F085602

General Info

Members Datasets Scaffolds Average Seq Length
115 83 230 267

Family's Representative Sequence

Representative Sequence 3300049593|Ga0501077_0163672|Ga0501077_0163672_492_1379
Length 295
Sequence MDREREAARNTCCPHSRNGGVAQSRQEAKMTAEQLTVEFEAFQGKLKSFLLRMTASVQDAEDLVQETYLKARSKIDTFRGESSLKTWVFSIATNLARDLLKSRKRWPENVTDICKDAALGNGEFFQEALHTRQTSLQGNFEIKEHIAFCFTCIAKSLPLEGHLVLLLKEIYGFKVKEIAQILHLTEAIVKYHLHVSRSKMVDIFDYRCSLISKQGICHQCTELNGIFNPKQKAQEELVKLEMAREAENKSKEKLFDLRMKILRELDPFESGAAELQLHHLDHNRLVMEKYLEENS

Samples

Sample ID Description Type Environment
1 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300022732 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU1 Metagenome Rhizosphere
41 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
52 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
55 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
58 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
60 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
61 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
62 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
63 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
64 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
65 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
66 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
69 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
70 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
73 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
74 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
76 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
77 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
78 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
79 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
80 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
81 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
82 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
83 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.13
Metatranscriptomes 0.87
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.74
Nodule 0
Rhizoplane 0
Rhizosphere 87.83
Stem 0
Stem Tuber 0
Unclassified 21.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501077_0163672 3300049593 Bacteria 1413
2 SwRhRL2b_contig_2748678 2162886007 Unclassified 3599
3 JGI25406J46586_10004075 3300003203 Bacteria 6831
4 rootL2_10137684 3300003322 Unclassified 2603
5 rootH1_10368892 3300003323 Unclassified 2244
6 Ga0065704_10000357 3300005289 Bacteria 43726
7 Ga0065707_10000671 3300005295 Bacteria 14020
8 Ga0065707_10130917 3300005295 Bacteria 1922
9 Ga0070676_10009101 3300005328 Bacteria 5371
10 Ga0068869_100474305 3300005334 Bacteria 1041
11 Ga0070666_10198342 3300005335 Unclassified 1412
12 Ga0070689_100178024 3300005340 Bacteria 1726
13 Ga0070669_100362244 3300005353 Bacteria 1179
14 Ga0070675_100515135 3300005354 Unclassified 1079
15 Ga0070674_100081944 3300005356 Unclassified 2307
16 Ga0070694_100521789 3300005444 Unclassified 948
17 Ga0068867_100119890 3300005459 Bacteria 2031
18 Ga0068867_100287665 3300005459 Bacteria 1350
19 Ga0070706_100465930 3300005467 Bacteria 1176
20 Ga0070698_100018159 3300005471 Bacteria 7404
21 Ga0070698_100339597 3300005471 Bacteria 1433
22 Ga0070695_100053997 3300005545 Bacteria 2585
23 Ga0070665_100606421 3300005548 Bacteria 1108
24 Ga0068856_100000351 3300005614 Bacteria 50364
25 Ga0068859_100036855 3300005617 Unclassified 4910
26 Ga0068859_100419689 3300005617 Bacteria 1434
27 Ga0068866_10048633 3300005718 Unclassified 2145
28 Ga0068866_10122560 3300005718 Bacteria 1467
29 Ga0068860_100011249 3300005843 Bacteria 8819
30 Ga0068860_100055029 3300005843 Bacteria 3782
31 Ga0068860_100329746 3300005843 Unclassified 1499
32 Ga0068862_100048108 3300005844 Bacteria 3640
33 Ga0068862_100260681 3300005844 Bacteria 1582
34 Ga0068862_100496703 3300005844 Bacteria 1157
35 Ga0081539_10002147 3300005985 Bacteria 29144
