F088864

General Info

Members Datasets Scaffolds Average Seq Length
116 88 114 729

Family's Representative Sequence

Representative Sequence 3300031241|Ga0265325_10007594|Ga0265325_100075945
Length 810
Sequence VDYTSVHRPAMTVVQSRSEVAAAPASAFAVDPVCGMKVDLSKDKPTFDYRGVTYHFCSAGCRSKFAADPEKYVAKAAGAAPPLTGEGAGPSASMHTHGDDHSGATLCTCPMHPEIVRDAPGSCPICGMALEPMVASLDGAPNPELRDMTRRFAVSAPLAVILLVLDMAEHIFGVDLLPFLPPVAHQWLELVLAVPAVLWAGWPFFVRGARSFVVLRLNMFTLIALGTGAAFLYSLAAVLAPGIFSPAMRDMHGLVPLYFESAAVITALVLLGQVLELRARDETGGAVRALLKRAPAVARRVAADDSAHEVPLADIVPGDVLRVRPGDLVPLDGVVATGASSVDESLITGEPIPVEKSAGAAVTGGTVNGTGSFDMRVERTGAATTLARIVALVAEAQRTRAPIQSLADRVSAWFVPAVIIIAIAAFAAWYAFGPAPGLPNALVAALSVLIIACPCALGLATPISIMVATGRGATAGVLVRNAAALARLAAADTAVLDKTGTLTEGRPTVVAVEPYPGFAASDVLALAAAVEQGSEHPLAAAIVRAAAEGKLTLQRAEGFAAVPGKGVGAAVGGRRIALGNAAMMADIGAPLGDSAATGKASERRDSGDTVMFLAVDGRPAGFLAVADPLRATAAGALTALRELGLSPVIASGDSRATVEAVAHRLGVAAAHGEVTPEGKATLVHELQKAGHRVVMAGDGVNDAPALAAADVGVAMGGGSDVAIANAGLTLLGGDLGALVRARRLAAATMGNIRQNLVFAFVYNFAGIPLAAGLLYPLTGWLLSPMIAAAAMSLSSVSVIANALRLRSTAL

