F095220

General Info

Members Datasets Scaffolds Average Seq Length
117 89 100 307

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|641522639|641641983
Length 355
Sequence GLQRRHDFVLYFDVTNGNPNGDPDAGNMPRMDPETGHGLVSDVCLKRKVRNYVEMAAEADGRDPIRNRIYVTEGAVLNEKHREAYLALRPDDPKARTDKKLTPKSDEEAVLIRRFMCDNFFDIRTFGAVLSTGINAGQVRGPVQVSFARSVEPVLPLEVSITRMAATNEAERNERQDGEDKAGKRGDKRTMGRKHMAATNEAERNERQDGDDEAEKRGDKRTMGRKHIVPYGLYRAHGYVSAPLASHPVKGTGFSDGDLALLFEALRNMFEHDRSATRGEMATRRLVVFRHASALGNAPAQSLFERVRTLRAHKGSVHEIGAPGTDNWPPARSFADYAITVDREGLPQGIEVTEW

Samples

Sample ID Description Type Environment
1 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
2 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
3 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
4 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
5 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
6 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
7 2855020534 Paracoccus endophyticus SYSUP0003 Isolate Stem Tuber
8 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
9 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
10 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
11 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
12 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
13 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
14 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
25 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
26 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
27 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
33 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
34 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
35 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
43 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
46 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
47 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
48 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
49 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
50 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
53 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
54 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
55 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
56 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
57 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
58 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
59 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
60 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
61 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
62 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
63 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
64 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
68 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
69 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
70 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
71 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
72 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
73 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
74 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
75 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
83 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
84 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
85 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
86 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
87 641522639 Methylobacterium sp. 4-46 Isolate Nodule
88 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
89 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 85.47
Metatranscriptomes 0
Isolates 14.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.71
Nodule 1.71
Rhizoplane 0
Rhizosphere 71.79
Stem 0
Stem Tuber 0.85
Unclassified 23.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25407J50210_10000454 3300003373 Bacteria 8084
2 Ga0070658_10109356 3300005327 Bacteria 2289
3 Ga0070683_100019141 3300005329 Bacteria 6077
4 Ga0070669_100000898 3300005353 Bacteria 21669
5 Ga0070669_100046580 3300005353 Bacteria 3162
6 Ga0070681_10058689 3300005458 Bacteria 3828
7 Ga0070699_100074293 3300005518 Bacteria 2958
8 Ga0070679_100158853 3300005530 Bacteria 2235
9 Ga0068862_100016530 3300005844 Bacteria 6143