36 Ga0097621_100411506 3300006237 Bacteria 1212
37 Ga0068871_100174414 3300006358 Bacteria 1845
38 Ga0075428_100239414 3300006844 Unclassified 1958
39 Ga0075433_10199717 3300006852 Unclassified 1778
40 Ga0075429_100001609 3300006880 Bacteria 18633
41 Ga0075429_100014310 3300006880 Bacteria 6881
42 Ga0075429_100080327 3300006880 Bacteria 2843
43 Ga0097620_100036856 3300006931 Unclassified 4910
44 Ga0097620_100419705 3300006931 Bacteria 1434
45 Ga0105240_10380408 3300009093 Bacteria 1594
46 Ga0114129_10005637 3300009147 Bacteria 17716
47 Ga0114129_10029517 3300009147 Bacteria 7767
48 Ga0114129_10059173 3300009147 Bacteria 5357
49 Ga0114129_10068441 3300009147 Bacteria 4950
50 Ga0105241_10666877 3300009174 Bacteria 946
51 Ga0105242_10070786 3300009176 Unclassified 2893
52 Ga0105249_10054493 3300009553 Bacteria 3657
53 Ga0163162_10104547 3300013306 Bacteria 2927
54 Ga0213876_10064250 3300021384 Bacteria 1937
55 Ga0213876_10212751 3300021384 Bacteria 1028
56 Ga0213876_10219828 3300021384 Bacteria 1010
57 Ga0224569_104148 3300022732 Unclassified 1110
58 Ga0207680_10235546 3300025903 Bacteria 1259
59 Ga0207645_10270695 3300025907 Unclassified 1126
60 Ga0207671_10002575 3300025914 Bacteria 19182
61 Ga0207704_10233958 3300025938 Bacteria 1368
62 Ga0207689_10005528 3300025942 Bacteria 11289
63 Ga0207712_10607020 3300025961 Bacteria 947
64 Ga0207658_10346274 3300025986 Bacteria 1293
65 Ga0207702_10000446 3300026078 Bacteria 46754
66 Ga0207648_10030810 3300026089 Bacteria 4747
67 Ga0207648_10149910 3300026089 Bacteria 2057
68 Ga0207674_10301380 3300026116 Unclassified 1551
69 Ga0265356_1000195 3300028017 Bacteria 11455
70 Ga0268265_10742140 3300028380 Unclassified 952
71 Ga0268264_10053419 3300028381 Bacteria 3371
72 Ga0268264_10077569 3300028381 Unclassified 2830
73 Ga0307517_10010683 3300028786 Bacteria 12813
74 Ga0307515_10022252 3300028794 Bacteria 11180
75 Ga0265338_10028197 3300028800 Bacteria 5606
76 Ga0265324_10018979 3300029957 Bacteria 2479
77 Ga0265760_10001732 3300031090 Bacteria 6418
78 Ga0265327_10005741 3300031251 Bacteria 10226
79 Ga0265327_10009746 3300031251 Bacteria 6874
80 Ga0265327_10034385 3300031251 Bacteria 2814
81 Ga0307509_10127500 3300031507 Bacteria 2508
82 Ga0265314_10006322 3300031711 Bacteria 10506
83 Ga0265342_10122965 3300031712 Bacteria 1460
84 Ga0307516_10004755 3300031730 Bacteria 16578
85 Ga0307415_100512659 3300032126 Unclassified 1051
86 Ga0373949_0021417 3300035090 Bacteria 1485
87 Ga0395905_0151185 3300037471 Bacteria 2184
88 Ga0436365_0869064 3300039437 Bacteria 1052
89 Ga0436365_1516374 3300039437 Bacteria 1061
90 Ga0436365_1523078 3300039437 Bacteria 7034
91 Ga0451577_0117352 3300042876 Bacteria 2384
92 Ga0453683_0100533 3300044673 Unclassified 1815
93 Ga0453684_0082545 3300044712 Bacteria 4003
94 Ga0453684_0114729 3300044712 Bacteria 3265
95 Ga0453684_0149614 3300044712 Bacteria 2776
96 Ga0453684_0642437 3300044712 Bacteria 1159
97 Ga0451576_0012365 3300045051 Bacteria 9591
98 Ga0495611_0000179 3300046648 Bacteria 45869
99 Ga0495672_0024130 3300047320 Bacteria 3924
100 Ga0495672_0042118 3300047320 Bacteria 2755
101 Ga0495672_0174102 3300047320 Bacteria 1095
102 Ga0501031_0132436 3300049568 Unclassified 1629
103 Ga0501075_0288266 3300049591 Bacteria 1251
104 Ga0501081_0068139 3300049743 Unclassified 2477
105 Ga0501081_0242663 3300049743 Bacteria 1314
106 nmdc:mga05p37_3011_c1 3300050507 Bacteria 19550
107 nmdc:mga09592_111547_c1 3300050508 Bacteria 2346
108 nmdc:mga09592_37630_c1 3300050508 Bacteria 4059
109 nmdc:mga09592_6529_c1 3300050508 Bacteria 9500
110 nmdc:mga0a205_62310_c1 3300050515 Bacteria 3603
111 Ga0500588_0053564 3300053146 Bacteria 1267
112 Ga0500611_000013 3300053727 Bacteria 135447
113 Ga0501084_0145560 3300054114 Bacteria 1996
114 Ga0501082_0336660 3300060353 Unclassified 1315
115 Ga0501082_0409158 3300060353 Unclassified 1184
116 Ga0501077_0163672
117 SwRhRL2b_contig_2748678
118 JGI25406J46586_10004075
119 rootL2_10137684
120 rootH1_10368892
