F097464

General Info

Members Datasets Scaffolds Average Seq Length
118 110 109 286

Family's Representative Sequence

Representative Sequence 3300015690|Ga0183363_1035|Ga0183363_103525
Length 312
Sequence MKGIILAGGTGTRLHPATLVVNKQLLPVYDKPMIYYPLSALMLAGIRDILIISSPDYLPHYRTLFGDGSALGLTIAYAEQPAPEGLPQAFTIGRDWIAGQAVTLVLGDNIFFGNGLRTLLRRAVARIEAEGGATLFSYRVDDPERYGVIAFDDDGRAVLIEEKPEHPRSNQAVTGLYMFDAGVCDHAAALVPSARGELEITDLARCYMDAGTLHVEAMGRGFAWLDTGTHDSLLEAAEFVRTIQHRQGIQIACLEEIAYLQGFIPREAAEARGQALTKTAYGRAILTAIAEAPVHEDERRTAERRQPFTQVP

Samples

Sample ID Description Type Environment
1 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
2 2765235838 Herbaspirillum robiniae AA6 Isolate Unclassified
3 2860867994 Pseudomonas sp. R1-43-08 Isolate Rhizosphere
4 2881633906 Lactiplantibacillus garii FI11369 Isolate Unclassified
5 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
6 2929189879 Pseudomonas sp. R-71842 Hybrid assembly Isolate Unclassified
7 2946027586 Pseudomonas sp. W4I3 Isolate Rhizosphere
8 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
9 3300001432 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
10 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
11 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003575 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
14 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
15 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
16 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
22 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
23 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
28 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
34 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
37 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
38 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
39 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
40 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
41 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
42 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
43 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
44 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
45 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
46 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
47 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
48 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
49 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
50 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
51 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
52 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
53 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
54 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
55 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
56 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
57 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
58 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
59 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
60 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
61 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
62 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
63 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
64 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
65 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
66 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
67 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
68 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
69 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
70 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
71 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
72 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
73 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
74 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
75 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
76 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
83 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
84 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
85 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
86 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
87 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
88 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
95 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
98 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049682 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_B_3_drought Metagenome Rhizosphere
101 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
102 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
103 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
104 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
105 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
106 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
107 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
108 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
109 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
110 8018845410 Burkholderia reimsis BE51 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.53
Metatranscriptomes 0.85
Isolates 7.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.47