10 Ga0068862_100159240 3300005844 Bacteria 2014
11 Ga0081538_10004237 3300005981 Bacteria 13309
12 Ga0081539_10006130 3300005985 Bacteria 11713
13 Ga0081539_10045394 3300005985 Bacteria 2527
14 Ga0075367_10124405 3300006178 Bacteria 1591
15 Ga0099794_10000888 3300007265 Bacteria 10101
16 Ga0105251_10003019 3300009011 Bacteria 12554
17 Ga0105250_10002158 3300009092 Bacteria 10096
18 Ga0105240_10073097 3300009093 Bacteria 4235
19 Ga0105240_10172715 3300009093 Unclassified 2558
20 Ga0114129_10488084 3300009147 Bacteria 1611
21 Ga0157370_10211504 3300013104 Bacteria 1797
22 Ga0157369_10017404 3300013105 Bacteria 8078
23 Ga0213876_10005303 3300021384 Bacteria 7094
24 Ga0213875_10000147 3300021388 Bacteria 74637
25 Ga0213875_10001103 3300021388 Bacteria 18734
26 Ga0213871_10004670 3300021441 Bacteria 2760
27 Ga0207696_1011588 3300025711 Bacteria 3165
28 Ga0207713_1001408 3300025735 Bacteria 19388
29 Ga0207707_10040641 3300025912 Bacteria 4062
30 Ga0207681_10000263 3300025923 Bacteria 40042
31 Ga0207681_10011186 3300025923 Bacteria 5510
32 Ga0207661_10060839 3300025944 Unclassified 3049
33 Ga0209588_1009494 3300027671 Bacteria 2910
34 Ga0268265_10115376 3300028380 Bacteria 2201
35 Ga0268265_10155171 3300028380 Bacteria 1936
36 Ga0265337_1011962 3300028556 Bacteria 2969
37 Ga0265318_10051973 3300028577 Bacteria 1538
38 Ga0265338_10046813 3300028800 Unclassified 3958
39 Ga0265338_10078518 3300028800 Bacteria 2784
40 Ga0265324_10001914 3300029957 Bacteria 11176
41 Ga0265328_10000114 3300031239 Bacteria 38034
42 Ga0265339_10003387 3300031249 Bacteria 11156
43 Ga0265316_10033549 3300031344 Bacteria 4179
44 Ga0265316_10174316 3300031344 Bacteria 1603
45 Ga0307508_10058474 3300031616 Bacteria 3411
46 Ga0395899_0000059 3300037312 Bacteria 213004
47 Ga0395900_0000017 3300037418 Bacteria 369602
48 Ga0395900_0144949 3300037418 Bacteria 2429
49 Ga0395898_0000030 3300037466 Bacteria 369577
50 Ga0395898_0001251 3300037466 Bacteria 37818
51 Ga0395905_0000056 3300037471 Bacteria 209230
52 Ga0436364_0147362 3300037853 Bacteria 6215
53 Ga0436364_0174617 3300037853 Bacteria 9877
54 Ga0436364_0602512 3300037853 Bacteria 1624
55 Ga0436364_0822297 3300037853 Bacteria 75298
56 Ga0436364_1233406 3300037853 Bacteria 2292
57 Ga0395901_0000015 3300038443 Bacteria 373388
58 Ga0395901_0013947 3300038443 Bacteria 8180
59 Ga0395901_0471976 3300038443 Bacteria 1281
60 Ga0400484_24807 3300038725 Bacteria 5658
61 Ga0400490_48968 3300038726 Bacteria 2897
62 Ga0400488_10314 3300038741 Bacteria 1425
63 Ga0436365_0661253 3300039437 Bacteria 7080
64 Ga0436360_0587431 3300039438 Bacteria 4786
65 Ga0451577_0012943 3300042876 Bacteria 7828
66 Ga0466972_0000190 3300044658 Bacteria 47256
67 Ga0453683_0001523 3300044673 Bacteria 19778
68 Ga0453683_0005736 3300044673 Bacteria 8615
69 Ga0453683_0056482 3300044673 Bacteria 2457
70 Ga0453683_0193145 3300044673 Bacteria 1292
71 Ga0453684_0000456 3300044712 Bacteria 164108
72 Ga0453684_0013181 3300044712 Bacteria 13475
73 Ga0453684_0049110 3300044712 Bacteria 5569
74 Ga0453684_0417196 3300044712 Bacteria 1500
75 Ga0451576_0003247 3300045051 Bacteria 22570
76 Ga0451576_0011928 3300045051 Bacteria 9820
77 Ga0466967_0377492 3300045976 Bacteria 1376
78 Ga0495629_0000001 3300046459 Bacteria 807972
79 Ga0495610_0000303 3300046512 Bacteria 51903
80 Ga0495643_0000341 3300046522 Bacteria 63337
81 Ga0495681_0107949 3300047470 Bacteria 1209
82 Ga0496116_0005551 3300048919 Bacteria 11636
83 Ga0496116_0020924 3300048919 Bacteria 4949
84 Ga0496121_0205122 3300048924 Bacteria 1401
85 Ga0496125_0030126 3300048928 Bacteria 4860
86 Ga0496126_0006171 3300048929 Bacteria 13417
87 Ga0501032_0014597 3300049569 Bacteria 5564
88 Ga0501043_0001631 3300049579 Bacteria 19514
89 Ga0501043_0029166 3300049579 Bacteria 4333
90 Ga0501046_0001796 3300049580 Bacteria 20471
91 Ga0501047_0000305 3300049581 Bacteria 56371
92 Ga0501048_0001348 3300049582 Bacteria 18627
93 Ga0501035_0002328 3300049822 Bacteria 18729
94 Ga0501035_0036703 3300049822 Bacteria 4441
95 Ga0501044_0023170 3300049823 Bacteria 6608
96 Ga0501045_0038323 3300049824 Bacteria 3486
97 nmdc:mga06z11_155816_c1 3300050494 Bacteria 1302
98 nmdc:mga05p37_106211_c1 3300050507 Bacteria 3454
99 nmdc:mga05p37_776227_c1 3300050507 Bacteria 1052
100 Ga0530510_0442784 3300061734 Bacteria 982