Samples

Sample ID Description Type Environment
1 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
2 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
31 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
32 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
33 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
34 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
35 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
36 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
37 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
38 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
39 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
40 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
41 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
42 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
43 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
44 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
45 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
46 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
47 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
48 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
49 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
50 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
51 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
52 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
53 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
54 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
55 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
60 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
70 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
71 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
72 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
73 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
74 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
75 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
76 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
77 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
78 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
79 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
83 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
84 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
85 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
86 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
87 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
88 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.28
Metatranscriptomes 0
Isolates 1.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.72
Nodule 0
Rhizoplane 1.72
Rhizosphere 94.83
Stem 0
Stem Tuber 0
Unclassified 1.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001546 3300003203 Bacteria 10866
2 Ga0070658_10004356 3300005327 Bacteria 11548
3 Ga0070690_100000465 3300005330 Bacteria 20315
4 Ga0070661_100002312 3300005344 Bacteria 13088
5 Ga0070659_100036743 3300005366 Bacteria 3819
6 Ga0070709_10030837 3300005434 Bacteria 3221
7 Ga0070694_100008112 3300005444 Bacteria 6416
8 Ga0070698_100005377 3300005471 Bacteria 14002
9 Ga0068853_100005823 3300005539 Bacteria 9706
10 Ga0068853_100060752 3300005539 Bacteria 3266
11 Ga0068856_100076269 3300005614 Bacteria 3322
12 Ga0070702_100003910 3300005615 Bacteria 6753
13 Ga0068852_100007817 3300005616 Bacteria 7828
14 Ga0068852_100008345 3300005616 Bacteria 7628
15 Ga0068851_10000792 3300005834 Bacteria 13628
16 Ga0081539_10000010 3300005985 Bacteria 484386
17 Ga0075428_100037921 3300006844 Bacteria 5303
18 Ga0075429_100024603 3300006880 Bacteria 5226
19 Ga0105240_10000064 3300009093 Bacteria 215932
20 Ga0105245_10002234 3300009098 Bacteria 17538
21 Ga0105245_10028857 3300009098 Bacteria 4897
22 Ga0105241_10000470 3300009174 Bacteria 30476
23 Ga0163163_10006202 3300014325 Bacteria 10429
24 Ga0163163_10055884 3300014325 Bacteria 3902
25 Ga0207695_10000046 3300025913 Bacteria 430344
26 Ga0207657_10007022 3300025919 Bacteria 11585
27 Ga0207687_10001177 3300025927 Bacteria 17869
