8 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
9 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
10 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
11 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
12 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
13 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
14 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
15 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
16 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
17 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
18 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
19 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
20 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
21 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
22 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
23 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
24 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
25 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
26 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
27 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
28 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
29 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
30 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
31 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
32 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
33 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
34 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
35 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
36 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
37 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
38 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
39 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
40 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
41 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
42 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
43 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
44 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
45 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
46 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
47 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
48 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
49 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
50 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
51 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.44
Metatranscriptomes 0.85
Isolates 12.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.54
Nodule 2.54
Rhizoplane 0
Rhizosphere 86.44
Stem 0
Stem Tuber 0
Unclassified 2.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0001613 3300044712 Bacteria 61905
2 Ga0065714_10003644 3300005288 Bacteria 11457
3 Ga0065714_10007608 3300005288 Bacteria 7397
4 Ga0099824_1007157 3300006942 Bacteria 14924
5 Ga0099826_10010234 3300006948 Bacteria 7023
6 Ga0105244_10000054 3300009036 Bacteria 133715
7 Ga0163161_10000091 3300017792 Bacteria 90927
8 Ga0207655_1000003 3300025728 Bacteria 1081376
9 Ga0207667_10022240 3300025949 Bacteria 7009
10 Ga0209489_110467 3300027361 Bacteria 10429
11 Ga0265337_1004417 3300028556 Bacteria 5838
12 Ga0265323_10000401 3300028653 Bacteria 24809
13 Ga0265336_10005172 3300028666 Bacteria 4847
14 Ga0265338_10001009 3300028800 Bacteria 47355
15 Ga0265338_10041437 3300028800 Bacteria 4306
16 Ga0265338_10075772 3300028800 Bacteria 2853
17 Ga0265327_10002152 3300031251 Bacteria 21718
18 Ga0265327_10045200 3300031251 Bacteria 2342
19 Ga0265316_10002229 3300031344 Bacteria 20326
20 Ga0265316_10002311 3300031344 Bacteria 19920
21 Ga0265316_10002872 3300031344 Bacteria 17634
22 Ga0307408_100012312 3300031548 Bacteria 5664
23 Ga0316575_10011011 3300031665 Bacteria 3337
24 Ga0316578_10031976 3300031728 Bacteria 3003
25 Ga0316577_10021455 3300031733 Bacteria 3583
26 Ga0307410_10000029 3300031852 Bacteria 50877
27 Ga0307406_10000012 3300031901 Bacteria 111189
28 Ga0307416_100002223 3300032002 Bacteria 11044
29 Ga0307414_10000001 3300032004 Bacteria 1352954
30 Ga0307414_10038183 3300032004 Bacteria 3222
31 Ga0307510_10043530 3300033180 Bacteria 4879
32 Ga0316587_1000992 3300033529 Bacteria 3279
33 Ga0316574_0033677 3300035398 Unclassified 3119
34 Ga0316582_0063122 3300036647 Bacteria 2380
35 Ga0316584_0000525 3300036712 Bacteria 20421
36 Ga0400483_082150 3300039062 Bacteria 21379
37 Ga0451577_0000064 3300042876 Bacteria 262482
38 Ga0451577_0000299 3300042876 Bacteria 96341
39 Ga0451577_0000568 3300042876 Bacteria 60186
40 Ga0451577_0001692 3300042876 Bacteria 28454
41 Ga0451577_0009317 3300042876 Bacteria 9465
42 Ga0451577_0015745 3300042876 Bacteria 7021
43 Ga0451577_0017833 3300042876 Bacteria 6549
44 Ga0451577_0020830 3300042876 Bacteria 6010
45 Ga0451577_0042382 3300042876 Bacteria 4083
46 Ga0451577_0076279 3300042876 Bacteria 2989
47 Ga0451577_0087247 3300042876 Bacteria 2784
48 Ga0451577_0115404 3300042876 Bacteria 2404
49 Ga0453683_0000148 3300044673 Bacteria 103686
50 Ga0453683_0000419 3300044673 Bacteria 49343
51 Ga0453683_0000449 3300044673 Bacteria 47293
52 Ga0453683_0004299 3300044673 Bacteria 10154
53 Ga0453683_0014764 3300044673 Bacteria 5068
54 Ga0453683_0064018 3300044673 Bacteria 2298
55 Ga0453683_0064196 3300044673 Bacteria 2295
56 Ga0453684_0000061 3300044712 Bacteria 489946