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044673 Ga0453683_0001523 Ga0453683_0001523_12037_12912 276
2 iso_pu_bacteria 2909399089 2909400838 277
3 3300038726 Ga0400490_48968 Ga0400490_48968_1298_2152 279
4 3300049569 Ga0501032_0014597 Ga0501032_0014597_3730_4701 279
5 iso_pu_bacteria 641228493 641334024 279
6 3300037853 Ga0436364_0174617 Ga0436364_0174617_8831_9805 280
7 3300046459 Ga0495629_0000001 Ga0495629_0000001_804536_805396 280
8 3300044673 Ga0453683_0056482 Ga0453683_0056482_1186_2043 281
9 3300044673 Ga0453683_0193145 Ga0453683_0193145_168_1028 281
10 3300044712 Ga0453684_0000456 Ga0453684_0000456_13558_14418 281
11 3300044712 Ga0453684_0417196 Ga0453684_0417196_253_1110 281
12 3300045051 Ga0451576_0003247 Ga0451576_0003247_18119_18979 281
13 iso_pu_bacteria 3003665799 3003667134 281
14 3300005985 Ga0081539_10006130 Ga0081539_100061306 283
15 3300044712 Ga0453684_0049110 Ga0453684_0049110_2971_3837 283
16 3300046512 Ga0495610_0000303 Ga0495610_0000303_47760_48692 283
17 3300046522 Ga0495643_0000341 Ga0495643_0000341_9065_9997 283
18 3300047470 Ga0495681_0107949 Ga0495681_0107949_176_1108 283
19 3300005518 Ga0070699_100074293 Ga0070699_1000742932 284
20 3300021388 Ga0213875_10001103 Ga0213875_1000110312 284
21 3300037853 Ga0436364_0147362 Ga0436364_0147362_386_1288 284
22 3300045051 Ga0451576_0011928 Ga0451576_0011928_2770_3639 284
23 3300048929 Ga0496126_0006171 Ga0496126_0006171_2761_3639 284
24 3300038725 Ga0400484_24807 Ga0400484_24807_599_1459 285
25 3300050507 nmdc:mga05p37_106211_c1 nmdc:mga05p37_106211_c1_2231_3103 285
26 iso_pu_bacteria 2524023129 2524189680 285
27 iso_pu_bacteria 2883577096 2883579781 285
28 iso_pu_bacteria 643348555 643391167 285
29 3300009092 Ga0105250_10002158 Ga0105250_100021585 286
30 3300025711 Ga0207696_1011588 Ga0207696_10115884 286
31 3300028800 Ga0265338_10078518 Ga0265338_100785183 286
32 3300031344 Ga0265316_10174316 Ga0265316_101743162 286
33 3300048919 Ga0496116_0020924 Ga0496116_0020924_1166_2047 286
34 3300048928 Ga0496125_0030126 Ga0496125_0030126_3395_4276 286
35 3300049579 Ga0501043_0001631 Ga0501043_0001631_3626_4582 286
36 3300049580 Ga0501046_0001796 Ga0501046_0001796_14933_15889 286
37 3300049581 Ga0501047_0000305 Ga0501047_0000305_47461_48417 286
38 3300049582 Ga0501048_0001348 Ga0501048_0001348_2909_3865 286
39 3300049824 Ga0501045_0038323 Ga0501045_0038323_2332_3288 286
40 3300005353 Ga0070669_100000898 Ga0070669_1000008986 287
41 3300005353 Ga0070669_100046580 Ga0070669_1000465803 287
42 3300005844 Ga0068862_100016530 Ga0068862_1000165303 287
43 3300009093 Ga0105240_10172715 Ga0105240_101727152 287
44 3300009147 Ga0114129_10488084 Ga0114129_104880841 287
45 3300025735 Ga0207713_1001408 Ga0207713_100140812 287
46 3300025923 Ga0207681_10000263 Ga0207681_1000026313 287
47 3300025923 Ga0207681_10011186 Ga0207681_100111863 287
48 3300028380 Ga0268265_10115376 Ga0268265_101153762 287
49 3300049579 Ga0501043_0029166 Ga0501043_0029166_2164_3117 287
50 3300049823 Ga0501044_0023170 Ga0501044_0023170_2774_3727 287
51 3300050507 nmdc:mga05p37_776227_c1 nmdc:mga05p37_776227_c1_103_999 287
52 3300009011 Ga0105251_10003019 Ga0105251_100030194 288
53 3300021441 Ga0213871_10004670 Ga0213871_100046702 288
54 3300028556 Ga0265337_1011962 Ga0265337_10119624 288
55 3300028577 Ga0265318_10051973 Ga0265318_100519732 288
56 3300028800 Ga0265338_10046813 Ga0265338_100468132 288
57 3300029957 Ga0265324_10001914 Ga0265324_100019146 288
58 3300031249 Ga0265339_10003387 Ga0265339_100033876 288