Nodule 1.69
Rhizoplane 1.69
Rhizosphere 73.73
Stem 0
Stem Tuber 0
Unclassified 14.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24034J14986_100585 3300001432 Bacteria 2152
2 JGI24739J22299_10005967 3300001989 Bacteria 4608
3 JGI24735J21928_10004550 3300002067 Bacteria 4659
4 rootL2_10001457 3300003322 Bacteria 117785
5 rootL2_10280545 3300003322 Bacteria 1971
6 Ga0007409J51694_1064574 3300003575 Bacteria 1426
7 Ga0055533_1003019 3300003756 Bacteria 3583
8 Ga0055532_1000191 3300003758 Bacteria 51347
9 Ga0055532_1000467 3300003758 Bacteria 18540
10 JGI25405J52794_10023739 3300003911 Bacteria 1249
11 Ga0065165_1002142 3300005262 Bacteria 17905
12 Ga0065712_10074858 3300005290 Bacteria 3992
13 Ga0070664_100075216 3300005564 Bacteria 2900
14 Ga0075370_10000995 3300006353 Bacteria 11706
15 Ga0099826_10000009 3300006948 Bacteria 336081
16 Ga0105251_10064081 3300009011 Bacteria 1723
17 Ga0105242_10000208 3300009176 Bacteria 45684
18 Ga0105238_10146107 3300009551 Bacteria 2341
19 Ga0157370_10588899 3300013104 Bacteria 1019
20 Ga0163162_10244850 3300013306 Bacteria 1924
21 Ga0157380_10546077 3300014326 Bacteria 1136
22 Ga0183363_1035 3300015690 Bacteria 46444
23 Ga0163161_10215243 3300017792 Bacteria 1486
24 Ga0209147_100378 3300025229 Bacteria 30960
25 Ga0207713_1050357 3300025735 Bacteria 1663
26 Ga0207649_10006885 3300025920 Bacteria 6177
27 Ga0209282_1000017 3300027666 Bacteria 191482
28 Ga0265327_10006606 3300031251 Bacteria 9219
29 Ga0307408_100082751 3300031548 Bacteria 2403
30 Ga0265314_10007209 3300031711 Bacteria 9675
31 Ga0373925_0082463 3300037068 Bacteria 2447
32 Ga0395899_0192354 3300037312 Bacteria 1427
33 Ga0395900_0625301 3300037418 Bacteria 1015
34 Ga0395905_0162594 3300037471 Bacteria 2098
35 Ga0436364_0683802 3300037853 Bacteria 2586
36 Ga0395901_0329237 3300038443 Bacteria 1579
37 Ga0436361_0547178 3300039447 Bacteria 17760
38 Ga0436363_0395010 3300039450 Bacteria 1050
39 Ga0439447_000384 3300041407 Bacteria 16142
40 Ga0439466_0000500 3300041411 Bacteria 14860
41 Ga0466972_0035165 3300044658 Bacteria 2452
42 Ga0453684_0002021 3300044712 Bacteria 51836
43 Ga0466971_0290776 3300044719 Bacteria 783
44 Ga0466960_0074120 3300044901 Bacteria 1700
45 Ga0466958_0340394 3300045836 Bacteria 965
46 Ga0495603_0068868 3300046455 Bacteria 2082
47 Ga0495650_0006037 3300046471 Bacteria 7656
48 Ga0495605_0001238 3300046474 Bacteria 17005
49 Ga0495584_0017917 3300046491 Bacteria 3602
50 Ga0495594_0027619 3300046499 Bacteria 3059
51 Ga0495596_0000070 3300046500 Bacteria 75962
52 Ga0495596_0019766 3300046500 Bacteria 2763
53 Ga0495607_0009015 3300046501 Bacteria 6782
54 Ga0495583_0011819 3300046506 Bacteria 4988
55 Ga0495606_0003991 3300046507 Bacteria 15084
56 Ga0495610_0000958 3300046512 Bacteria 26690
57 Ga0495616_0004025 3300046513 Bacteria 9341
58 Ga0495648_0003779 3300046524 Bacteria 13168
59 Ga0495654_0000267 3300046530 Bacteria 47487
60 Ga0495597_0058920 3300046542 Bacteria 1677
61 Ga0495625_0179756 3300046660 Bacteria 1408
62 Ga0495635_0102341 3300046663 Bacteria 1958
63 Ga0495661_0003409 3300046665 Bacteria 11750
64 Ga0495661_0116862 3300046665 Bacteria 1479
65 Ga0495669_0008846 3300046684 Bacteria 4243
66 Ga0495613_0000243 3300046689 Bacteria 51628
67 Ga0495671_0000276 3300046692 Bacteria 42984
68 Ga0495649_0030000 3300046694 Bacteria 3004
69 Ga0495649_0052672 3300046694 Bacteria 2205
70 Ga0495672_0001841 3300047320 Bacteria 20247
71 Ga0495683_0029031 3300047323 Bacteria 2827
72 Ga0495626_0000699 3300048091 Bacteria 31942
73 Ga0496109_0217954 3300048912 Bacteria 1795
74 Ga0496114_0616789 3300048917 Bacteria 956
75 Ga0496116_0123273 3300048919 Bacteria 1494
76 Ga0496117_0071025 3300048920 Bacteria 2335
77 Ga0496118_0009602 3300048921 Bacteria 9740
78 Ga0496121_0003121 3300048924 Bacteria 23927
79 Ga0496122_0000184 3300048925 Bacteria 144437
80 Ga0496122_0002935 3300048925 Bacteria 23260
81 Ga0496123_0000208 3300048926 Bacteria 119807
82 Ga0496125_0056262 3300048928 Bacteria 3196
83 Ga0495682_0136282 3300049460 Bacteria 877
84 Ga0501290_001430 3300049513 Bacteria 3270
85 Ga0501294_011316 3300049517 Bacteria 887
86 Ga0501296_003050 3300049519 Bacteria 1777
87 Ga0501036_0095161 3300049572 Bacteria 2518
88 Ga0501040_0125237 3300049576 Bacteria 1805
89 Ga0501041_0301444 3300049577 Bacteria 1010
90 Ga0501042_0388417 3300049578 Bacteria 1011
91 Ga0501048_0117072 3300049582 Bacteria 1882
92 Ga0501068_0399876 3300049584 Bacteria 886
93 Ga0501071_0184951 3300049587 Bacteria 1562
94 Ga0501072_0093316 3300049588 Bacteria 2391
95 Ga0501072_0133880 3300049588 Bacteria 1976
96 Ga0501074_0381560 3300049590 Bacteria 1000
97 Ga0501075_0150720 3300049591 Bacteria 1773
98 Ga0501076_0103716 3300049592 Bacteria 2294
99 Ga0501252_014565 3300049682 Bacteria 973
100 Ga0501234_004826 3300049707 Bacteria 2115
101 Ga0501079_0174760 3300049741 Bacteria 1675
102 Ga0501045_0139356 3300049824 Bacteria 1804
103 Ga0495601_0084386 3300053077 Bacteria 2040
104 Ga0500647_0081131 3300053091 Bacteria 1556
105 Ga0500641_0000838 3300053096 Bacteria 11089
106 Ga0500588_0000031 3300053146 Bacteria 29007
107 Ga0500627_0008924 3300053158 Bacteria 3586
108 Ga0530510_0064438 3300061734 Bacteria 2654
109 Ga0530510_0102660 3300061734 Bacteria 2091