57 Ga0453684_0000148 3300044712 Bacteria 308453
58 Ga0453684_0000328 3300044712 Bacteria 199181
59 Ga0453684_0000469 3300044712 Bacteria 160413
60 Ga0453684_0000486 3300044712 Bacteria 156745
61 Ga0453684_0000529 3300044712 Bacteria 145936
62 Ga0453684_0000935 3300044712 Bacteria 96528
63 Ga0453684_0001121 3300044712 Bacteria 83919
64 Ga0453684_0001448 3300044712 Bacteria 67464
65 Ga0453684_0001666 3300044712 Bacteria 60186
66 Ga0453684_0002911 3300044712 Bacteria 40123
67 Ga0453684_0011314 3300044712 Bacteria 14999
68 Ga0453684_0011389 3300044712 Bacteria 14935
69 Ga0453684_0015127 3300044712 Bacteria 12243
70 Ga0453684_0021499 3300044712 Bacteria 9635
71 Ga0453684_0025339 3300044712 Bacteria 8617
72 Ga0453684_0027161 3300044712 Bacteria 8223
73 Ga0453684_0027756 3300044712 Bacteria 8103
74 Ga0453684_0040986 3300044712 Bacteria 6273
75 Ga0453684_0041749 3300044712 Bacteria 6196
76 Ga0453684_0052040 3300044712 Bacteria 5360
77 Ga0453684_0054160 3300044712 Bacteria 5228
78 Ga0453684_0061898 3300044712 Bacteria 4800
79 Ga0453684_0064558 3300044712 Bacteria 4676
80 Ga0453684_0094275 3300044712 Bacteria 3683
81 Ga0453684_0095033 3300044712 Bacteria 3665
82 Ga0453684_0108800 3300044712 Unclassified 3373
83 Ga0451576_0000190 3300045051 Bacteria 154484
84 Ga0451576_0000297 3300045051 Bacteria 120836
85 Ga0451576_0000433 3300045051 Bacteria 96361
86 Ga0451576_0000501 3300045051 Bacteria 85994
87 Ga0451576_0000832 3300045051 Bacteria 60186
88 Ga0451576_0001117 3300045051 Bacteria 48751
89 Ga0451576_0002093 3300045051 Bacteria 31120
90 Ga0451576_0002295 3300045051 Bacteria 29026
91 Ga0451576_0004896 3300045051 Bacteria 17110
92 Ga0451576_0005615 3300045051 Bacteria 15663
93 Ga0451576_0005847 3300045051 Bacteria 15275
94 Ga0451576_0007042 3300045051 Bacteria 13588
95 Ga0451576_0031737 3300045051 Bacteria 5631
96 Ga0451576_0034737 3300045051 Bacteria 5354
97 Ga0451576_0042154 3300045051 Bacteria 4819
98 Ga0451576_0090948 3300045051 Unclassified 3174
99 Ga0501249_000002 3300049679 Bacteria 262756
100 Ga0501044_0057640 3300049823 Bacteria 3986
101 Ga0500646_0001147 3300053090 Bacteria 7159
102 Ga0500641_0000033 3300053096 Bacteria 78369
103 Ga0500641_0001934 3300053096 Bacteria 7348
104 2513234763 2513020052 Bacteria 5120511
105 2520881678 2519899754 Bacteria 5336938
106 2644371342 2643221667 Bacteria 5627472
107 2738733858 2738541279 Bacteria 6149495
108 2738766185 2738541285 Bacteria 6150075
109 2739215439 2738543007 Bacteria 6149845
110 2817416958 2816332280 Bacteria 5109718
111 2833641073 2833640130 Bacteria 4858325
112 2857613834 2857613821 Bacteria 4917088
113 2903899494 2903895155 Bacteria 5258610
114 2904423762 2904419702 Bacteria 5166287
115 2919684124 2919683626 Bacteria 5534354
116 2929151339 2929150217 Bacteria 5462483
117 2958462472 2958458903 Bacteria 5301041
118 8056443776 8056440228 Bacteria 4946504
119 Ga0453684_0001613
120 Ga0065714_10003644
121 Ga0065714_10007608
122 Ga0099824_1007157
123 Ga0099826_10010234
124 Ga0105244_10000054
125 Ga0163161_10000091
126 Ga0207655_1000003
127 Ga0207667_10022240
128 Ga0209489_110467
129 Ga0265337_1004417
130 Ga0265323_10000401
131 Ga0265336_10005172
132 Ga0265338_10001009
133 Ga0265338_10041437
134 Ga0265338_10075772
135 Ga0265327_10002152
136 Ga0265327_10045200
137 Ga0265316_10002229
138 Ga0265316_10002311
139 Ga0265316_10002872
140 Ga0307408_100012312
141 Ga0316575_10011011
142 Ga0316578_10031976
143 Ga0316577_10021455
144 Ga0307410_10000029
145 Ga0307406_10000012
146 Ga0307416_100002223
147 Ga0307414_10000001
148 Ga0307414_10038183
149 Ga0307510_10043530
150 Ga0316587_1000992
151 Ga0316574_0033677
152 Ga0316582_0063122
153 Ga0316584_0000525
154 Ga0400483_082150
155 Ga0451577_0000064
156 Ga0451577_0000299
157 Ga0451577_0000568
158 Ga0451577_0001692
159 Ga0451577_0009317
160 Ga0451577_0015745
161 Ga0451577_0017833
162 Ga0451577_0020830
163 Ga0451577_0042382
164 Ga0451577_0076279
165 Ga0451577_0087247
166 Ga0451577_0115404
167 Ga0453683_0000148
168 Ga0453683_0000419
169 Ga0453683_0000449
170 Ga0453683_0004299
171 Ga0453683_0014764
172 Ga0453683_0064018
173 Ga0453683_0064196
174 Ga0453684_0000061
175 Ga0453684_0000148
176 Ga0453684_0000328
177 Ga0453684_0000469
178 Ga0453684_0000486
179 Ga0453684_0000529
180 Ga0453684_0000935
181 Ga0453684_0001121
182 Ga0453684_0001448
183 Ga0453684_0001666
184 Ga0453684_0002911
185 Ga0453684_0011314
186 Ga0453684_0011389
187 Ga0453684_0015127
188 Ga0453684_0021499
189 Ga0453684_0025339
190 Ga0453684_0027161
191 Ga0453684_0027756
192 Ga0453684_0040986
193 Ga0453684_0041749
194 Ga0453684_0052040
195 Ga0453684_0054160
196 Ga0453684_0061898
197 Ga0453684_0064558
198 Ga0453684_0094275
199 Ga0453684_0095033
200 Ga0453684_0108800
201 Ga0451576_0000190
202 Ga0451576_0000297
203 Ga0451576_0000433
204 Ga0451576_0000501
205 Ga0451576_0000832
206 Ga0451576_0001117
207 Ga0451576_0002093
208 Ga0451576_0002295
209 Ga0451576_0004896
210 Ga0451576_0005615
211 Ga0451576_0005847
212 Ga0451576_0007042
213 Ga0451576_0031737
214 Ga0451576_0034737
215 Ga0451576_0042154
216 Ga0451576_0090948
217 Ga0501249_000002
218 Ga0501044_0057640
219 Ga0500646_0001147
220 Ga0500641_0000033
221 Ga0500641_0001934
222 2513234763
223 2520881678
224 2644371342
225 2738733858
226 2738766185
227 2739215439
228 2817416958
229 2833641073
230 2857613834
231 2903899494
232 2904423762
233 2919684124
234 2929151339
235 2958462472
236 8056443776