59 3300039438 Ga0436360_0587431 Ga0436360_0587431_566_1546 288
60 3300042876 Ga0451577_0012943 Ga0451577_0012943_2246_3133 288
61 3300044712 Ga0453684_0013181 Ga0453684_0013181_2425_3312 288
62 3300048919 Ga0496116_0005551 Ga0496116_0005551_8187_9122 288
63 3300048924 Ga0496121_0205122 Ga0496121_0205122_396_1331 288
64 3300005844 Ga0068862_100159240 Ga0068862_1001592402 289
65 3300006178 Ga0075367_10124405 Ga0075367_101244052 289
66 3300028380 Ga0268265_10155171 Ga0268265_101551712 289
67 3300031616 Ga0307508_10058474 Ga0307508_100584745 289
68 3300044673 Ga0453683_0005736 Ga0453683_0005736_2327_3220 289
69 3300049822 Ga0501035_0002328 Ga0501035_0002328_2745_3659 289
70 3300050494 nmdc:mga06z11_155816_c1 nmdc:mga06z11_155816_c1_149_1087 289
71 3300021388 Ga0213875_10000147 Ga0213875_1000014728 290
72 3300037466 Ga0395898_0001251 Ga0395898_0001251_32878_33831 290
73 3300037853 Ga0436364_0822297 Ga0436364_0822297_3145_4089 290
74 3300037853 Ga0436364_1233406 Ga0436364_1233406_1040_2017 290
75 3300038443 Ga0395901_0013947 Ga0395901_0013947_5588_6541 290
76 iso_pu_bacteria 2899259804 2899262276 290
77 iso_pu_bacteria 2855020534 2855023080 291
78 3300005327 Ga0070658_10109356 Ga0070658_101093562 292
79 3300005329 Ga0070683_100019141 Ga0070683_1000191414 292
80 3300025944 Ga0207661_10060839 Ga0207661_100608392 292
81 iso_pu_bacteria 2898795034 2898797151 292
82 3300061734 Ga0530510_0442784 Ga0530510_0442784_44_967 293
83 iso_pu_bacteria 2522572158 2523106934 293
84 iso_pu_bacteria 2643221550 2643770120 293
85 iso_pu_bacteria 8054002106 8054002556 293
86 3300021384 Ga0213876_10005303 Ga0213876_100053035 294
87 3300039437 Ga0436365_0661253 Ga0436365_0661253_2331_3278 294
88 iso_pu_bacteria 2545555834 2545673846 294
89 iso_pu_bacteria 641522639 641641983 294
90 3300031344 Ga0265316_10033549 Ga0265316_100335494 295
91 3300044658 Ga0466972_0000190 Ga0466972_0000190_43483_44478 295
92 3300005985 Ga0081539_10045394 Ga0081539_100453942 296
93 3300007265 Ga0099794_10000888 Ga0099794_100008884 296
94 3300009093 Ga0105240_10073097 Ga0105240_100730974 296
95 3300013104 Ga0157370_10211504 Ga0157370_102115042 296
96 3300013105 Ga0157369_10017404 Ga0157369_100174044 296
97 3300027671 Ga0209588_1009494 Ga0209588_10094943 296
98 3300031239 Ga0265328_10000114 Ga0265328_100001145 296
99 3300037312 Ga0395899_0000059 Ga0395899_0000059_205458_206411 296
100 3300037418 Ga0395900_0000017 Ga0395900_0000017_205458_206411 296
101 3300037466 Ga0395898_0000030 Ga0395898_0000030_205433_206386 296
102 3300037471 Ga0395905_0000056 Ga0395905_0000056_2820_3773 296
103 3300038443 Ga0395901_0000015 Ga0395901_0000015_163192_164145 296
104 3300038443 Ga0395901_0471976 Ga0395901_0471976_136_1089 296
105 3300038741 Ga0400488_10314 Ga0400488_10314_145_1101 296
106 3300037418 Ga0395900_0144949 Ga0395900_0144949_113_1069 297
107 3300037853 Ga0436364_0602512 Ga0436364_0602512_337_1305 297
108 3300049822 Ga0501035_0036703 Ga0501035_0036703_2913_3866 297
109 iso_pu_bacteria 2597490356 2599105435 298
110 iso_pu_bacteria 2846952575 2846954881 298
111 iso_pu_bacteria 2897803580 2897803586 298
112 3300005458 Ga0070681_10058689 Ga0070681_100586892 299
113 3300005530 Ga0070679_100158853 Ga0070679_1001588531 299
114 3300025912 Ga0207707_10040641 Ga0207707_100406412 299
115 3300045976 Ga0466967_0377492 Ga0466967_0377492_203_1126 301
116 3300003373 JGI25407J50210_10000454 JGI25407J50210_100004543 303
117 3300005981 Ga0081538_10004237 Ga0081538_100042378 303