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044719 Ga0466971_0290776 Ga0466971_0290776_13_660 215
2 3300048917 Ga0496114_0616789 Ga0496114_0616789_190_945 222
3 3300041411 Ga0439466_0000500 Ga0439466_0000500_16_702 225
4 3300048091 Ga0495626_0000699 Ga0495626_0000699_10_750 243
5 3300003322 rootL2_10001457 rootL2_10001457100 247
6 3300041407 Ga0439447_000384 Ga0439447_000384_15378_16130 247
7 3300049517 Ga0501294_011316 Ga0501294_011316_11_766 247
8 3300049592 Ga0501076_0103716 Ga0501076_0103716_1487_2278 247
9 3300049590 Ga0501074_0381560 Ga0501074_0381560_82_855 254
10 3300044712 Ga0453684_0002021 Ga0453684_0002021_38319_39194 255
11 3300045836 Ga0466958_0340394 Ga0466958_0340394_183_950 255
12 3300046663 Ga0495635_0102341 Ga0495635_0102341_75_842 255
13 3300013104 Ga0157370_10588899 Ga0157370_105888991 256
14 3300046660 Ga0495625_0179756 Ga0495625_0179756_27_797 256
15 3300047323 Ga0495683_0029031 Ga0495683_0029031_11_790 256
16 3300049577 Ga0501041_0301444 Ga0501041_0301444_221_1000 256
17 3300049578 Ga0501042_0388417 Ga0501042_0388417_172_990 256
18 3300049682 Ga0501252_014565 Ga0501252_014565_157_939 256
19 3300049584 Ga0501068_0399876 Ga0501068_0399876_74_862 259
20 3300046499 Ga0495594_0027619 Ga0495594_0027619_886_1683 261
21 3300037312 Ga0395899_0192354 Ga0395899_0192354_22_810 262
22 3300037418 Ga0395900_0625301 Ga0395900_0625301_14_802 262
23 3300046506 Ga0495583_0011819 Ga0495583_0011819_4089_4973 262
24 3300046665 Ga0495661_0003409 Ga0495661_0003409_10948_11736 262
25 3300046694 Ga0495649_0052672 Ga0495649_0052672_1382_2170 262
26 3300049460 Ga0495682_0136282 Ga0495682_0136282_17_805 262
27 3300046491 Ga0495584_0017917 Ga0495584_0017917_1668_2495 271
28 3300038443 Ga0395901_0329237 Ga0395901_0329237_21_845 274
29 3300049707 Ga0501234_004826 Ga0501234_004826_428_1294 283
30 3300048912 Ga0496109_0217954 Ga0496109_0217954_443_1315 284
31 iso_pu_bacteria 2881633906 2881636687 284
32 iso_pu_bacteria 2928027323 2928029986 284
33 iso_pu_bacteria 2990196909 2990197594 284
34 iso_pu_bacteria 2860867994 2860868295 285
35 iso_pu_bacteria 2929189879 2929190156 285
36 iso_pu_bacteria 2946027586 2946028496 285
37 3300049572 Ga0501036_0095161 Ga0501036_0095161_828_1697 286
38 3300049576 Ga0501040_0125237 Ga0501040_0125237_808_1677 286
39 3300049587 Ga0501071_0184951 Ga0501071_0184951_564_1433 286
40 3300049588 Ga0501072_0093316 Ga0501072_0093316_566_1435 286
41 3300049591 Ga0501075_0150720 Ga0501075_0150720_746_1615 286
42 3300049741 Ga0501079_0174760 Ga0501079_0174760_150_1019 286
43 3300049824 Ga0501045_0139356 Ga0501045_0139356_468_1337 286
44 3300061734 Ga0530510_0064438 Ga0530510_0064438_453_1322 286
45 iso_pu_bacteria 2582581299 2585228089 286
46 iso_pu_bacteria 8018845410 8018849977 286
47 3300003322 rootL2_10280545 rootL2_102805452 287
48 3300003575 Ga0007409J51694_1064574 Ga0007409J51694_10645741 287
49 3300005564 Ga0070664_100075216 Ga0070664_1000752162 287
50 3300046500 Ga0495596_0019766 Ga0495596_0019766_888_1766 287
51 3300046665 Ga0495661_0116862 Ga0495661_0116862_321_1202 287
52 3300053096 Ga0500641_0000838 Ga0500641_0000838_7790_8653 287
53 3300001432 JGI24034J14986_100585 JGI24034J14986_1005852 288
54 3300001989 JGI24739J22299_10005967 JGI24739J22299_100059675 288
55 3300002067 JGI24735J21928_10004550 JGI24735J21928_100045503 288
56 3300003756 Ga0055533_1003019 Ga0055533_10030193 288
57 3300003758 Ga0055532_1000191 Ga0055532_100019112 288
58 3300003758 Ga0055532_1000467 Ga0055532_100046711 288
59 3300003911 JGI25405J52794_10023739 JGI25405J52794_100237392 288
60 3300005262 Ga0065165_1002142 Ga0065165_10021426 288