28 Ga0207667_10001414 3300025949 Bacteria 30056
29 Ga0207639_10004786 3300026041 Bacteria 9131
30 Ga0207702_10070815 3300026078 Bacteria 3000
31 Ga0207674_10066940 3300026116 Bacteria 3617
32 Ga0265325_10007594 3300031241 Bacteria 6483
33 Ga0265313_10006363 3300031595 Bacteria 8396
34 Ga0316575_10008333 3300031665 Bacteria 3772
35 Ga0265314_10007209 3300031711 Bacteria 9675
36 Ga0307406_10005317 3300031901 Bacteria 7045
37 Ga0373934_0000144 3300035086 Bacteria 26016
38 Ga0373933_0003645 3300035724 Bacteria 8533
39 Ga0373947_0010166 3300035725 Bacteria 5403
40 Ga0373937_0000428 3300036401 Bacteria 39151
41 Ga0373925_0050020 3300037068 Bacteria 3117
42 Ga0373925_0106783 3300037068 Bacteria 2159
43 Ga0395900_0009237 3300037418 Bacteria 10110
44 Ga0395898_0060020 3300037466 Bacteria 3697
45 Ga0395905_0022071 3300037471 Bacteria 6021
46 Ga0395905_0045070 3300037471 Bacteria 4137
47 Ga0395901_0057166 3300038443 Bacteria 4058
48 Ga0436365_1261241 3300039437 Bacteria 2665
49 Ga0451577_0050845 3300042876 Bacteria 3699
50 Ga0451577_0069556 3300042876 Bacteria 3139
51 Ga0453684_0000019 3300044712 Bacteria 908702
52 Ga0453684_0010060 3300044712 Bacteria 16263
53 Ga0453684_0136289 3300044712 Bacteria 2938
54 Ga0451576_0146923 3300045051 Bacteria 2458
55 Ga0495580_0004228 3300046472 Bacteria 12076
56 Ga0495635_0002960 3300046663 Bacteria 11661
57 Ga0495604_0016172 3300047317 Bacteria 5962
58 Ga0495680_0009577 3300047322 Bacteria 8701
59 Ga0495684_0016182 3300047471 Bacteria 5742
60 Ga0496103_0052210 3300048906 Bacteria 2532
61 Ga0496109_0078631 3300048912 Bacteria 3037
62 Ga0501031_0000002 3300049568 Bacteria 217588
63 Ga0501032_0000004 3300049569 Bacteria 310855
64 Ga0501033_0000016 3300049570 Bacteria 217458
65 Ga0501033_0090245 3300049570 Bacteria 2242
66 Ga0501034_0000011 3300049571 Bacteria 310855
67 Ga0501034_0000638 3300049571 Bacteria 54454
68 Ga0501036_0000001 3300049572 Bacteria 310855
69 Ga0501037_0000006 3300049573 Bacteria 217461
70 Ga0501038_0000003 3300049574 Bacteria 310855
71 Ga0501038_0025712 3300049574 Bacteria 5244
72 Ga0501038_0045376 3300049574 Bacteria 3815
73 Ga0501039_0000004 3300049575 Bacteria 310855
74 Ga0501040_0000812 3300049576 Bacteria 19463
75 Ga0501040_0072072 3300049576 Bacteria 2386
76 Ga0501041_0056906 3300049577 Bacteria 2390
77 Ga0501042_0004505 3300049578 Bacteria 8891
78 Ga0501042_0009917 3300049578 Bacteria 6364
79 Ga0501042_0075002 3300049578 Bacteria 2420
80 Ga0501043_0000155 3300049579 Bacteria 62570
81 Ga0501046_0053679 3300049580 Bacteria 3173
82 Ga0501047_0001325 3300049581 Bacteria 24266
83 Ga0501047_0063013 3300049581 Bacteria 3577
84 Ga0501067_0001088 3300049583 Bacteria 14648
85 Ga0501067_0011634 3300049583 Bacteria 4873
86 Ga0501068_0020539 3300049584 Bacteria 3849
87 Ga0501070_0046687 3300049586 Bacteria 3601
88 Ga0501072_0049661 3300049588 Bacteria 3302
89 Ga0501073_0028717 3300049589 Bacteria 3974
90 Ga0501074_0024629 3300049590 Bacteria 4372
91 Ga0501074_0028245 3300049590 Bacteria 4065
92 Ga0501075_0004981 3300049591 Bacteria 9060
93 Ga0501076_0034714 3300049592 Bacteria 3944
94 Ga0501080_0026973 3300049742 Bacteria 5341
95 Ga0501081_0014221 3300049743 Bacteria 5247
96 Ga0501083_0002567 3300049744 Bacteria 12486
97 Ga0501083_0020135 3300049744 Bacteria 4642
98 Ga0501083_0074226 3300049744 Bacteria 2260
99 Ga0501035_0000009 3300049822 Bacteria 310827
100 Ga0501035_0000566 3300049822 Bacteria 40951
101 Ga0501035_0058581 3300049822 Bacteria 3432
102 Ga0501035_0090330 3300049822 Bacteria 2696
103 Ga0501044_0000005 3300049823 Bacteria 310855
104 Ga0501045_0026287 3300049824 Bacteria 4186
105 nmdc:mga09592_10778_c1 3300050508 Bacteria 7432
106 nmdc:mga0n895_113250_c1 3300050512 Bacteria 2730
107 Ga0500559_0003300 3300053136 Bacteria 8003
108 Ga0500616_0021021 3300053153 Bacteria 3663
109 Ga0501084_0013221 3300054114 Bacteria 6830
110 Ga0501084_0094622 3300054114 Bacteria 2508
111 Ga0501082_0003674 3300060353 Bacteria 13411
112 Ga0501082_0017035 3300060353 Bacteria 6258
113 Ga0501082_0102445 3300060353 Bacteria 2476
114 Ga0501082_0138448 3300060353 Bacteria 2112