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05107

Cas_Cas7

CRISPR-associated protein Cas7

4

202

0.89

PF05107

Cas_Cas7

CRISPR-associated protein Cas7

196

342

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7kha-assembly1.cif.gz_H cryo-em structure of the desulfovibrio vulgaris type i-c apo cascade 0.9087 10 303
7kha-assembly1.cif.gz_H cryo-em structure of the desulfovibrio vulgaris type i-c apo cascade 0.8936 10 303
8dex-assembly1.cif.gz_B type i-c cascade 0.8529 10 303
8dex-assembly1.cif.gz_B type i-c cascade 0.838 10 303
7xz3-assembly2.cif.gz_B crystal structure of the type i-b crispr-associated protein, csh2 from thermobaculum terrenum 0.7506 11 286
ID Description Score Start End Superfamily
af_Q9VQG6_10_230_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.4906 145 197 3.40.50.300
4uk7A00 Alpha Beta;2-Layer Sandwich;first zn-finger domain of poly(adp-ribose) polymerase-1;Ribosomal protein S26 0.4851 149 193 3.30.1740.20
af_Q923S8_35_176_3.30.420.510 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.462 142 201 3.30.420.510
af_F1QSP6_635_872_2.60.40.150 Mainly Beta;Sandwich;Immunoglobulin-like;C2 domain 0.4565 139 204 2.60.40.150
af_I1LUV4_145_295_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.4524 70 114 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A806GM64-F1-model_v4 deleted 0.9791 207 301
AF-A0A7C5VRE3-F1-model_v4 Uncharacterized protein 0.961 209 286 GO:0043571
AF-A0A349PSS4-F1-model_v4 Type I-C CRISPR-associated protein Cas7/Csd2 0.9563 213 303 GO:0043571
AF-A0A831TZW1-F1-model_v4 Type I-C CRISPR-associated protein Cas7/Csd2 0.9543 212 302 GO:0043571
AF-A0A7V8LGJ4-F1-model_v4 deleted 0.9441 212 301

Feature Viewer

pLDDT pTM Quality
86.36 0.84 High
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Predicted Structure (AlphaFold2)

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