61 3300005290 Ga0065712_10074858 Ga0065712_100748583 288
62 3300006353 Ga0075370_10000995 Ga0075370_100009956 288
63 3300006948 Ga0099826_10000009 Ga0099826_10000009194 288
64 3300009011 Ga0105251_10064081 Ga0105251_100640812 288
65 3300009176 Ga0105242_10000208 Ga0105242_1000020840 288
66 3300009551 Ga0105238_10146107 Ga0105238_101461073 288
67 3300013306 Ga0163162_10244850 Ga0163162_102448502 288
68 3300014326 Ga0157380_10546077 Ga0157380_105460772 288
69 3300015690 Ga0183363_1035 Ga0183363_103525 288
70 3300017792 Ga0163161_10215243 Ga0163161_102152432 288
71 3300025229 Ga0209147_100378 Ga0209147_1003786 288
72 3300025735 Ga0207713_1050357 Ga0207713_10503572 288
73 3300025920 Ga0207649_10006885 Ga0207649_100068857 288
74 3300027666 Ga0209282_1000017 Ga0209282_1000017100 288
75 3300031251 Ga0265327_10006606 Ga0265327_100066066 288
76 3300031548 Ga0307408_100082751 Ga0307408_1000827512 288
77 3300031711 Ga0265314_10007209 Ga0265314_100072098 288
78 3300037068 Ga0373925_0082463 Ga0373925_0082463_222_1154 288
79 3300037471 Ga0395905_0162594 Ga0395905_0162594_560_1468 288
80 3300037853 Ga0436364_0683802 Ga0436364_0683802_757_1686 288
81 3300039447 Ga0436361_0547178 Ga0436361_0547178_11959_12831 288
82 3300039450 Ga0436363_0395010 Ga0436363_0395010_47_922 288
83 3300044658 Ga0466972_0035165 Ga0466972_0035165_247_1128 288
84 3300044901 Ga0466960_0074120 Ga0466960_0074120_604_1512 288
85 3300046455 Ga0495603_0068868 Ga0495603_0068868_820_1740 288
86 3300046471 Ga0495650_0006037 Ga0495650_0006037_1081_1962 288
87 3300046474 Ga0495605_0001238 Ga0495605_0001238_14866_15753 288
88 3300046500 Ga0495596_0000070 Ga0495596_0000070_8014_8901 288
89 3300046501 Ga0495607_0009015 Ga0495607_0009015_2573_3460 288
90 3300046507 Ga0495606_0003991 Ga0495606_0003991_2354_3235 288
91 3300046512 Ga0495610_0000958 Ga0495610_0000958_14632_15519 288
92 3300046513 Ga0495616_0004025 Ga0495616_0004025_6938_7825 288
93 3300046524 Ga0495648_0003779 Ga0495648_0003779_2303_3190 288
94 3300046530 Ga0495654_0000267 Ga0495654_0000267_43771_44679 288
95 3300046542 Ga0495597_0058920 Ga0495597_0058920_419_1306 288
96 3300046684 Ga0495669_0008846 Ga0495669_0008846_1501_2388 288
97 3300046689 Ga0495613_0000243 Ga0495613_0000243_20646_21551 288
98 3300046692 Ga0495671_0000276 Ga0495671_0000276_14983_15870 288
99 3300046694 Ga0495649_0030000 Ga0495649_0030000_314_1201 288
100 3300047320 Ga0495672_0001841 Ga0495672_0001841_4410_5297 288
101 3300048919 Ga0496116_0123273 Ga0496116_0123273_236_1123 288
102 3300048920 Ga0496117_0071025 Ga0496117_0071025_1342_2214 288
103 3300048921 Ga0496118_0009602 Ga0496118_0009602_3385_4257 288
104 3300048924 Ga0496121_0003121 Ga0496121_0003121_14768_15655 288
105 3300048925 Ga0496122_0000184 Ga0496122_0000184_116382_117269 288
106 3300048925 Ga0496122_0002935 Ga0496122_0002935_14931_15818 288
107 3300048926 Ga0496123_0000208 Ga0496123_0000208_64329_65216 288
108 3300048928 Ga0496125_0056262 Ga0496125_0056262_1882_2769 288
109 3300049513 Ga0501290_001430 Ga0501290_001430_991_1866 288
110 3300049519 Ga0501296_003050 Ga0501296_003050_152_1033 288
111 3300049582 Ga0501048_0117072 Ga0501048_0117072_186_1100 288
112 3300049588 Ga0501072_0133880 Ga0501072_0133880_28_942 288
113 3300053077 Ga0495601_0084386 Ga0495601_0084386_913_1842 288
114 3300053091 Ga0500647_0081131 Ga0500647_0081131_608_1504 288
115 3300053146 Ga0500588_0000031 Ga0500588_0000031_12108_13001 288
116 3300053158 Ga0500627_0008924 Ga0500627_0008924_402_1328 288
117 3300061734 Ga0530510_0102660 Ga0530510_0102660_183_1061 288
118 iso_pu_bacteria 2765235838 2765571510 288