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049824 Ga0501045_0026287 Ga0501045_0026287_642_2297 539
2 3300049578 Ga0501042_0075002 Ga0501042_0075002_11_1687 545
3 3300049577 Ga0501041_0056906 Ga0501041_0056906_14_1885 623
4 3300049576 Ga0501040_0072072 Ga0501040_0072072_453_2369 625
5 3300049586 Ga0501070_0046687 Ga0501070_0046687_1656_3572 625
6 3300009093 Ga0105240_10000064 Ga0105240_10000064108 642
7 3300037068 Ga0373925_0106783 Ga0373925_0106783_137_2143 646
8 3300060353 Ga0501082_0138448 Ga0501082_0138448_45_2093 647
9 3300053136 Ga0500559_0003300 Ga0500559_0003300_758_3076 649
10 3300031665 Ga0316575_10008333 Ga0316575_100083331 651
11 3300049580 Ga0501046_0053679 Ga0501046_0053679_946_3036 651
12 3300044712 Ga0453684_0000019 Ga0453684_0000019_109456_111504 653
13 3300009098 Ga0105245_10028857 Ga0105245_100288571 654
14 3300053153 Ga0500616_0021021 Ga0500616_0021021_1047_3227 655
15 3300045051 Ga0451576_0146923 Ga0451576_0146923_22_2133 656
16 3300049822 Ga0501035_0000566 Ga0501035_0000566_12897_15284 660
17 3300049744 Ga0501083_0074226 Ga0501083_0074226_37_2073 663
18 3300025913 Ga0207695_10000046 Ga0207695_1000004669 664
19 3300039437 Ga0436365_1261241 Ga0436365_1261241_147_2360 665
20 3300049568 Ga0501031_0000002 Ga0501031_0000002_8936_11443 666
21 3300049569 Ga0501032_0000004 Ga0501032_0000004_206180_208687 666
22 3300049570 Ga0501033_0000016 Ga0501033_0000016_8808_11315 666
23 3300049571 Ga0501034_0000011 Ga0501034_0000011_206180_208687 666
24 3300049572 Ga0501036_0000001 Ga0501036_0000001_206180_208687 666
25 3300049573 Ga0501037_0000006 Ga0501037_0000006_8775_11282 666
26 3300049574 Ga0501038_0000003 Ga0501038_0000003_206180_208687 666
27 3300049575 Ga0501039_0000004 Ga0501039_0000004_206180_208687 666
28 3300049576 Ga0501040_0000812 Ga0501040_0000812_8770_11277 666
29 3300049579 Ga0501043_0000155 Ga0501043_0000155_8928_11435 666
30 3300049581 Ga0501047_0001325 Ga0501047_0001325_9780_12287 666
31 3300049822 Ga0501035_0000009 Ga0501035_0000009_102141_104648 666
32 3300049823 Ga0501044_0000005 Ga0501044_0000005_206180_208687 666
33 3300049570 Ga0501033_0090245 Ga0501033_0090245_84_2153 667
34 3300049822 Ga0501035_0058581 Ga0501035_0058581_715_2784 667
35 3300047317 Ga0495604_0016172 Ga0495604_0016172_632_2791 669
36 3300049571 Ga0501034_0000638 Ga0501034_0000638_46446_48650 671
37 3300014325 Ga0163163_10055884 Ga0163163_100558843 673
38 3300048906 Ga0496103_0052210 Ga0496103_0052210_426_2522 674
39 3300009174 Ga0105241_10000470 Ga0105241_100004707 675
40 3300042876 Ga0451577_0050845 Ga0451577_0050845_96_2378 675
41 3300044712 Ga0453684_0010060 Ga0453684_0010060_12714_14750 676
42 3300060353 Ga0501082_0102445 Ga0501082_0102445_405_2459 679
43 3300026078 Ga0207702_10070815 Ga0207702_100708151 680
44 3300026116 Ga0207674_10066940 Ga0207674_100669403 680
45 3300044712 Ga0453684_0136289 Ga0453684_0136289_542_2812 680
46 3300049581 Ga0501047_0063013 Ga0501047_0063013_1177_3564 683
47 3300049822 Ga0501035_0090330 Ga0501035_0090330_70_2154 683
48 3300050508 nmdc:mga09592_10778_c1 nmdc:mga09592_10778_c1_12_2096 683
49 3300006844 Ga0075428_100037921 Ga0075428_1000379212 684
50 3300035725 Ga0373947_0010166 Ga0373947_0010166_1579_3858 684
51 3300046472 Ga0495580_0004228 Ga0495580_0004228_3991_6270 684
52 3300014325 Ga0163163_10006202 Ga0163163_100062022 685
53 3300005444 Ga0070694_100008112 Ga0070694_1000081124 686
54 3300037068 Ga0373925_0050020 Ga0373925_0050020_543_2882 686
55 3300005471 Ga0070698_100005377 Ga0070698_10000537710 689
56 3300006880 Ga0075429_100024603 Ga0075429_1000246032 689
57 3300050512 nmdc:mga0n895_113250_c1 nmdc:mga0n895_113250_c1_13_2310 689