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22613

Transketolase_C_1

Transketolase-like TK C-terminal domain

560

672

0.99

PF00456

Transketolase_N

Transketolase, thiamine diphosphate binding domain

21

339

0.94

PF02779

Transket_pyr

Transketolase, pyrimidine binding domain

356

540

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1r9j-assembly1.cif.gz_B transketolase from leishmania mexicana 0.9395 4 677
4c7v-assembly1.cif.gz_A apo transketolase from lactobacillus salivarius at 2.2a resolution 0.9381 1 675
4c7v-assembly1.cif.gz_A apo transketolase from lactobacillus salivarius at 2.2a resolution 0.9354 1 675
8cip-assembly2.cif.gz_D crystal structure of transketolase from geobacillus stearothermophilus 0.9326 4 676
7wrr-assembly2.cif.gz_D x-ray structure of thermus thermophilus hb8 transketorase in complex with tpp and mes 0.9318 5 669
ID Description Score Start End Superfamily
af_C6KSV3_9_337_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9416 7 332 3.40.50.970
3m7iA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9323 552 673 3.40.50.920
af_Q556J0_5_332_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.93 4 328 3.40.50.970
af_A0A1D6P5P4_1_115_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9282 156 267 3.40.50.970
4c7vA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9277 1 329 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A0S8HMP5-F1-model_v4 Transketolase 0.9863 1 228 GO:0004802
GO:0005829
GO:0006098
AF-A0A0A0DY20-F1-model_v4 deleted 0.9843 1 386
AF-A0A7X7AV34-F1-model_v4 Transketolase 0.9825 1 581 GO:0004802
GO:0005829
GO:0006098
GO:0046872
AF-A0A0A0DY20-F1-model_v4 deleted 0.9818 1 386
AF-A0A358M1Q4-F1-model_v4 deleted 0.9786 32 677

Map