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00483

NTP_transferase

Nucleotidyl transferase

2

243

0.98

PF12804

NTP_transf_3

MobA-like NTP transferase domain

3

307

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hoc-assembly2.cif.gz_B crystal structure of glucose 1-phosphate thymidylyltransferase from aneurinibacillus thermoaerophilus complexed with udp-n-acetylglucosamine 0.9884 1 286
4hoc-assembly1.cif.gz_A crystal structure of glucose 1-phosphate thymidylyltransferase from aneurinibacillus thermoaerophilus complexed with udp-n-acetylglucosamine 0.9882 1 288
4b42-assembly2.cif.gz_B-3 pseudomonas aeruginosa rmla in complex with allosteric inhibitor 0.9863 2 285
5ftv-assembly2.cif.gz_C pseudomonas aeruginosa rmla in complex with allosteric inhibitor 0.9862 2 288
4b4b-assembly1.cif.gz_B-2 pseudomonas aeruginosa rmla in complex with allosteric inhibitor 0.9858 2 288
ID Description Score Start End Superfamily
4b2xA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9854 2 288 3.90.550.10
4b2xA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9787 2 288 3.90.550.10
4ecmA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9521 1 238 3.90.550.10
4ecmA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9071 1 238 3.90.550.10
af_Q58501_1_209_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.874 1 225 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A357I8C9-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9981 31 137 GO:0008879
GO:0045226
AF-A0A6I3TEG1-F1-model_v4 deleted 0.9969 14 126
AF-A0A336Q728-F1-model_v4 deleted 0.9954 26 287
AF-A0A2S7K859-F1-model_v4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9941 1 288 GO:0008879
GO:0045226
GO:0046872
AF-A0A3B9KKS4-F1-model_v4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9937 1 288 GO:0008879
GO:0045226
GO:0046872

Feature Viewer

pLDDT pTM Quality
94.3 0.92 High
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Predicted Structure (AlphaFold2)

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