58 3300049583 Ga0501067_0011634 Ga0501067_0011634_1169_3955 690
59 3300049589 Ga0501073_0028717 Ga0501073_0028717_462_3248 690
60 3300049590 Ga0501074_0024629 Ga0501074_0024629_403_3189 690
61 3300049742 Ga0501080_0026973 Ga0501080_0026973_1085_3871 690
62 3300049744 Ga0501083_0020135 Ga0501083_0020135_1739_4507 690
63 3300060353 Ga0501082_0017035 Ga0501082_0017035_348_3134 690
64 3300037471 Ga0395905_0045070 Ga0395905_0045070_1205_3706 692
65 3300049584 Ga0501068_0020539 Ga0501068_0020539_1343_3661 695
66 3300049743 Ga0501081_0014221 Ga0501081_0014221_693_3032 696
67 3300049574 Ga0501038_0025712 Ga0501038_0025712_2323_4641 697
68 3300049578 Ga0501042_0004505 Ga0501042_0004505_3493_5811 697
69 3300054114 Ga0501084_0094622 Ga0501084_0094622_61_2379 697
70 3300046663 Ga0495635_0002960 Ga0495635_0002960_2222_4534 698
71 3300047322 Ga0495680_0009577 Ga0495680_0009577_1976_4288 698
72 3300047471 Ga0495684_0016182 Ga0495684_0016182_573_2885 698
73 3300049588 Ga0501072_0049661 Ga0501072_0049661_615_2954 698
74 3300005434 Ga0070709_10030837 Ga0070709_100308372 700
75 3300049591 Ga0501075_0004981 Ga0501075_0004981_2596_5091 700
76 3300035086 Ga0373934_0000144 Ga0373934_0000144_12615_14948 701
77 3300035724 Ga0373933_0003645 Ga0373933_0003645_2645_4978 701
78 3300036401 Ga0373937_0000428 Ga0373937_0000428_9818_12151 701
79 3300048912 Ga0496109_0078631 Ga0496109_0078631_231_2558 702
80 3300005330 Ga0070690_100000465 Ga0070690_1000004655 703
81 3300005615 Ga0070702_100003910 Ga0070702_1000039105 703
82 3300005616 Ga0068852_100007817 Ga0068852_1000078174 705
83 3300037466 Ga0395898_0060020 Ga0395898_0060020_1056_3539 705
84 3300049583 Ga0501067_0001088 Ga0501067_0001088_5870_8275 706
85 3300049590 Ga0501074_0028245 Ga0501074_0028245_55_2460 706
86 3300049592 Ga0501076_0034714 Ga0501076_0034714_1108_3513 706
87 3300049744 Ga0501083_0002567 Ga0501083_0002567_4217_6622 706
88 3300054114 Ga0501084_0013221 Ga0501084_0013221_2407_4812 706
89 3300060353 Ga0501082_0003674 Ga0501082_0003674_3861_6266 706
90 3300037418 Ga0395900_0009237 Ga0395900_0009237_4775_7048 711
91 3300037471 Ga0395905_0022071 Ga0395905_0022071_3431_5704 711
92 3300038443 Ga0395901_0057166 Ga0395901_0057166_1720_3993 711
93 3300049574 Ga0501038_0045376 Ga0501038_0045376_660_3053 714
94 3300031711 Ga0265314_10007209 Ga0265314_100072093 723
95 3300042876 Ga0451577_0069556 Ga0451577_0069556_711_2975 723
96 3300005327 Ga0070658_10004356 Ga0070658_100043566 724
97 3300005366 Ga0070659_100036743 Ga0070659_1000367432 724
98 3300005539 Ga0068853_100060752 Ga0068853_1000607521 724
99 3300005616 Ga0068852_100008345 Ga0068852_1000083456 724
100 3300025919 Ga0207657_10007022 Ga0207657_100070227 724
101 3300025949 Ga0207667_10001414 Ga0207667_100014149 724
102 3300031901 Ga0307406_10005317 Ga0307406_100053174 724
103 3300005344 Ga0070661_100002312 Ga0070661_10000231211 725
104 3300005539 Ga0068853_100005823 Ga0068853_10000582310 725
105 3300005614 Ga0068856_100076269 Ga0068856_1000762692 725
106 3300005834 Ga0068851_10000792 Ga0068851_100007928 725
107 3300026041 Ga0207639_10004786 Ga0207639_1000478610 725
108 3300009098 Ga0105245_10002234 Ga0105245_1000223410 726
109 3300025927 Ga0207687_10001177 Ga0207687_100011774 726
110 3300049578 Ga0501042_0009917 Ga0501042_0009917_318_2642 729
111 iso_pu_bacteria 2728369276 2729906183 729
112 iso_pu_bacteria 2857481737 2857483781 729
113 3300031595 Ga0265313_10006363 Ga0265313_100063636 731
114 3300031241 Ga0265325_10007594 Ga0265325_100075945 732
115 3300003203 JGI25406J46586_10001546 JGI25406J46586_100015468 733
116 3300005985 Ga0081539_10000010 Ga0081539_1000001022 733

