F089501
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 116 | 55 | 232 | 782 |
Family's Representative Sequence
| Representative Sequence | 3300044712|Ga0453684_0155165|Ga0453684_0155165_96_2678 |
| Length | 860 |
| Sequence | VSFYANLTIFSHFKDYFMVDDTLNTGNVQSVDIDSQMREAYLDYAMSVIVARALPDARDGLKPVHRRILFAMHELGMRSNSAYKKSARIVGEVLGKYHPHGDSAVYESMARMAQDFSMRYLLVDGQGNFGSVDGDSPAAMRYTEARLQKMAEEMLADLEKDTVDFGPNFDDSLQEPLVLPARLPNLLLNGSSGIAVGMATNIPPQNLRELVGAINYLIDNYDNIEEVTVDDLMKFVPGPDFPTGGMIVGTEGIHAAYGTGRGRIVMRGIAHIEESKSGRYQINITEIPYQVNKSSLIERIAELVREDKIDQISDMRDESDQRGMSIVIELKRGAQPKKVLNQLYKYTALQSTFGVQMLSLVADENGRSEPRTLTLKRMLQIFIEHRQTVITRRSKFELAKAQARQHILDGYLIALNNIDAVIKTIREAEDADVAKTNLMKRFKLSELQAQAILDMQLRRLAALERWKIEEEHKQVQATIEYLEDLLANPKKILALIQSDLNELAEKFGDDRRTQISAEAKEDIHDEDLVPDEAVLISLTERGYIKRVAASAFKSQSRGGRGVMGHTTKDEDEIMMLIPARSLNTMLFFSDKGKVYSEKVYQIPDSDRATKGIPLVNVLALDPNEKVTAAMAVGDFSSHNYCMLMTARGRIKRVEMEEFAAVRPSGLIAMSLEEGDHLGWARLTSGKDEIIIVTENGQALRFSEDKVRSMGRQAAGVQGIKLKKDDAVTSMDVVEKDGALLVITTRGFGKQTPLKDYSAKGRATGGNFTIDPKALKEIGKIAAARVVQKADDLTIMTSNGVTLRLKVKEVKQSGRATKGVHLIKPQEGDSVASVARISAEDLKKVGAETIETEPEAQPKLV |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 2 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 3 | 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) | Metagenome | Rhizosphere |
| 4 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Metagenome | Rhizosphere |
| 7 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 9 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 12 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 13 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 14 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 15 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 16 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 17 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 18 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 19 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 23 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 24 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 25 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 26 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 27 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 28 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 29 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 30 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 31 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 32 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 33 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 34 | 3300032137 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC | Metagenome | Rhizosphere |
| 35 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 36 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 37 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 38 | 3300037588 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA | Metagenome | Rhizosphere |
| 39 | 3300038725 | Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 | Metagenome | Unclassified |
| 40 | 3300038726 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 | Metagenome | Unclassified |
| 41 | 3300039093 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 | Metagenome | Unclassified |
| 42 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 43 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 44 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 45 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 46 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 47 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 48 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 49 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 50 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 51 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 52 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 53 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 54 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 55 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 100 |
| Metatranscriptomes | 0 |
| Isolates | 0 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.72 |
| Nodule | 0 |
| Rhizoplane | 0 |
| Rhizosphere | 95.69 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5ztj-assembly1.cif.gz_A | crystal structure of gyrasea c-terminal domain from salmonella typhi at 2.4a resolution | 0.9351 | 511 | 817 |
| 5ztj-assembly1.cif.gz_A | crystal structure of gyrasea c-terminal domain from salmonella typhi at 2.4a resolution | 0.932 | 511 | 817 |
| 4z3o-assembly1.cif.gz_B | quinolone(moxifloxacin)-dna cleavage complex of topoisomerase iv from s. pneumoniae | 0.9282 | 23 | 496 |
| 4z53-assembly1.cif.gz_B | quinolone(trovafloxacin)-dna cleavage complex of topoisomerase iv from s. pneumoniae | 0.9262 | 19 | 496 |
| 4ddq-assembly3.cif.gz_F | structural plasticity of the bacillus subtilis gyra homodimer | 0.926 | 39 | 497 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4ddqB03 | Mainly Alpha;Orthogonal Bundle;Topoisomerase; domain 3;Topoisomerase, domain 3 | 0.9743 | 380 | 467 | 1.10.268.10 |
| 4ddqF02 | Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; | 0.9717 | 247 | 342 | 3.30.1360.40 |
| 2xcqA04 | Mainly Alpha;Orthogonal Bundle;Topoisomerase; domain 3;Topoisomerase, domain 3 | 0.9629 | 380 | 467 | 1.10.268.10 |
| 2xcoA04 | Mainly Alpha;Orthogonal Bundle;Topoisomerase; domain 3;Topoisomerase, domain 3 | 0.9595 | 380 | 467 | 1.10.268.10 |
| 1ab4A02 | Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; | 0.9551 | 247 | 342 | 3.30.1360.40 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7C4KI68-F1-model_v4 | DNA gyrase subunit A | 0.9934 | 601 | 817 |
GO:0003677
GO:0003918 GO:0005524 GO:0005737 GO:0006265 GO:0009330 |
| AF-A0A355C5X5-F1-model_v4 | DNA gyrase subunit A | 0.9893 | 267 | 493 |
GO:0003677
GO:0005524 GO:0005737 GO:0006265 GO:0009330 GO:0034335 |
| AF-J5NCK5-F1-model_v4 | deleted | 0.9855 | 219 | 377 |
|
| AF-W1V7W8-F1-model_v4 | deleted | 0.9849 | 180 | 352 |
|
| AF-A0A3C2ES54-F1-model_v4 | deleted | 0.9835 | 181 | 345 |
|