121 Ga0065704_10000357
122 Ga0065707_10000671
123 Ga0065707_10130917
124 Ga0070676_10009101
125 Ga0068869_100474305
126 Ga0070666_10198342
127 Ga0070689_100178024
128 Ga0070669_100362244
129 Ga0070675_100515135
130 Ga0070674_100081944
131 Ga0070694_100521789
132 Ga0068867_100119890
133 Ga0068867_100287665
134 Ga0070706_100465930
135 Ga0070698_100018159
136 Ga0070698_100339597
137 Ga0070695_100053997
138 Ga0070665_100606421
139 Ga0068856_100000351
140 Ga0068859_100036855
141 Ga0068859_100419689
142 Ga0068866_10048633
143 Ga0068866_10122560
144 Ga0068860_100011249
145 Ga0068860_100055029
146 Ga0068860_100329746
147 Ga0068862_100048108
148 Ga0068862_100260681
149 Ga0068862_100496703
150 Ga0081539_10002147
151 Ga0097621_100411506
152 Ga0068871_100174414
153 Ga0075428_100239414
154 Ga0075433_10199717
155 Ga0075429_100001609
156 Ga0075429_100014310
157 Ga0075429_100080327
158 Ga0097620_100036856
159 Ga0097620_100419705
160 Ga0105240_10380408
161 Ga0114129_10005637
162 Ga0114129_10029517
163 Ga0114129_10059173
164 Ga0114129_10068441
165 Ga0105241_10666877
166 Ga0105242_10070786
167 Ga0105249_10054493
168 Ga0163162_10104547
169 Ga0213876_10064250
170 Ga0213876_10212751
171 Ga0213876_10219828
172 Ga0224569_104148
173 Ga0207680_10235546
174 Ga0207645_10270695
175 Ga0207671_10002575
176 Ga0207704_10233958
177 Ga0207689_10005528
178 Ga0207712_10607020
179 Ga0207658_10346274
180 Ga0207702_10000446
181 Ga0207648_10030810
182 Ga0207648_10149910
183 Ga0207674_10301380
184 Ga0265356_1000195
185 Ga0268265_10742140
186 Ga0268264_10053419
187 Ga0268264_10077569
188 Ga0307517_10010683
189 Ga0307515_10022252
190 Ga0265338_10028197
191 Ga0265324_10018979
192 Ga0265760_10001732
193 Ga0265327_10005741
194 Ga0265327_10009746
195 Ga0265327_10034385
196 Ga0307509_10127500
197 Ga0265314_10006322
198 Ga0265342_10122965
199 Ga0307516_10004755
200 Ga0307415_100512659
201 Ga0373949_0021417
202 Ga0395905_0151185
203 Ga0436365_0869064
204 Ga0436365_1516374
205 Ga0436365_1523078
206 Ga0451577_0117352
207 Ga0453683_0100533
208 Ga0453684_0082545
209 Ga0453684_0114729
210 Ga0453684_0149614
211 Ga0453684_0642437
212 Ga0451576_0012365
213 Ga0495611_0000179
214 Ga0495672_0024130
215 Ga0495672_0042118
216 Ga0495672_0174102
217 Ga0501031_0132436
218 Ga0501075_0288266
219 Ga0501081_0068139
220 Ga0501081_0242663
221 nmdc:mga05p37_3011_c1
222 nmdc:mga09592_111547_c1
223 nmdc:mga09592_37630_c1
224 nmdc:mga09592_6529_c1
225 nmdc:mga0a205_62310_c1
226 Ga0500588_0053564
227 Ga0500611_000013
228 Ga0501084_0145560
229 Ga0501082_0336660
230 Ga0501082_0409158

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

39

106

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

148

200

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.977 125 176
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9635 125 172
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9621 125 171
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9545 125 173
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9509 125 173
ID Description Score Start End Superfamily
4cxfA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.973 125 176 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9635 125 172 1.10.10.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9621 125 171 1.10.10.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9545 125 173 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9509 125 173 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3B8HYD2-F1-model_v4 RNA polymerase subunit sigma-24 0.9538 1 264 GO:0003677
GO:0006352
GO:0016987
AF-A0A3B8HYD2-F1-model_v4 RNA polymerase subunit sigma-24 0.9468 1 264 GO:0003677
GO:0006352
GO:0016987
AF-A0A521GJN2-F1-model_v4 RNA polymerase sigma factor 0.942 3 257 GO:0006352
GO:0016987
AF-A1ZLJ3-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.9409 1 252 GO:0006352
GO:0016987
AF-A0A3M0GPA6-F1-model_v4 RNA polymerase sigma factor 0.9379 6 260 GO:0006352
GO:0016987

Map