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19335

HMBD

Heavy metal binding domain

108

133

0.97

PF00122

E1-E2_ATPase

E1-E2 ATPase

292

475

0.96

PF04945

YHS

YHS domain

29

76

0.94

PF00702

Hydrolase

haloacid dehalogenase-like hydrolase

491

710

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2voy-assembly1.cif.gz_F cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9823 212 318
2voy-assembly1.cif.gz_I cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.941 409 665
2voy-assembly1.cif.gz_J cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9254 430 550
2voy-assembly1.cif.gz_I cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9197 409 665
2voy-assembly1.cif.gz_F cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9142 212 318
ID Description Score Start End Superfamily
af_Q557B5_1074_1224_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9899 549 678 3.40.50.1000
2hc8A00 Mainly Beta;Distorted Sandwich;Calcium-transporting ATPase, cytoplasmic transduction domain A;Calcium-transporting ATPase, cytoplasmic transduction domain A 0.9823 212 318 2.70.150.10
af_P9WPS7_255_365_2.70.150.10 Mainly Beta;Distorted Sandwich;Calcium-transporting ATPase, cytoplasmic transduction domain A;Calcium-transporting ATPase, cytoplasmic transduction domain A 0.978 212 318 2.70.150.10
af_Q4DIX9_393_509_2.70.150.10 Mainly Beta;Distorted Sandwich;Calcium-transporting ATPase, cytoplasmic transduction domain A;Calcium-transporting ATPase, cytoplasmic transduction domain A 0.9745 206 320 2.70.150.10
af_Q59385_307_423_2.70.150.10 Mainly Beta;Distorted Sandwich;Calcium-transporting ATPase, cytoplasmic transduction domain A;Calcium-transporting ATPase, cytoplasmic transduction domain A 0.9726 206 318 2.70.150.10
ID Description Score Start End GO Terms
AF-V5IE67-F1-model_v4 Putative atpase cu++ transporting alpha polypeptide 0.9904 549 682 GO:0005507
GO:0005524
GO:0005802
GO:0005886
GO:0006878
GO:0015677
GO:0016887
GO:0043682
GO:0060003
AF-A0A432JR33-F1-model_v4 deleted 0.9904 231 314
AF-A0A2S9G029-F1-model_v4 Heavy metal translocating P-type ATPase 0.9777 212 294 GO:0005507
GO:0016020
GO:0043682
GO:0055070
AF-V5IE67-F1-model_v4 Putative atpase cu++ transporting alpha polypeptide 0.9759 549 682 GO:0005507
GO:0005524
GO:0005802
GO:0005886
GO:0006878
GO:0015677
GO:0016887
GO:0043682
GO:0060003
AF-A0A3D1LC62-F1-model_v4 Heavy metal translocating P-type ATPase 0.9654 220 303 GO:0005507
GO:0016020
GO:0043682
GO:0055070

Feature Viewer

pLDDT pTM Quality
81.01 0.74 High
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Predicted Structure (AlphaFold2)

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